Personal tools

MCL coexpression mm9:119: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.000651653664510869,0,0,0.00463700196893968,0.00178131840439893,0.00645702940387619,0.00752318661824681,0.00100773516882882,0,0,0,0.000336688135016017,0,0,0.00126127180398941,0,0.00232663617295858,0.000642501953070229,0.00106310545098786,0,0.0103379859804582,0,0,0.0128777557044816,0.0128887827995319,0.0072240219223164,0.00157138783755637,0.00589600451872603,0.000763186952700977,0,0,0,0.00544554167446216,0,0.00111316082497617,0,0.000815025970432785,0,0,0.00184696188939352,0,0,0,0,0.000423595714836792,0,0,0,0.00159770869096381,0.00144099401041322,0,0,0,0,0,0,0.00110526342421521,0,0.000808270636914054,0,0,0,0,0,0,0.00235472757266279,0,0,0,0,0,0.00110225340091947,0,0,0,0,0,0.000527158627368162,0,0,0,0,0.00194615619963596,0,0.000623770784749285,0,0.00175174025693135,0,0.00241981966299037,0,0,0,0,0,0,0.00162400632278943,0.0217206385519621,0.000690359238576605,0,0,0,0,0,0,0.0114278553120746,0.010293798706057,0.0116425685949212,0.034847249318311,0.00252163517333404,0,0,0.00284651475196546,0.00549689945033144,0,0.000975394034872325,0.000519290675251665,0.0278318218349657,0.00274023200001051,0,0.00173549840224551,0.00262603910235985,0,0.0196041455538647,0,0,0.00299399580633158,0,0,0,0,0.00165261356620411,0.000519242977783257,0,0,0.000828189155308442,0,0.000850874418923335,0.00293445450763905,0.000988434014130239,0,0,0,0,0,0.000288748429848957,0.00158645094576047,0.000785836301311511,0.00100932722439827,0,0,0.000711002743587017,0,0,0.00131081946296606,0,0.00079627873575664,0,0,0,0.00165156610813936,0.00261148955813885,0.00528913604383799,0.00760388082022305,0.00224368125825576,0.00480598498481174,0.00610214309345499,0.00188430094228386,0.00237409838505346,0.0116429336660899,0.00768012281423523,0.00293582330159757,0.00119717978499387,0.00396115299795492,0.00110489092402048,0,0,0.00375722326264064,0.00522431668731544,0.00999130980605169,0.00759235795897068,0.0101655772166232,0.0147136578185712,0.0158435077580558,0.0280694370689566,0.0063346612469839,0.0306178348724209,0.061680841050573,0.188958767841761,0.0626528164580321,0.00562593256930701,0.00415126641348972,0.00545400699895063,0,0,0,0,0,0.000892087913019582,0.00179618265049742,0.00234275152529644,0.000639726075058271,0.000510437607485824,0.00113895608177874,0.0035965769279371,0.0105884209802144,0.00942079670638619,0.0142045853465384,0.000947815909714081,0.0045973572130743,0.0136291520128351,0.00197747472029296,0.00476435532757057,0.00390885921323623,0.0141305220873458,0.00425467017637521,0,0.000723840111243448,0.00172705208538226,0.0335889670417836,0.0103561622162909,0.0257800001318086,0.0308218683225812,0.0204715030012817,0.0191516774245916,0.00719268140727432,0.00853803910253183,0.0199571748296921,0.0248245836266016,0.0274450619666996,0.0280510669291016,0.0308520024492869,0.0318048526648245,0,0,0.00300442883861848,0.00487220592593831,0.00130634498374005,0.000486216868584906,0,0.00278068054871337,0,0,0,0,0,0.00109346021427895,0.00149108895935859,0,0,0,0.00352873186028728,0.00393285112839996,0.000661994953092439,0.00464819879552673,0.00568561442116069,0.0110167471872239,0.0137226776274999,0.0128007244136506,0.0132508217371552,0.0376533825322307,0.0427969816144989,0.0264713883323883,0.0303506572045013,0.0177693313446318,0.00813305853864381,0.00491016160805161,0.00128532577153667,0,0.0010093760056439,0,0.000716181672353292,0,0.00133652069647693,0,0.00725263345