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Coexpression cluster:C78: Difference between revisions

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|tfbs_overrepresentation_for_novel_motifs=0.166729,0.00240142,0.00672827,0.837274,0.734051,0.826074,0.299352,1.90939,0.0825424,0.00460074,0.0465678,0.788985,0.00989782,0.176671,2.89237,0.346438,0.334507,0.695264,0.0754525,0.511474,1.76213,0.181611,0.35308,0.371131,0.0399515,0.00543258,0.282567,0.601216,0.00405973,0.011408,0.207604,0.630943,0.488099,0.157499,0.000935631,7.21667e-05,0.208955,0.0434368,1.0091,4.39297e-06,0.163034,0.040995,0.911363,0.987838,0.026504,0.0288132,0.202668,0.0671619,1.0158,0.332701,0.176634,0.0841972,0.960818,0.00716502,0.268218,1.10343,0.804249,0.123582,0.0630908,0.121993,0.331147,0.130171,1.52338,0.0785528,0.0492008,0.509056,0.175206,0.60109,0.395528,0.121757,0.0033256,0.431165,3.21527e-07,0.495821,4.67163e-05,0.599413,0.136707,0.0666947,0.586112,0.362983,0.796186,0.429968,0.50516,0.334493,0.0796889,1.94327e-08,0.00810117,0.000191196,0.0298724,0.272478,0.260936,0.57768,0.285487,0.656242,0.0141667,0.930772,0.0369469,0.581456,0.360288,0.151465,0.0659056,0.275327,0.199167,0.104022,0.314793,0.0745546,0.0105328,0.169923,0.0112559,0.015168,0.124832,0.195573,1.47394,0.14611,1.23489,0.0342665,1.2689e-05,0.0899695,0.936834,0.398905,0.478697,0.219319,0.185041,0.178854,0.672248,0.245153,0.399881,0.159867,0.569706,0.110929,0.346349,1.6364,0.0358444,0.389565,0.577171,0.212243,0.364673,0.347057,0.231929,0.631904,0.308702,0.437586,1.37386,0.0934406,0.0185337,0.17511,0.817521,0.49617,0.988368,0.00210456,0.145498,1.4518e-13,0.580447,0.303631,0.129434,0.136454,0.825035,0.732688,0.0666428,0.0604296,0.196682,0.0585443,1.10396,0.278615,0.738253,0.361027,0.599508,0.738667,2.34098e-11
|tfbs_overrepresentation_for_novel_motifs=0.166729,0.00240142,0.00672827,0.837274,0.734051,0.826074,0.299352,1.90939,0.0825424,0.00460074,0.0465678,0.788985,0.00989782,0.176671,2.89237,0.346438,0.334507,0.695264,0.0754525,0.511474,1.76213,0.181611,0.35308,0.371131,0.0399515,0.00543258,0.282567,0.601216,0.00405973,0.011408,0.207604,0.630943,0.488099,0.157499,0.000935631,7.21667e-05,0.208955,0.0434368,1.0091,4.39297e-06,0.163034,0.040995,0.911363,0.987838,0.026504,0.0288132,0.202668,0.0671619,1.0158,0.332701,0.176634,0.0841972,0.960818,0.00716502,0.268218,1.10343,0.804249,0.123582,0.0630908,0.121993,0.331147,0.130171,1.52338,0.0785528,0.0492008,0.509056,0.175206,0.60109,0.395528,0.121757,0.0033256,0.431165,3.21527e-07,0.495821,4.67163e-05,0.599413,0.136707,0.0666947,0.586112,0.362983,0.796186,0.429968,0.50516,0.334493,0.0796889,1.94327e-08