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MCL coexpression mm9:256: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_uberon=UBERON:0001264!8.39e-40!12;UBERON:0002075!1.67e-28!19;UBERON:0002323!2.49e-13!37;UBERON:0004458!2.49e-13!37;UBERON:0003886!6.56e-13!38;UBERON:0002553!1.65e-12!39;UBERON:0005409!9.05e-12!47;UBERON:0000945!1.09e-08!16;UBERON:0010039!1.09e-08!16;UBERON:0000464!1.01e-07!57
|tfbs_overrepresentation_for_novel_motifs=0.0544379,0.345537,0.390522,0.531249,0.379978,0.266072,0.385186,0.314969,0.54498,0.0748966,0.098828,0.115035,0.0780678,0.402403,1.01895,0,0.251083,0.360352,0.665827,0.402162,0.0340877,0.869427,0.401126,0.376135,0.715623,0.14366,0.251881,0.609434,0.110342,0.611032,0.274535,0.32631,0.0147366,1.65121,0.0880867,0.0885186,0.0630132,0.113142,0.741594,0.221237,0.369974,0.280961,0.115337,0.42766,0.756697,0.235475,0.196567,0.312406,0.437445,0.272614,0.238747,0.159548,0.389635,0.440493,1.15325,0.412552,0.0291064,0.351141,0.577971,0.130943,0.83644,0.495729,0.861171,0.230901,0.138355,0.719419,0.573087,0.894999,0.307386,0.756737,0.153979,1.40134,0.005797,0.483599,0.357996,1.24864,0.104559,0.553945,0.297944,0.936782,0.185572,0.263556,0.1644,0.296926,0.387484,0.198756,0.0323326,0.267129,0.19978,1.05033,0.635424,0.391521,0.336244,0.204041,0.273282,0.23577,0.496043,0.338434,0.572094,1.18703,0.0132231,0.326093,0.425975,0.672294,0.238425,0.280412,1.40627,0.307199,0.145499,0.0345946,0.428415,0.427455,0.33084,0.33246,0.64179,0.365554,0.145651,0.918673,0.252011,0.0126319,0.488218,0.619243,0.44457,0.552537,0.691048,0.300729,0.791343,0.881336,0.571744,0.9805,0.411944,0.239986,0.545694,0.432146,0.661372,0.0755135,0.459995,0.997803,0.616948,1.40994,1.01963,0.577263,0.462236,0.889034,0.233904,0.281528,0.19861,1.3709,0.464877,0.0168545,0.274714,0.000665102,0.441807,0.670754,0.139261,0.511361,0.483082,1.07894,0.19782,0.459418,0.625497,0.386791,0.301065,0.190434,0.231608,0.13506,0.329828,1.21291,0.680158
|tfbs_overrepresentation_jaspar=MA0003.1;0.032885,MA0004.1;1.36382,MA0006.1;0.213796,MA0007.1;1.29872,MA0009.1;0.34692,MA0014.1;0.0377324,MA0017.1;0.256524,MA0019.1;0.611398,MA0024.1;0.312998,MA0025.1;0.541743,MA0027.1;1.90418,MA0028.1;0.0210023,MA0029.1;0.296544,MA0030.1;0.301487,MA0031.1;0.754977,MA0038.1;0.143615,MA0040.1;0.3568,MA0041.1;1.04149,MA0042.1;1.88664,MA0043.1;0.425142,MA0046.1;0.375484,MA0048.1;0.334404,MA0050.1;0.0882677,MA0051.1;0.148819,MA0052.1;0.363203,MA0055.1;1.8839,MA0056.1;0,MA0057.1;0.174507,MA0058.1;1.37198,MA0059.1;0.362368,MA0060.1;0.622102,MA0061.1;0.289506,MA0063.1;0,MA0066.1;1.36025,MA0067.1;0.640638,MA0068.1;1.12132,MA0069.1;0.363473,MA0070.1;0.355772,MA0071.1;2.1002,MA0072.1;1.64816,MA0073.1;18.2487,MA0074.1;0.375328,MA0076.1;0.0292731,MA0077.1;0.332127,MA0078.1;0.504085,MA0081.1;0.181635,MA0083