708447,0.0250909990873191,0.000874221097048965,0.00388792783152943,0,0.00148608155596952,0.000494692653734517,0.0026286814676459,0.0179714378453524,0,0,0.0106576785119385,0.00417436629557754,0,0,0.000903772609905765,0,0,0.000567864356333895,0.0803775003364806,0.0318098253590432,0.164128344523431,0.32519212875329,0.588016611586785,0.87343009435055,1.04300500339804,1.15791284233046,0.381741371352223,0.0010693018265365,0,0,0,0,0.00279541728387736,0.00154087267411664,0.00136966082956784,0.00141170290128168,0,0,0.000949254035994781,0.0011103634401081,0.00533450008775493,0.00161952355769257,0.00349556169919625,0.00874413824922709,0.0107902082025311,0.0063646732744113,0.0101810493784439,0.00598926085637414,0.0122167470526132,0.00841985080826311,0.010191637536153,0.00985954480283411,0.00450087273145628,0.00391009810022336,0.00391678794503471,0,0,0,0.00635940664454914,0.00271386367758861,0.00147556372273625,0.00580587399672542,0,0,0,0.00198686741054888,0.000695688926804739,0,0,0,0,0.00163947654091079,0.0018303352745149,0,0.00418506396428229,0.00512922629925903,0.0201175358644353,0.0110814106032108,0.0373544519312964,0.074612106354303,0.0721207652148584,0.0741809441012085,0.072073560683882,0.0745182288173686,0.0710272438655337,0.0775839092223688,0.072036895445172,0.071169053028922,0.0721352344593468,0.0681487186593336,0.0726349875630156,0.0682797745716144,0.0730022823698363,0.0664307162228672,0.0762374032551662,0.0691765447550418,0.0767896156695274,0.0747661829609399,0.0784912638837735,0.0659916273494849,0.0718282264129005,0.0740072922389851,0.0740353264649962,0.0699807553355792,0.068441471857094,0.0838940322314962,0.072711709840685,0.0658407315433058,0.00355518300189034,0.11375391606035,0.124501568439549,0.000767847355141318,0.00262334280295158,0.0037934550054629|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788034163803455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155949496944283,0.39157338123778,0.711713505025158,0.881290652537111,1.02818291093427,0.182845846232878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=GO:0004194;pepsin A activity;0.0219100036200702;58803!GO:0004190;aspartic-type endopeptidase activity;0.0246420004341779;58803!|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0000945!2.37e-28!16;UBERON:0010039!2.37e-28!16;UBERON:0005409!3.25e-13!47|tfbs_overrepresentation_for_novel_motifs=0.00529847,0.688499,0.00337193,0.46587,4.85252,1.62342,0.214231,0.143201,2.01383,0.000155401,0.153603,0.352786,0.293699,0.0385447,0.823181,0,0.0384076,1.52499,0.5336,0.160833,0.596812,1.66837,0.00722813,0.888558,0.830387,0.0492781,0.363895,0.0159864,0.00398712,0.382052,0.0450833,0.893557,0.0545181,0.698051,0.0855659,1.37781e-05,1.16799e-05,0.0878144,0.6008,0.000655183,1.08004,0.0142972,2.80662,1.05186,0.314019,0.00123666,0.0939292,0.433385,1.24964,0.216993,0.0341551,0.0614261,0.428908,0.130113,0.43003,0.00790274,1.12874,0.0047076,0.230704,0.00772768,0.062308,0.0139962,0.525852,0.12871,0.00890919,0.367134,0.217123,0.474356,1.252,0.357862,0.000282339,2.80784,2.39471e-07,0.15672,8.83558e-07,0.00671747,1.6009,0.0195583,0.207175,0.820769,0.163353,0.0429481,0.0653611,0.126422,0.0999845,1.92865e-16,2.07015e-05,0.882511,0.022336,0.612455,0.262685,0.684086,0.546684,1.17063,5.52373e-05,0.00773391,0.281255,0.0749816,0.021518,0.131992,2.22834,0.243583,0.121563,1.78311,0.320776,0.0142173,0.0498684,0.422058,0.00197813,0.000194988,0.106813,0.122424,0.449444,0.00393679,0.737739,2.12049,3.2622e-