,0.00810117,0.000191196,0.0298724,0.272478,0.260936,0.57768,0.285487,0.656242,0.0141667,0.930772,0.0369469,0.581456,0.360288,0.151465,0.0659056,0.275327,0.199167,0.104022,0.314793,0.0745546,0.0105328,0.169923,0.0112559,0.015168,0.124832,0.195573,1.47394,0.14611,1.23489,0.0342665,1.2689e-05,0.0899695,0.936834,0.398905,0.478697,0.219319,0.185041,0.178854,0.672248,0.245153,0.399881,0.159867,0.569706,0.110929,0.346349,1.6364,0.0358444,0.389565,0.577171,0.212243,0.364673,0.347057,0.231929,0.631904,0.308702,0.437586,1.37386,0.0934406,0.0185337,0.17511,0.817521,0.49617,0.988368,0.00210456,0.145498,1.4518e-13,0.580447,0.303631,0.129434,0.136454,0.825035,0.732688,0.0666428,0.0604296,0.196682,0.0585443,1.10396,0.278615,0.738253,0.361027,0.599508,0.738667,2.34098e-11
|tfbs_overrepresentation_jaspar=MA0003.1;0,MA0004.1;3.81273,MA0006.1;0.0230265,MA0007.1;0.320295,MA0009.1;1.3931,MA0014.1;1.7295e-09,MA0017.1;0.191226,MA0019.1;0.319752,MA0024.1;0.060328,MA0025.1;2.13582,MA0027.1;1.07859,MA0028.1;4.31896e-05,MA0029.1;0.0229732,MA0030.1;0.274221,MA0031.1;0.665163,MA0038.1;0.584986,MA0040.1;0.16709,MA0041.1;0.114757,MA0042.1;0.247328,MA0043.1;1.03981,MA0046.1;0.260554,MA0048.1;0.104833,MA0050.1;0.344382,MA0051.1;0.935009,MA0052.1;0.171731,MA0055.1;0.0242871,MA0056.1;0,MA0057.1;0.000309174,MA0058.1;1.63235,MA0059.1;0.366652,MA0060.1;0.241118,MA0061.1;6.43523,MA0063.1;0,MA0066.1;0.207283,MA0067.1;0.0813256,MA0068.1;0.00663377,MA0069.1;0.442509,MA0070.1;0.64949,MA0071.1;0.0201155,MA0072.1;0.635659,MA0073.1;0,MA0074.1;0.0350294,MA0076.1;0.00164769,MA0077.1;0.220712,MA0078.1;0.209675,MA0081.1;0.0396469,MA0083.1;0.142217,MA0084.1;0.168331,MA0087.1;0.107768,MA0088.1;0.194826,MA0089.1;0,MA0090.1;0.542327,MA0091.1;0.681071,MA0092.1;0.124848,MA0093.1;4.09822,MA0095.1;0,MA0098.1;0,MA0100.1;0.0884489,MA0101.1;3.30275,MA0103.1;6.38909,MA0105.1;2.42547,MA0106.1;4.91813,MA0107.1;3.98306,MA0108.2;0.893488,MA0109.1;0,MA0111.1;0.497884,MA0113.1;0.0812196,MA0114.1;0.210578,MA0115.1;0.0554827,MA0116.1;0.196379,MA0117.1;0.171574,MA0119.1;1.21185,MA0122.1;0.638947,MA0124.1;0.381663,MA0125.1;0.107618,MA0130.1;0,MA0131.1;0.0119233,MA0132.1;0,MA0133.1;0,MA0135.1;1.16859,MA0136.1;0.460863,MA0139.1;0.017412,MA0140.1;0.198525,MA0141.1;0.00542385,MA0142.1;2.72881,MA0143.1;0.23737,MA0144.1;0.00155508,MA0145.1;0.0115296,MA0146.1;4.76915e-06,MA0147.1;0.849806,MA0148.1;0.658818,MA0149.1;0.0653876,MA0062.2;9.96794e-06,MA0035.2;0.00765697,MA0039.2;1.34553e-12,MA0138.2;0.481532,MA0002.2;1.92564,MA0137.2;0.0250237,MA0104.2;0.359842,MA0047.2;2.00327,MA0112.2;0.00131258,MA0065.2;0.0456506,MA0150.1;0.0114929,MA0151.1;0,MA0152.1;0.138167,MA0153.1;0.0224175,MA0154.1;0.343801,MA0155.1;0.00160023,MA0156.1;0.352922,MA0157.1;0.18671,MA0158.1;0,MA0159.1;0.0613017,MA0160.1;0.447596,MA0161.1;0,MA0162.1;1.93604e-09,MA0163.1;0.000385012,MA0164.1;0.553472,MA0080.2;0.186567,MA0018.2;0.205087,MA0099.2;0.214848,MA0079.2;0,MA0102.2;0.189321,MA0258.1;0.085435,MA0259.1;0.252402,MA0442.1;0
