NonredundantMotifs:4: Difference between revisions
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|entrez_gene_id=7584
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXA2.p3~FOX{I1,J2}.p2~FOX{D1,D2}.p2~FOXD3.p2~FOXO1,3,4.p2~FOXQ1.p2~FOX{F1,F2,J1}....") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=7584 | |entrez_gene_id=7584 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXA2.p3~FOX{I1,J2}.p2~FOX{D1,D2}.p2~FOXD3.p2~FOXO1,3,4.p2~FOXQ1.p2~FOX{F1,F2,J1}.p2 / | |motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXA2.p3~FOX{I1,J2}.p2~FOX{D1,D2}.p2~FOXD3.p2~FOXO1,3,4.p2~FOXQ1.p2~FOX{F1,F2,J1}.p2 /HOMER:FOXA1_MCF7-FOXA1-ChIP-Seq~FOXO1_RAW-Foxo1-ChIP-Seq~FOXA1_LNCAP-FOXA1-ChIP-Seq~FOXA2_Liver-Foxa2-ChIP-Seq~FOXP1_H9-FOXP1-ChIP-Seq(GSE31006) /JASPAR:MA0047.2;Foxa2~MA0040.1;Foxq1~MA0030.1;FOXF2~MA0041.1;Foxd3~MA0157.1;FOXO3~MA0031.1;FOXD1~MA0148.1;FOXA1~MA0042.1;FOXI1 /HOCOMOCO:FOXA3_f1~FOXQ1_f1~FOXO3_si~FOXA2_f1~FOXJ3_f2~FOXF2_f1~FOXD1_si~FOXA1_f1~FOXP2_si~FOXJ2_f1~FOXF1_f1~FOXO1_si~FOXD3_f1~FOXC1_f1~FOXO4_f1~FOXJ3_si /UNIPROBE:Zfp105_primary;SCI09~Foxj3_primary;SCI09~Foxa2_primary;SCI09~Foxl1_primary;SCI09~Foxj1_primary;SCI09~Foxk1_primary;SCI09 | ||
|name=known4 | |name=known4 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
Revision as of 14:07, 30 April 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known4
- db :UNIPROBE
- Id :Zfp105_primary
- name :SCI09
- score :1.676164778945942
- External refs:
- Internal refs:
| Motif matrix | |
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Sub Motif Members