07,0.00158208,0.15203,0.302363,0.48189,0.509909,0.281503,0.0194109,0.305363,0.057863,0.037087,0.071444,0.21617,1.19832,0.364541,0.0810076,0.197957,0.26692,0.282374,0.00128599,0.225422,0.369782,0.248915,0.949823,0.584675,1.17657,0.514762,0.542265,0.311036,0.00226598,0.730682,0.912402,3.13282,0.000258909,0.0165509,1.67364e-12,1.32013,0.187184,0.45869,0.174758,1.98422,0.265817,0.00508759,0.00604292,0.25526,0.327726,0.21112,0.0177837,2.22493,0.440048,0.0216159,0.349223,0.0680786|tfbs_overrepresentation_jaspar=MA0003.1;2.12152e-15,MA0004.1;0.0101056,MA0006.1;0.000349744,MA0007.1;0.152405,MA0009.1;0.0790942,MA0014.1;3.64276e-10,MA0017.1;0.194031,MA0019.1;0.267505,MA0024.1;0.845594,MA0025.1;0.19524,MA0027.1;1.43248,MA0028.1;0.000464474,MA0029.1;0.205413,MA0030.1;0.0581879,MA0031.1;0.178929,MA0038.1;1.04052,MA0040.1;1.0045,MA0041.1;0.149173,MA0042.1;0.0665844,MA0043.1;0.121079,MA0046.1;0.0935986,MA0048.1;0.00325561,MA0050.1;0.0545776,MA0051.1;0.0530956,MA0052.1;0.0872399,MA0055.1;0.175289,MA0056.1;0,MA0057.1;0.000744903,MA0058.1;0.0261236,MA0059.1;0.232091,MA0060.1;2.28874e-05,MA0061.1;1.42649,MA0063.1;0,MA0066.1;4.21313,MA0067.1;0.26661,MA0068.1;0.0489802,MA0069.1;0.613665,MA0070.1;0.0834817,MA0071.1;0.599734,MA0072.1;0.0801542,MA0073.1;1.7966e-09,MA0074.1;0.203692,MA0076.1;0.0164684,MA0077.1;0.536689,MA0078.1;0.59178,MA0081.1;0.175521,MA0083.1;0.120697,MA0084.1;0.519277,MA0087.1;0.3311,MA0088.1;0.18687,MA0089.1;0,MA0090.1;0.00606841,MA0091.1;0.100247,MA0092.1;0.0604401,MA0093.1;0.00289685,MA0095.1;0,MA0098.1;0,MA0100.1;0.00508062,MA0101.1;0.253381,MA0103.1;0.220139,MA0105.1;1.31912,MA0106.1;0.189124,MA0107.1;2.48509,MA0108.2;0.300139,MA0109.1;0,MA0111.1;0.0708559,MA0113.1;0.811086,MA0114.1;0.60691,MA0115.1;0.776172,MA0116.1;0.0407218,MA0117.1;0.107308,MA0119.1;0.00307165,MA0122.1;0.116491,MA0124.1;0.231301,MA0125.1;0.545304,MA0130.1;0,MA0131.1;0.025247,MA0132.1;0,MA0133.1;0,MA0135.1;0.139235,MA0136.1;0.00734286,MA0139.1;0.00247699,MA0140.1;0.186989,MA0141.1;0.00646748,MA0142.1;0.166376,MA0143.1;0.0668269,MA0144.1;0.988949,MA0145.1;0.578127,MA0146.1;0.0640414,MA0147.1;0.0767598,MA0148.1;1.00675,MA0149.1;0.00336254,MA0062.2;6.32825e-06,MA0035.2;0.553091,MA0039.2;1.2639e-11,MA0138.2;0.250434,MA0002.2;0.140577,MA0137.2;0.393102,MA0104.2;0.0228542,MA0047.2;0.476136,MA0112.2;0.242321,MA0065.2;0.955707,MA0150.1;0.152242,MA0151.1;0,MA0152.1;1.39192,MA0153.1;1.42516,MA0154.1;1.79252,MA0155.1;0.0122598,MA0156.1;0.0821904,MA0157.1;0.59451,MA0158.1;0,MA0159.1;0.0101361,MA0160.1;0.206559,MA0161.1;0,MA0162.1;3.78511e-06,MA0163.1;0.00724107,MA0164.1;0.111254,MA0080.2;0.0325706,MA0018.2;0.0424576,MA0099.2;0.242021,MA0079.2;0,MA0102.2;0.563914,MA0258.1;3.96491,MA0259.1;0.00608838,MA0442.1;0}}
|coexpression_dpi_cluster_scores_mean=0.000651653664510869,0,0,0.00463700196893968,0.00178131840439893,0.00645702940387619,0.00752318661824681,0.00100773516882882,0,0,0,0.000336688135016017,0,0,0.00126127180398941,0,0.00232663617295858,0.000642501953070229,0.00106310545098786,0,0.0103379859804582,0,0,0.0128777557044816,0.0128887827995319,0.0072240219223164,0.00157138783755637,0.00589600451872603,0.000763186952700977,0,0,0,0.00544554167446216,0,0.00111316082497617,0,0.000815025970432785,0,0,0.00184696188939352,0,0,0,0,0.000423595714836792,0,0,0,0.00159770869096381,0.00144099401041322,0,0,0,0,0,0,0.00110526342421521,0,0.000808270636914054,0,0,0,0,0,0,0.00235472757266279,0,0,0,0,0,0.00110225340091947,0,0,0,0,0,0.000527158627368162