}}
}}

Revision as of 18:16, 22 January 2013


Full id: C78_lymphoma_plasma_tonsil_appendix_lymph_seminal_trachea



Phase1 CAGE Peaks

Hg19::chr10:104408911..104408922,+p33@TRIM8
Hg19::chr10:73843883..73843895,-p@chr10:73843883..73843895
-
Hg19::chr11:114997342..114997344,-p@chr11:114997342..114997344
-
Hg19::chr11:117529753..117529772,+p@chr11:117529753..117529772
+
Hg19::chr11:117562371..117562376,+p@chr11:117562371..117562376
+
Hg19::chr11:117584498..117584510,-p@chr11:117584498..117584510
-
Hg19::chr11:117869110..117869140,+p@chr11:117869110..117869140
+
Hg19::chr11:117880947..117880949,+p@chr11:117880947..117880949
+
Hg19::chr11:117997240..117997243,+p@chr11:117997240..117997243
+
Hg19::chr11:14346810..14346831,-p@chr11:14346810..14346831
-
Hg19::chr11:44625962..44625976,+p3@CD82
Hg19::chr11:44626756..44626775,+p@chr11:44626756..44626775
+
Hg19::chr11:47540590..47540594,-p@chr11:47540590..47540594
-
Hg19::chr11:58869930..58869933,-p@chr11:58869930..58869933
-
Hg19::chr11:70309490..70309499,+p@chr11:70309490..70309499
+
Hg19::chr11:70309509..70309517,+p@chr11:70309509..70309517
+
Hg19::chr11:71932260..71932267,+p@chr11:71932260..71932267
+
Hg19::chr11:71932297..71932318,+p@chr11:71932297..71932318
+
Hg19::chr11:76849253..76849265,+p@chr11:76849253..76849265
+
Hg19::chr11:82682690..82682696,+p@chr11:82682690..82682696
+
Hg19::chr11:87069705..87069724,+p@chr11:87069705..87069724
+
Hg19::chr11:87070681..87070692,+p@chr11:87070681..87070692
+
Hg19::chr11:87070763..87070778,+p@chr11:87070763..87070778
+
Hg19::chr11:87070789..87070800,+p@chr11:87070789..87070800
+
Hg19::chr11:87070802..87070805,+p@chr11:87070802..87070805
+
Hg19::chr11:87070807..87070824,+p@chr11:87070807..87070824
+
Hg19::chr11:87070835..87070853,+p@chr11:87070835..87070853
+
Hg19::chr11:87139804..87139805,+p@chr11:87139804..87139805
+
Hg19::chr11:87149226..87149230,+p@chr11:87149226..87149230
+
Hg19::chr11:87288882..87288883,+p@chr11:87288882..87288883
+
Hg19::chr11:9630903..9630932,+p@chr11:9630903..9630932
+
Hg19::chr12:104806373..104806375,+p@chr12:104806373..104806375
+
Hg19::chr12:122429485..122429491,+p@chr12:122429485..122429491
+
Hg19::chr12:14818964..14818977,-p@chr12:14818964..14818977
-
Hg19::chr12:1635141..1635152,-p@chr12:1635141..1635152
-
Hg19::chr12:50616792..50616804,-p29@LIMA1