.1;0.424485,MA0084.1;0.946331,MA0087.1;0.389127,MA0088.1;0.692811,MA0089.1;0,MA0090.1;0.459964,MA0091.1;3.92333,MA0092.1;0.460613,MA0093.1;1.94561,MA0095.1;0,MA0098.1;0,MA0100.1;0.111578,MA0101.1;0.67568,MA0103.1;2.08763,MA0105.1;0.328357,MA0106.1;0.51588,MA0107.1;0.792168,MA0108.2;0.228803,MA0109.1;0,MA0111.1;0.062983,MA0113.1;0.156275,MA0114.1;1.05647,MA0115.1;0.427465,MA0116.1;0.673063,MA0117.1;1.03559,MA0119.1;3.13228,MA0122.1;0.417182,MA0124.1;0.59287,MA0125.1;0.527588,MA0130.1;0,MA0131.1;0.210184,MA0132.1;0,MA0133.1;0,MA0135.1;0.4556,MA0136.1;0.128392,MA0139.1;0.165674,MA0140.1;0.111518,MA0141.1;2.78779,MA0142.1;0.264434,MA0143.1;0.166176,MA0144.1;0.143207,MA0145.1;0.577133,MA0146.1;0.427585,MA0147.1;0.319385,MA0148.1;1.4349,MA0149.1;1.51383,MA0062.2;0.0130026,MA0035.2;0.113965,MA0039.2;1.18179,MA0138.2;2.47731,MA0002.2;0.170854,MA0137.2;0.0315069,MA0104.2;0.354134,MA0047.2;0.86636,MA0112.2;1.24574,MA0065.2;1.83504,MA0150.1;0.49998,MA0151.1;0,MA0152.1;0.143234,MA0153.1;0.469672,MA0154.1;0.485829,MA0155.1;0.501538,MA0156.1;0.0290502,MA0157.1;0.24155,MA0158.1;0,MA0159.1;0.575057,MA0160.1;0.574306,MA0161.1;0,MA0162.1;0.549259,MA0163.1;1.34941,MA0164.1;0.403627,MA0080.2;0.109464,MA0018.2;0.133983,MA0099.2;0.581639,MA0079.2;2.1284,MA0102.2;0.996522,MA0258.1;2.58935,MA0259.1;0.294749,MA0442.1;0
}}

Latest revision as of 14:58, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:81060346..81060374,-p1@Tle6
Mm9::chr10:81063608..81063626,-p2@Tle6
Mm9::chr10:93146080..93146094,-p1@Gm15915
Mm9::chr11:57786686..57786701,+p@chr11:57786686..57786701
+
Mm9::chr11:57786758..57786767,+p@chr11:57786758..57786767
+
Mm9::chr11:78364303..78364314,-p2@Tmem97
Mm9::chr11:98605517..98605539,+p5@Thra
Mm9::chr12:17739017..17739059,+p@chr12:17739017..17739059
+
Mm9::chr14:119253917..119253922,+p3@Cldn10
Mm9::chr14:21088475..21088497,-p2@Kcnk16
Mm9::chr15:88689018..88689027,+p@chr15:88689018..88689027
+
Mm9::chr16:21558663..21558681,+p@chr16:21558663..21558681
+
Mm9::chr16:21558712..21558718,+p@chr16:21558712..21558718
+
Mm9::chr17:13878671..13878693,-p@chr17:13878671..13878693
-
Mm9::chr18:34532952..34532960,-p@chr18:34532952..34532960
-
Mm9::chr19:26828078..26828093,+p@chr19:26828078..26828093
+
Mm9::chr19:52339435..52339460,+p@chr19:52339435..52339460
+
Mm9::chr19:5394385..5394402,-p1@Tsga10ip
Mm9::chr2:168357856..168357872,+p@chr2:168357856..168357872
+
Mm9::chr2:19353621..19353653,-p1@ENSMUST00000137714
Mm9::chr3:89047671..89047720,+p@chr3:89047671..89047720
+
Mm9::chr4:117727339..117727360,-p@chr4:117727339..117727360
-
Mm9::chr4:136454147..136454172,-p@chr4:136454147..136454172
-
Mm9::chr5:136460028..136460031,+p@chr5:136460028..136460031
+
Mm9::chr5:136460075..136460086,+p@chr5:136460075..136460086
+
Mm9::chr5:149771030..149771065,-p2@ENSMUST00000134251