,0,0,0,0,0.00194615619963596,0,0.000623770784749285,0,0.00175174025693135,0,0.00241981966299037,0,0,0,0,0,0,0.00162400632278943,0.0217206385519621,0.000690359238576605,0,0,0,0,0,0,0.0114278553120746,0.010293798706057,0.0116425685949212,0.034847249318311,0.00252163517333404,0,0,0.00284651475196546,0.00549689945033144,0,0.000975394034872325,0.000519290675251665,0.0278318218349657,0.00274023200001051,0,0.00173549840224551,0.00262603910235985,0,0.0196041455538647,0,0,0.00299399580633158,0,0,0,0,0.00165261356620411,0.000519242977783257,0,0,0.000828189155308442,0,0.000850874418923335,0.00293445450763905,0.000988434014130239,0,0,0,0,0,0.000288748429848957,0.00158645094576047,0.000785836301311511,0.00100932722439827,0,0,0.000711002743587017,0,0,0.00131081946296606,0,0.00079627873575664,0,0,0,0.00165156610813936,0.00261148955813885,0.00528913604383799,0.00760388082022305,0.00224368125825576,0.00480598498481174,0.00610214309345499,0.00188430094228386,0.00237409838505346,0.0116429336660899,0.00768012281423523,0.00293582330159757,0.00119717978499387,0.00396115299795492,0.00110489092402048,0,0,0.00375722326264064,0.00522431668731544,0.00999130980605169,0.00759235795897068,0.0101655772166232,0.0147136578185712,0.0158435077580558,0.0280694370689566,0.0063346612469839,0.0306178348724209,0.061680841050573,0.188958767841761,0.0626528164580321,0.00562593256930701,0.00415126641348972,0.00545400699895063,0,0,0,0,0,0.000892087913019582,0.00179618265049742,0.00234275152529644,0.000639726075058271,0.000510437607485824,0.00113895608177874,0.0035965769279371,0.0105884209802144,0.00942079670638619,0.0142045853465384,0.000947815909714081,0.0045973572130743,0.0136291520128351,0.00197747472029296,0.00476435532757057,0.00390885921323623,0.0141305220873458,0.00425467017637521,0,0.000723840111243448,0.00172705208538226,0.0335889670417836,0.0103561622162909,0.0257800001318086,0.0308218683225812,0.0204715030012817,0.0191516774245916,0.00719268140727432,0.00853803910253183,0.0199571748296921,0.0248245836266016,0.0274450619666996,0.0280510669291016,0.0308520024492869,0.0318048526648245,0,0,0.00300442883861848,0.00487220592593831,0.00130634498374005,0.000486216868584906,0,0.00278068054871337,0,0,0,0,0,0.00109346021427895,0.00149108895935859,0,0,0,0.00352873186028728,0.00393285112839996,0.000661994953092439,0.00464819879552673,0.00568561442116069,0.0110167471872239,0.0137226776274999,0.0128007244136506,0.0132508217371552,0.0376533825322307,0.0427969816144989,0.0264713883323883,0.0303506572045013,0.0177693313446318,0.00813305853864381,0.00491016160805161,0.00128532577153667,0,0.0010093760056439,0,0.000716181672353292,0,0.00133652069647693,0,0.00725263345708447,0.0250909990873191,0.000874221097048965,0.00388792783152943,0,0.00148608155596952,0.000494692653734517,0.0026286814676459,0.0179714378453524,0,0,0.0106576785119385,0.00417436629557754,0,0,0.000903772609905765,0,0,0.000567864356333895,0.0803775003364806,0.0318098253590432,0.164128344523431,0.32519212875329,0.588016611586785,0.87343009435055,1.04300500339804,1.15791284233046,0.381741371352223,0.0010693018265365,0,0,0,0,0.00279541728387736,0.00154087267411664,0.00136966082956784,0.00141170290128168,0,0,0.000949254035994781,0.0011103634401081,0.00533450008775493,0.00161952355769257,0.00349556169919625,0.00874413824922709,0.0107902082025311,0.0063646732744113,0.0101810493784439,0.00598926085637414,0.0122167470526132,0.00841985080826311,0.010191637536153,0.00985954480283411,0.00