Hg19::chr12:6373654..6373663,-p@chr12:6373654..6373663
-
Hg19::chr12:6373673..6373676,-p@chr12:6373673..6373676
-
Hg19::chr13:111836521..111836524,+p@chr13:111836521..111836524
+
Hg19::chr13:20138987..20138997,-p4@CASC4P1
Hg19::chr13:30053711..30053718,+p14@MTUS2
Hg19::chr13:99772217..99772259,+p@chr13:99772217..99772259
+
Hg19::chr14:106829729..106829758,-p1@AF460702
p1@AF460703
p1@AF460708
p1@AF460709
p1@AF460728
p1@AF460785
p1@AF460821
p1@AF460837
p1@AY003807
p1@AY003817
Hg19::chr14:106830057..106830075,-p1@IGHV4-34
Hg19::chr14:106830186..106830197,+p@chr14:106830186..106830197
+
Hg19::chr14:22961783..22961799,+p2@TRAJ47
Hg19::chr14:68962457..68962464,-p@chr14:68962457..68962464
-
Hg19::chr15:31518293..31518296,-p@chr15:31518293..31518296
-
Hg19::chr15:33502141..33502147,-p@chr15:33502141..33502147
-
Hg19::chr15:44069156..44069208,-p1@ELL3
Hg19::chr15:52043573..52043583,-p16@LYSMD2
Hg19::chr15:52043594..52043603,-p13@LYSMD2
Hg19::chr15:52043631..52043657,-p5@LYSMD2
Hg19::chr15:55823075..55823084,-p@chr15:55823075..55823084
-
Hg19::chr15:55823098..55823101,-p@chr15:55823098..55823101
-
Hg19::chr15:55823115..55823128,-p@chr15:55823115..55823128
-
Hg19::chr15:55853684..55853690,-p@chr15:55853684..55853690
-
Hg19::chr15:55912113..55912120,-p@chr15:55912113..55912120
-
Hg19::chr15:56034498..56034508,-p8@PRTG
Hg19::chr15:56657670..56657684,+p2@TEX9
Hg19::chr15:56657750..56657757,+p6@TEX9
Hg19::chr15:56657762..56657777,+p3@TEX9
Hg19::chr15:56660199..56660216,+p@chr15:56660199..56660216
+
Hg19::chr15:59665311..59665320,-p6@MYO1E
Hg19::chr15:65598581..65598584,+p@chr15:65598581..65598584
+
Hg19::chr15:66639676..66639681,-p1@SCARNA14
Hg19::chr15:75045274..75045289,+p@chr15:75045274..75045289
+
Hg19::chr15:75045322..75045331,+p@chr15:75045322..75045331
+
Hg19::chr15:75045336..75045349,+p@chr15:75045336..75045349
+
Hg19::chr15:75090972..75090998,+p10@CSK
Hg19::chr15:79310342..79310352,-p17@RASGRF1
Hg19::chr15:79310355..79310371,-p11@RASGRF1
Hg19::chr15:79310374..79310377,-p36@RASGRF1
Hg19::chr15:80309724..80309729,+p@chr15:80309724..80309729
+
Hg19::chr15:80351292..80351293,+p@chr15:80351292..80351293
+
Hg19::chr15:80679172..80679178,+p@chr15:80679172..80679178
+
Hg19::chr15:92558635..92558641,-p@chr15:92558635..92558641
-
Hg19::chr15:94775536..94775559,+p@chr15:94775536..94775559
+
Hg19::chr16:10881531..10881535,+p@chr16:10881531..10881535
+
Hg19::chr16:11876415..11876429,-p7@ZC3H7A
Hg19::chr16:11876441..11876442,-p19@ZC3H7A
Hg19::chr16:14700008..14700028,-p@chr16:14700008..14700028
-
Hg19::chr16:14700034..14700044,-p@chr16:14700034..14700044
-
