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NonredundantMotifs:24: Difference between revisions

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(Created page with "{{Known_motif |entrez_gene_id=6935 |motif_cluster_2013_march_motif_members= /SWISSREGULON:EOMES.p2~TBX4,5.p2~T.p2 /HOMER:TBX5_HL1-Tbx5.biotin-ChIP-Seq~EOMES_H9-Eomes-ChIP-...")
 
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{{Known_motif
{{Known_motif
|entrez_gene_id=6935
|entrez_gene_id=6935
|motif_cluster_2013_march_motif_members= /SWISSREGULON:EOMES.p2~TBX4,5.p2~T.p2 /HOMER:TBX5_HL1-Tbx5.biotin-ChIP-Seq~EOMES_H9-Eomes-ChIP-Seq /JASPAR:MA0009.1;T~MA0103.1;ZEB1 /HOCOMOCO:ZEB1_do~TBX5_si~TBX2_f1~TBX3_f1 /UNIPROBE:Eomes_primary;SCI09~Eomes_secondary;SCI09~Six4_2860.1;CELL08
|motif_cluster_2013_march_motif_members= /JASPAR:MA0009.1;T~MA0103.1;ZEB1 /HOCOMOCO:ZEB1_do~TBX5_si~TBX2_f1~TBX3_f1 /SWISSREGULON:EOMES.p2~TBX4,5.p2~T.p2 /HOMER:TBX5_HL1-Tbx5.biotin-ChIP-Seq~EOMES_H9-Eomes-ChIP-Seq /UNIPROBE:Eomes_primary;SCI09~Eomes_secondary;SCI09~Six4_2860.1;CELL08
|name=known24
|name=known24
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO

Revision as of 16:20, 1 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known24
  • db :HOCOMOCO
  • Id :ZEB1_do
  • name  :
  • score :0.7911637297312275
  • External refs:
EntrezGene:6935
UniProt:6935

  • Internal refs:
EntrezGene:6935


Motif matrix
{{{PWM}}}

Sub Motif Members