450087273145628,0.00391009810022336,0.00391678794503471,0,0,0,0.00635940664454914,0.00271386367758861,0.00147556372273625,0.00580587399672542,0,0,0,0.00198686741054888,0.000695688926804739,0,0,0,0,0.00163947654091079,0.0018303352745149,0,0.00418506396428229,0.00512922629925903,0.0201175358644353,0.0110814106032108,0.0373544519312964,0.074612106354303,0.0721207652148584,0.0741809441012085,0.072073560683882,0.0745182288173686,0.0710272438655337,0.0775839092223688,0.072036895445172,0.071169053028922,0.0721352344593468,0.0681487186593336,0.0726349875630156,0.0682797745716144,0.0730022823698363,0.0664307162228672,0.0762374032551662,0.0691765447550418,0.0767896156695274,0.0747661829609399,0.0784912638837735,0.0659916273494849,0.0718282264129005,0.0740072922389851,0.0740353264649962,0.0699807553355792,0.068441471857094,0.0838940322314962,0.072711709840685,0.0658407315433058,0.00355518300189034,0.11375391606035,0.124501568439549,0.000767847355141318,0.00262334280295158,0.0037934550054629
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788034163803455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155949496944283,0.39157338123778,0.711713505025158,0.881290652537111,1.02818291093427,0.182845846232878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0004194;pepsin A activity;0.0219100036200702;58803!GO:0004190;aspartic-type endopeptidase activity;0.0246420004341779;58803!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000945!2.37e-28!16;UBERON:0010039!2.37e-28!16;UBERON:0005409!3.25e-13!47
|tfbs_overrepresentation_for_novel_motifs=0.00529847,0.688499,0.00337193,0.46587,4.85252,1.62342,0.214231,0.143201,2.01383,0.000155401,0.153603,0.352786,0.293699,0.0385447,0.823181,0,0.0384076,1.52499,0.5336,0.160833,0.596812,1.66837,0.00722813,0.888558,0.830387,0.0492781,0.363895,0.0159864,0.00398712,0.382052,0.0450833,0.893557,0.0545181,0.698051,0.0855659,1.37781e-05,1.16799e-05,0.0878144,0.6008,0.000655183,1.08004,0.0142972,2.80662,1.05186,0.314019,0.00123666,0.0939292,0.433385,1.24964,0.216993,0.0341551,0.0614261,0.428908,0.130113,0.43003,0.00790274,1.12874,0.0047076,0.230704,0.00772768,0.062308,0.0139962,0.525852,0.12871,0.00890919,0.367134,0.217123,0.474356,1.252,0.357862,0.000282339,2.80784,2.39471e-07,0.15672,8.83558e-07,0.00671747,1.6009,0.0195583,0.207175,0.820769,0.163353,0.0429481,0.0653611,0.126422,0.0999845,1.92865e-16,2.07015e-05,0.882511,0.022336,0.612455,0.262685,0.684086,0.546684,1.17063,5.52373e-05,0.00773391,0.281255,0.0749816,0.021518,0.131992,2.22834,0.243583,0.121563,1.78311,0.320776,0.0142173,0.0498684,0.422058,0.00197813,0.000194988,0.106813,0.122424,0.449444,0.00393679,0.737739,2.12049,3.2622e-07,0.00158208,0.15203,0.302363,0.48189,0.509909,0.281503,0.0194109,0.305363,0.057863,0.037087,0.071444,0.21617,1.19832,0.364541,0.0810076,0.197957,0.26692,0.282374,0.00128599,0.225422,0.369782,0.248915,0.949823,0.584675,1.17657,0.514762,0.542265,0.311036,0.00226598,0.730682,0.912402,3.13282,0.000258909,0.0165509,1.67364e-12,1.32013,0.187184,0.45869,0.174758,1.98422,0.265817,0.00508759,0.00604292,0.25526,0.327726,0.21112,0.0177837,2.22493,0.440048,0.0216159,0.349223,0.0680786