Hg19::chr16:3013625..3013631,+p@chr16:3013625..3013631
+
Hg19::chr16:81819275..81819302,+p6@PLCG2
Hg19::chr16:81819343..81819380,+p4@PLCG2
Hg19::chr17:71146957..71146959,-p@chr17:71146957..71146959
-
Hg19::chr18:31431849..31431857,+p@chr18:31431849..31431857
+
Hg19::chr18:31431876..31431886,+p@chr18:31431876..31431886
+
Hg19::chr18:31433349..31433357,-p@chr18:31433349..31433357
-
Hg19::chr18:53089770..53089786,-p65@TCF4
Hg19::chr18:53091056..53091059,-p@chr18:53091056..53091059
-
Hg19::chr18:53108451..53108463,+p@chr18:53108451..53108463
+
Hg19::chr18:55731673..55731688,+p@chr18:55731673..55731688
+
Hg19::chr18:57660580..57660582,+p@chr18:57660580..57660582
+
Hg19::chr18:60383513..60383553,+p7@PHLPP1
Hg19::chr18:60388140..60388163,+p@chr18:60388140..60388163
+
Hg19::chr18:60499385..60499426,+p21@PHLPP1
Hg19::chr18:66202348..66202355,-p@chr18:66202348..66202355
-
Hg19::chr19:19257943..19257954,-p@chr19:19257943..19257954
-
Hg19::chr1:180072160..180072175,-p@chr1:180072160..180072175
-
Hg19::chr1:180072332..180072341,+p@chr1:180072332..180072341
+
Hg19::chr1:180072353..180072366,+p@chr1:180072353..180072366
+
Hg19::chr1:182641988..182641999,-p9@RGS8
Hg19::chr1:182642017..182642048,-p4@RGS8
Hg19::chr1:186213525..186213537,-p@chr1:186213525..186213537
-
Hg19::chr1:208045570..208045580,+p@chr1:208045570..208045580
+
Hg19::chr1:210407452..210407474,-p4@C1orf133
Hg19::chr1:210407482..210407529,-p3@C1orf133
Hg19::chr1:226421173..226421184,+p@chr1:226421173..226421184
+
Hg19::chr1:245121040..245121045,+p@chr1:245121040..245121045
+
Hg19::chr1:32788347..32788349,+p@chr1:32788347..32788349
+
Hg19::chr1:51982974..51982989,-p@chr1:51982974..51982989
-
Hg19::chr20:42948601..42948615,-p@chr20:42948601..42948615
-
Hg19::chr20:45891250..45891274,-p32@ZMYND8
Hg19::chr20:46040915..46040932,-p1@ENST00000437920
Hg19::chr20:46040936..46040941,-p5@ENST00000437920
Hg19::chr20:46040959..46040976,-p2@ENST00000437920
Hg19::chr20:46041046..46041090,-p4@ENST00000437920
Hg19::chr20:46041421..46041448,-p3@ENST00000437920
Hg19::chr20:52681625..52681628,+p@chr20:52681625..52681628
+
Hg19::chr21:30494439..30494452,+p19@C21orf7
Hg19::chr21:37914899..37914918,-p12@CLDN14
Hg19::chr21:37915034..37915039,-p9@CLDN14
Hg19::chr21:37915073..37915087,-p2@CLDN14
Hg19::chr21:37915094..37915101,-p8@CLDN14
Hg19::chr21:37915193..37915204,-p4@CLDN14
Hg19::chr22:18256469..18256483,-p14@BID
Hg19::chr22:18279301..18279311,+p@chr22:18279301..18279311
+
Hg19::chr22:24145958..24145959,+p@chr22:24145958..24145959
+
Hg19::chr22:47165360..47165407,+p@chr22:47165360..47165407
+
Hg19::chr22:50149717..50149720,+p@chr22:50149717..50149720
+
Hg19::chr2:153399146..153399151,+p20@FMNL2