p2@uc009aoy.1
Mm9::chr7:103945803..103945851,+p@chr7:103945803..103945851
+
Mm9::chr7:130565024..130565035,+p2@Lcmt1
Mm9::chr7:150212521..150212522,+p@chr7:150212521..150212522
+
Mm9::chr7:31343761..31343766,-p@chr7:31343761..31343766
-
Mm9::chr7:31343792..31343804,-p@chr7:31343792..31343804
-
Mm9::chr7:74823939..74823956,+p11@Ttc23
Mm9::chr9:69950882..69950917,-p3@Fam81a


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
pancreas8.39e-4012
viscus1.67e-2819
body cavity2.49e-1337
body cavity or lining2.49e-1337
body cavity precursor6.56e-1338
anatomical cavity1.65e-1239
gastrointestinal system9.05e-1247
stomach1.09e-0816
food storage organ1.09e-0816
anatomical space1.01e-0757


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.032885
MA0004.11.36382
MA0006.10.213796
MA0007.11.29872
MA0009.10.34692
MA0014.10.0377324
MA0017.10.256524
MA0019.10.611398
MA0024.10.312998
MA0025.10.541743
MA0027.11.90418
MA0028.10.0210023
MA0029.10.296544
MA0030.10.301487
MA0031.10.754977
MA0038.10.143615
MA0040.10.3568
MA0041.11.04149
MA0042.11.88664
MA0043.10.425142
MA0046.10.375484
MA0048.10.334404
MA0050.10.0882677
MA0051.10.148819
MA0052.10.363203
MA0055.11.8839
MA0056.10
MA0057.10.174507
MA0058.11.37198
MA0059.10.362368
MA0060.10.622102
MA0061.10.289506
MA0063.10
MA0066.11.36025
MA0067.10.640638
MA0068.11.12132
MA0069.10.363473
MA0070.10.355772
MA0071.12.1002
MA0072.11.64816
MA0073.118.2487
MA0074.10.375328
MA0076.10.0292731
MA0077.10.332127
MA0078.10.504085
MA0081.10.181635
MA0083.10.424485
MA0084.10.946331
MA0087.10.389127
MA0088.10.692811
MA0089.10
MA0090.10.459964
MA0091.13.92333
MA0092.10.460613
MA0093.11.94561
MA0095.10
MA0098.10
MA0100.10.111578
MA0101.10.67568
MA0103.12.08763
MA0105.10.328357
MA0106.10.51588
MA0107.10.792168
MA0108.20.228803
MA0109.10
MA0111.10.062983
MA0113.10.156275
MA0114.11.05647
MA0115.10.427465
MA0116.10.673063
MA0117.11.03559
MA0119.13.13228
MA0122.10.417182
MA0124.10.59287
MA0125.10.527588
MA0130.10
MA0131.10.210184
MA0132.10
MA0133.10
MA0135.10.4556
MA0136.10.128392
MA0139.10.165674
MA0140.10.111518
MA0141.12.78779
MA0142.10.264434
MA0143.10.166176
MA0144.10.143207
MA0145.10.577133
MA0146.10.427585
MA0147.10.319385
MA0148.11.4349
MA0149.11.51383
MA0062.20.0130026
MA0035.20.113965
MA0039.21.18179
MA0138.22.47731
MA0002.20.170854
MA0137.20.0315069
MA0104.20.354134
MA0047.20.86636
MA0112.21.24574
MA0065.21.83504
MA0150.10.49998
MA0151.10
MA0152.10.143234
MA0153.10.469672
MA0154.10.485829
MA0155.10.501538
MA0156.10.0290502
MA0157.10.24155
MA0158.10
MA0159.10.575057
MA0160.10.574306
MA0161.10
MA0162.10.549259
MA0163.11.34941
MA0164.10.403627
MA0080.20.109464
MA0018.20.133983
MA0099.20.581639
MA0079.22.1284
MA0102.20.996522
MA0258.12.58935
MA0259.10.294749
MA0442.10
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