|tfbs_overrepresentation_jaspar=MA0003.1;2.12152e-15,MA0004.1;0.0101056,MA0006.1;0.000349744,MA0007.1;0.152405,MA0009.1;0.0790942,MA0014.1;3.64276e-10,MA0017.1;0.194031,MA0019.1;0.267505,MA0024.1;0.845594,MA0025.1;0.19524,MA0027.1;1.43248,MA0028.1;0.000464474,MA0029.1;0.205413,MA0030.1;0.0581879,MA0031.1;0.178929,MA0038.1;1.04052,MA0040.1;1.0045,MA0041.1;0.149173,MA0042.1;0.0665844,MA0043.1;0.121079,MA0046.1;0.0935986,MA0048.1;0.00325561,MA0050.1;0.0545776,MA0051.1;0.0530956,MA0052.1;0.0872399,MA0055.1;0.175289,MA0056.1;0,MA0057.1;0.000744903,MA0058.1;0.0261236,MA0059.1;0.232091,MA0060.1;2.28874e-05,MA0061.1;1.42649,MA0063.1;0,MA0066.1;4.21313,MA0067.1;0.26661,MA0068.1;0.0489802,MA0069.1;0.613665,MA0070.1;0.0834817,MA0071.1;0.599734,MA0072.1;0.0801542,MA0073.1;1.7966e-09,MA0074.1;0.203692,MA0076.1;0.0164684,MA0077.1;0.536689,MA0078.1;0.59178,MA0081.1;0.175521,MA0083.1;0.120697,MA0084.1;0.519277,MA0087.1;0.3311,MA0088.1;0.18687,MA0089.1;0,MA0090.1;0.00606841,MA0091.1;0.100247,MA0092.1;0.0604401,MA0093.1;0.00289685,MA0095.1;0,MA0098.1;0,MA0100.1;0.00508062,MA0101.1;0.253381,MA0103.1;0.220139,MA0105.1;1.31912,MA0106.1;0.189124,MA0107.1;2.48509,MA0108.2;0.300139,MA0109.1;0,MA0111.1;0.0708559,MA0113.1;0.811086,MA0114.1;0.60691,MA0115.1;0.776172,MA0116.1;0.0407218,MA0117.1;0.107308,MA0119.1;0.00307165,MA0122.1;0.116491,MA0124.1;0.231301,MA0125.1;0.545304,MA0130.1;0,MA0131.1;0.025247,MA0132.1;0,MA0133.1;0,MA0135.1;0.139235,MA0136.1;0.00734286,MA0139.1;0.00247699,MA0140.1;0.186989,MA0141.1;0.00646748,MA0142.1;0.166376,MA0143.1;0.0668269,MA0144.1;0.988949,MA0145.1;0.578127,MA0146.1;0.0640414,MA0147.1;0.0767598,MA0148.1;1.00675,MA0149.1;0.00336254,MA0062.2;6.32825e-06,MA0035.2;0.553091,MA0039.2;1.2639e-11,MA0138.2;0.250434,MA0002.2;0.140577,MA0137.2;0.393102,MA0104.2;0.0228542,MA0047.2;0.476136,MA0112.2;0.242321,MA0065.2;0.955707,MA0150.1;0.152242,MA0151.1;0,MA0152.1;1.39192,MA0153.1;1.42516,MA0154.1;1.79252,MA0155.1;0.0122598,MA0156.1;0.0821904,MA0157.1;0.59451,MA0158.1;0,MA0159.1;0.0101361,MA0160.1;0.206559,MA0161.1;0,MA0162.1;3.78511e-06,MA0163.1;0.00724107,MA0164.1;0.111254,MA0080.2;0.0325706,MA0018.2;0.0424576,MA0099.2;0.242021,MA0079.2;0,MA0102.2;0.563914,MA0258.1;3.96491,MA0259.1;0.00608838,MA0442.1;0
}}

Latest revision as of 14:43, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:19676923..19676929,+p@chr10:19676923..19676929
+
Mm9::chr10:85334148..85334152,+p3@Pwp1
Mm9::chr11:86681147..86681162,-p@chr11:86681147..86681162
-
Mm9::chr14:70831816..70831820,+p@chr14:70831816..70831820
+
Mm9::chr16:93628270..93628288,+p1@ENSMUST00000120115
Mm9::chr19:10743841..10743870,+p@chr19:10743841..10743870
+
Mm9::chr19:10743940..10743949,-p@chr19:10743940..10743949
-
Mm9::chr19:10744076..10744102,-p@chr19:10744076..10744102
-
Mm9::chr19:10746348..10746361,-p@chr19:10746348..10746361
-
Mm9::chr19:10748157..10748171,-p@chr19:10748157..10748171
-
Mm9::chr19:10748223..10748235,-p@chr19:10748223..10748235
-
Mm9::chr19:10749391..10749420,-p@chr19:10749391..10749420
-
Mm9::chr19:10749530..10749541,+p@chr19:10749530..10749541
+
Mm9::chr19:10749563..10749570,-p@chr19:10749563..10749570
-
Mm9::chr19:10749574..10749582,+p@chr19:10749574..10749582
+
Mm9::chr19:10749591..10749598,-p@chr19:10749591..10749598
-
Mm9::chr19:10749609..10749648,-p@chr19:10749609..10749648
-
Mm9::chr19:10750920..10750928,-p@chr19:10750920..10750928
-
Mm9::chr19:10751153..10751160,-p@chr19:10751153..10751160
-
Mm9::chr19:10751170..10751217,-p@chr19:10751170..10751217
-
Mm9::chr19:10752491..10752510,-p1@Pga5
Mm9::chr2:130967454..130967457,-p@chr2:130967454..130967457
-
Mm9::chr2:154016485..154016495,+p3@Bpifb1
Mm9::chr2:154016499..154016504,+p7@Bpifb1
Mm9::chr2:154016542..154016568,+p1@Bpifb1
Mm9::chr2:154016569..154016593,+p4@Bpifb1