Hg19::chr2:20062898..20062903,-p@chr2:20062898..20062903
-
Hg19::chr2:31476953..31476977,+p@chr2:31476953..31476977
+
Hg19::chr2:54696946..54696961,+p@chr2:54696946..54696961
+
Hg19::chr2:54696969..54696979,+p@chr2:54696969..54696979
+
Hg19::chr2:55015300..55015317,+p@chr2:55015300..55015317
+
Hg19::chr2:55020539..55020543,+p@chr2:55020539..55020543
+
Hg19::chr2:55126919..55126921,+p@chr2:55126919..55126921
+
Hg19::chr2:55132376..55132377,+p@chr2:55132376..55132377
+
Hg19::chr2:61200338..61200343,+p@chr2:61200338..61200343
+
Hg19::chr2:64317528..64317532,-p@chr2:64317528..64317532
-
Hg19::chr2:64317558..64317577,-p@chr2:64317558..64317577
-
Hg19::chr2:89162439..89162454,-p@chr2:89162439..89162454
-
Hg19::chr2:89442468..89442511,-p1@L28043
p1@L28045
p1@L28046
p1@M26437
p1@M26438
p1@Z34913
Hg19::chr2:89442729..89442739,-p4@IGKV3-20
Hg19::chr2:89442808..89442811,-p3@IGKV3-20
Hg19::chr3:16476263..16476279,-p15@RFTN1
Hg19::chr3:16552633..16552645,-p@chr3:16552633..16552645
-
Hg19::chr3:16552661..16552674,-p@chr3:16552661..16552674
-
Hg19::chr3:16552683..16552697,-p@chr3:16552683..16552697
-
Hg19::chr3:170078965..170078975,+p23@SKIL
Hg19::chr3:170078979..170078989,+p24@SKIL
Hg19::chr3:17442152..17442172,+p@chr3:17442152..17442172
+
Hg19::chr3:188299733..188299736,-p@chr3:188299733..188299736
-
Hg19::chr3:194816001..194816012,+p@chr3:194816001..194816012
+
Hg19::chr3:195267526..195267531,+p@chr3:195267526..195267531
+
Hg19::chr3:30710958..30710960,-p@chr3:30710958..30710960
-
Hg19::chr3:31918351..31918363,-p13@OSBPL10
Hg19::chr3:31918364..31918375,-p9@OSBPL10
Hg19::chr3:31918379..31918390,-p10@OSBPL10
Hg19::chr3:53778605..53778645,+p@chr3:53778605..53778645
+
Hg19::chr5:130204823..130204828,-p@chr5:130204823..130204828
-
Hg19::chr5:133880087..133880098,+p23@PHF15
Hg19::chr5:133880100..133880110,+p28@PHF15
Hg19::chr5:133886807..133886836,+p@chr5:133886807..133886836
+
Hg19::chr5:171702188..171702197,-p@chr5:171702188..171702197
-
Hg19::chr5:177751110..177751118,-p@chr5:177751110..177751118
-
Hg19::chr5:35729957..35729972,+p@chr5:35729957..35729972
+
Hg19::chr5:79963994..79963998,-p@chr5:79963994..79963998
-
Hg19::chr5:96691647..96691659,+p@chr5:96691647..96691659
+
Hg19::chr6:119669325..119669334,-p@chr6:119669325..119669334
-
Hg19::chr6:134275379..134275381,-p@chr6:134275379..134275381
-
Hg19::chr6:135149663..135149673,-p@chr6:135149663..135149673
-
Hg19::chr6:150938045..150938069,+p@chr6:150938045..150938069
+
Hg19::chr6:159501980..159501983,-p@chr6:159501980..159501983
-
Hg19::chr6:166298831..166298836,-p@chr6:166298831..166298836
-
Hg19::chr6:1738561..1738567,-p@chr6:1738561..1738567
