NonredundantMotifs:6: Difference between revisions
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|entrez_gene_id=5465
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NR5A1,2.p2~NR4A2.p2~NR6A1.p2~ESRRA.p2 /HOMER:ESRRB_mES-Esrrb-ChIP-Seq~ESRRA_HepG2...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=5465 | |entrez_gene_id=5465 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NR5A1,2.p2~NR4A2.p2~NR6A1.p2~ESRRA.p2 /HOMER:ESRRB_mES-Esrrb-ChIP-Seq~ESRRA_HepG2-Erra-ChIP-Seq~NR5A2_Pancreas-LRH1-ChIP-Seq(GSE34295)~NR5A2_mES-Nr5a2-ChIP-Seq~RARG_ES-RARg-ChIP-Seq(GSE30538)~NR4A1_K562-NR4A1-ChIP-Seq(GSE31363) | |motif_cluster_2013_march_motif_members= /JASPAR:MA0160.1;NR4A2~MA0071.1;RORA_1~MA0141.1;Esrrb /HOCOMOCO:VDR_f1~COT1_si~NR2C1_si~ERR1_f1~ERR3_f1~COT2_f1~STF1_f1~ESR2_si~PPARA_f1~NR5A2_f1~NR1I2_si~ERR2_f1~PPARG_si~NR4A3_f1~NR4A2_si~NR1I3_si~RARG_f1~NR6A1_do~NR4A1_f1 /SWISSREGULON:NR5A1,2.p2~NR4A2.p2~NR6A1.p2~ESRRA.p2 /HOMER:ESRRB_mES-Esrrb-ChIP-Seq~ESRRA_HepG2-Erra-ChIP-Seq~NR5A2_Pancreas-LRH1-ChIP-Seq(GSE34295)~NR5A2_mES-Nr5a2-ChIP-Seq~RARG_ES-RARg-ChIP-Seq(GSE30538)~NR4A1_K562-NR4A1-ChIP-Seq(GSE31363) /UNIPROBE:Rara_primary;SCI09~Esrra_primary;SCI09~Nr2f2_primary;SCI09 | ||
|name=known6 | |name=known6 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known6
- db :HOCOMOCO
- Id :PPARA_f1
- name :
- score :0.259608263644651
- External refs:
- Internal refs:
| Motif matrix | |
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Sub Motif Members