Mm9::chr2:154019091..154019094,+p@chr2:154019091..154019094
+
Mm9::chr2:84365628..84365632,+p@chr2:84365628..84365632
+
Mm9::chr3:107014210..107014220,+p@chr3:107014210..107014220
+
Mm9::chr3:107014256..107014292,+p@chr3:107014256..107014292
+
Mm9::chr3:107014302..107014325,+p@chr3:107014302..107014325
+
Mm9::chr3:107014319..107014322,-p@chr3:107014319..107014322
-
Mm9::chr3:107014339..107014352,+p@chr3:107014339..107014352
+
Mm9::chr3:107014355..107014358,+p@chr3:107014355..107014358
+
Mm9::chr3:107014366..107014374,+p@chr3:107014366..107014374
+
Mm9::chr3:107014377..107014388,+p@chr3:107014377..107014388
+
Mm9::chr3:107015681..107015709,+p@chr3:107015681..107015709
+
Mm9::chr3:107015714..107015729,+p@chr3:107015714..107015729
+
Mm9::chr3:107015720..107015731,-p@chr3:107015720..107015731
-
Mm9::chr3:107015736..107015745,-p@chr3:107015736..107015745
-
Mm9::chr3:107015744..107015752,+p@chr3:107015744..107015752
+
Mm9::chr3:107015762..107015773,-p@chr3:107015762..107015773
-
Mm9::chr3:107015775..107015779,-p@chr3:107015775..107015779
-
Mm9::chr3:107015780..107015795,-p@chr3:107015780..107015795
-
Mm9::chr3:107016291..107016317,+p@chr3:107016291..107016317
+
Mm9::chr3:107016330..107016339,-p@chr3:107016330..107016339
-
Mm9::chr3:107016353..107016368,-p@chr3:107016353..107016368
-
Mm9::chr3:107016370..107016377,-p@chr3:107016370..107016377
-
Mm9::chr3:107016384..107016389,-p@chr3:107016384..107016389
-
Mm9::chr3:107016391..107016395,-p@chr3:107016391..107016395
-
Mm9::chr3:107016397..107016429,-p@chr3:107016397..107016429
-
Mm9::chr3:107016442..107016447,-p@chr3:107016442..107016447
-
Mm9::chr3:107017164..107017195,-p@chr3:107017164..107017195
-
Mm9::chr3:107017196..107017234,-p@chr3:107017196..107017234
-
Mm9::chr3:107017678..107017684,-p@chr3:107017678..107017684
-
Mm9::chr3:107018863..107018884,+p@chr3:107018863..107018884
+
Mm9::chr3:107018871..107018876,-p@chr3:107018871..107018876
-
Mm9::chr3:107018879..107018892,-p@chr3:107018879..107018892
-
Mm9::chr3:107018895..107018907,-p@chr3:107018895..107018907
-
Mm9::chr3:107018898..107018910,+p@chr3:107018898..107018910
+
Mm9::chr3:107018911..107018965,-p@chr3:107018911..107018965
-
Mm9::chr3:107018924..107018933,+p@chr3:107018924..107018933
+
Mm9::chr3:107018967..107018992,-p@chr3:107018967..107018992
-
Mm9::chr3:107018973..107018988,+p@chr3:107018973..107018988
+
Mm9::chr3:107019000..107019013,-p@chr3:107019000..107019013
-
Mm9::chr3:107019020..107019049,-p@chr3:107019020..107019049
-
Mm9::chr3:107021039..107021045,+p@chr3:107021039..107021045
+
Mm9::chr3:107021056..107021064,-p@chr3:107021056..107021064
-
Mm9::chr3:107021063..107021068,+p@chr3:107021063..107021068
+
Mm9::chr3:107021082..107021090,-p@chr3:107021082..107021090
-
Mm9::chr3:107021082..107021131,+p@chr3:107021082..107021131
+
Mm9::chr3:107021111..107021113,-p@chr3:107021111..107021113
-
Mm9::chr3:107021118..107021126,-p@chr3:107021118..107021126
-
Mm9::chr3:107021130..107021160,-p@chr3:107021130..107021160
-
Mm9::chr3:107021519..107021552,+p@chr3:107021519..107021552
+
Mm9::chr3:107021598..107021607,+p@chr3:107021598..107021607
+
Mm9::chr3:107021610..107021615,+p@chr3:107021610..107021615
+
Mm9::chr3:107022132..107022153,-p@chr3:107022132..107022153
-
Mm9::chr3:107022543..107022549,+p@chr3:107022543..107022549
+
Mm9::chr3:107022569..107022604,-p@chr3:107022569..107022604
-
Mm9::chr3:107022619..107022659,-p@chr3:107022619..107022659
-
Mm9::chr3:107022625..107022648,+p@chr3:107022625..107022648
+
Mm9::chr3:107022666..107022678,-p@chr3:107022666..107022678
-
Mm9::chr3:107022687..107022693,-p@chr3:107022687..107022693
-
Mm9::chr3:107022698..107022703,-p@chr3:107022698..107022703
-
Mm9::chr3:107023327..107023332,-p@chr3:107023327..107023332
-
Mm9::chr3:107024640..107024656,-p1@Cym
Mm9::chr3:107033374..107033385,+p2@uc008qwu.1
Mm9::chr3:107033526..107033535,+p1@uc008qwu.1
Mm9::chr3:107044707..107044717,+p@chr3:107044707..107044717
+
Mm9::chr3:107044778..107044798,+p@chr3:107044778..107044798
+
Mm9::chr3:107044833..107044836,+p@chr3:107044833..107044836
+
Mm9::chr3:77564081..77564086,+p@chr3:77564081..77564086
+
Mm9::chr5:41578955..41578956,+p@chr5:41578955..41578956
+
Mm9::chr5:86925156..86925160,+p@chr5:86925156..86925160
+
Mm9::chr6:5461148..5461176,+p@chr6:5461148..5461176
+
Mm9::chr7:149008934..149008974,-p@chr7:149008934..149008974
-
Mm9::chr8:19517032..19517041,+p@chr8:19517032..19517041
+
Mm9::chr9:50041285..50041289,-p@chr9:50041285..50041289
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004194pepsin A activity0.0219100036200702
GO:0004190aspartic-type endopeptidase activity0.0246420004341779



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
stomach2.37e-2816
food storage organ2.37e-2816
gastrointestinal system3.25e-1347


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.12152e-15
MA0004.10.0101056
MA0006.10.000349744
MA0007.10.152405
MA0009.10.0790942
MA0014.13.64276e-10
MA0017.10.194031
MA0019.10.267505
MA0024.10.845594
MA0025.10.19524
MA0027.11.43248
MA0028.10.000464474
MA0029.10.205413
MA0030.10.0581879
MA0031.10.178929
MA0038.11.04052
MA0040.11.0045
MA0041.10.149173
MA0042.10.0665844
MA0043.10.121079
MA0046.10.0935986
MA0048.10.00325561
MA0050.10.0545776
MA0051.10.0530956
MA0052.10.0872399
MA0055.10.175289
MA0056.10
MA0057.10.000744903
MA0058.10.0261236
MA0059.10.232091
MA0060.12.28874e-05
MA0061.11.42649
MA0063.10
MA0066.14.21313
MA0067.10.26661
MA0068.10.0489802
MA0069.10.613665
MA0070.10.0834817
MA0071.10.599734
MA0072.10.0801542
MA0073.11.7966e-09
MA0074.10.203692
MA0076.10.0164684
MA0077.10.536689
MA0078.10.59178
MA0081.10.175521
MA0083.10.120697
MA0084.10.519277
MA0087.10.3311
MA0088.10.18687
MA0089.10
MA0090.10.00606841
MA0091.10.100247
MA0092.10.0604401
MA0093.10.00289685
MA0095.10
MA0098.10
MA0100.10.00508062
MA0101.10.253381
MA0103.10.220139
MA0105.11.31912
MA0106.10.189124
MA0107.12.48509
MA0108.20.300139
MA0109.10
MA0111.10.0708559
MA0113.10.811086
MA0114.10.60691
MA0115.10.776172
MA0116.10.0407218
MA0117.10.107308
MA0119.10.00307165
MA0122.10.116491
MA0124.10.231301
MA0125.10.545304
MA0130.10
MA0131.10.025247
MA0132.10
MA0133.10
MA0135.10.139235
MA0136.10.00734286
MA0139.10.00247699
MA0140.10.186989
MA0141.10.00646748
MA0142.10.166376
MA0143.10.0668269
MA0144.10.988949
MA0145.10.578127
MA0146.10.0640414
MA0147.10.0767598
MA0148.11.00675
MA0149.10.00336254
MA0062.26.32825e-06
MA0035.20.553091
MA0039.21.2639e-11
MA0138.20.250434
MA0002.20.140577
MA0137.20.393102
MA0104.20.0228542
MA0047.20.476136
MA0112.20.242321
MA0065.20.955707
MA0150.10.152242
MA0151.10
MA0152.11.39192
MA0153.11.42516
MA0154.11.79252
MA0155.10.0122598
MA0156.10.0821904
MA0157.10.59451
MA0158.10
MA0159.10.0101361
MA0160.10.206559
MA0161.10
MA0162.13.78511e-06
MA0163.10.00724107
MA0164.10.111254
MA0080.20.0325706
MA0018.20.0424576
MA0099.20.242021
MA0079.20
MA0102.20.563914
MA0258.13.96491
MA0259.10.00608838
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:119&oldid=3072118"