-
Hg19::chr6:1738571..1738593,-p@chr6:1738571..1738593
-
Hg19::chr6:31391394..31391405,-p@chr6:31391394..31391405
-
Hg19::chr6:73351184..73351201,+p@chr6:73351184..73351201
+
Hg19::chr7:101460965..101460970,+p@chr7:101460965..101460970
+
Hg19::chr7:101461135..101461143,+p@chr7:101461135..101461143
+
Hg19::chr7:101461145..101461152,+p@chr7:101461145..101461152
+
Hg19::chr7:101505970..101505985,+p@chr7:101505970..101505985
+
Hg19::chr7:101632822..101632825,-p@chr7:101632822..101632825
-
Hg19::chr7:101633370..101633404,+p@chr7:101633370..101633404
+
Hg19::chr7:101923267..101923278,+p@chr7:101923267..101923278
+
Hg19::chr7:101932726..101932729,+p@chr7:101932726..101932729
+
Hg19::chr7:101932743..101932764,+p@chr7:101932743..101932764
+
Hg19::chr7:102085675..102085686,-p@chr7:102085675..102085686
-
Hg19::chr7:17500294..17500304,-p1@ENST00000439046
Hg19::chr7:22401303..22401305,+p@chr7:22401303..22401305
+
Hg19::chr7:22475507..22475523,-p@chr7:22475507..22475523
-
Hg19::chr7:36232622..36232647,+p@chr7:36232622..36232647
+
Hg19::chr7:92157154..92157190,+p@chr7:92157154..92157190
+
Hg19::chr7:92157696..92157707,-p2@PEX1
Hg19::chr7:92157747..92157758,-p3@PEX1
Hg19::chr7:92157760..92157854,-p1@PEX1
Hg19::chr7:92158083..92158131,+p1@RBM48
Hg19::chr7:92193537..92193583,-p@chr7:92193537..92193583
-
Hg19::chr7:92219657..92219676,-p2@FAM133B
Hg19::chr7:92219698..92219713,-p1@FAM133B
Hg19::chr7:92442731..92442739,-p@chr7:92442731..92442739
-
Hg19::chr7:92442913..92442927,+p@chr7:92442913..92442927
+
Hg19::chr7:92462716..92462727,-p43@CDK6
Hg19::chr7:93652116..93652122,+p1@ENST00000415536
Hg19::chr7:96745751..96745755,-p@chr7:96745751..96745755
-
Hg19::chr7:98841121..98841133,+p@chr7:98841121..98841133
+
Hg19::chr7:98893457..98893458,-p@chr7:98893457..98893458
-
Hg19::chr7:98923353..98923362,-p@chr7:98923353..98923362
-
Hg19::chr7:98923527..98923537,-p@chr7:98923527..98923537
-
Hg19::chr7:98928556..98928573,-p@chr7:98928556..98928573
-
Hg19::chr8:11251617..11251658,+p1@C8orf12
Hg19::chr8:11251682..11251699,+p4@C8orf12
Hg19::chr8:129203016..129203026,-p@chr8:129203016..129203026
-
Hg19::chr8:133969805..133969816,+p@chr8:133969805..133969816
+
Hg19::chr8:135612764..135612786,-p@chr8:135612764..135612786
-
Hg19::chr8:23282797..23282803,-p37@LOXL2
Hg19::chr8:23282820..23282846,-p11@LOXL2
Hg19::chr8:2413422..2413469,-p@chr8:2413422..2413469
-
Hg19::chr8:2507680..2507685,+p@chr8:2507680..2507685
+
Hg19::chr8:59938345..59938387,-p@chr8:59938345..59938387
-
Hg19::chr9:139793773..139793811,+p@chr9:139793773..139793811
+
Hg19::chr9:140349856..140349859,-p36@NELF
Hg19::chr9:140349915..140349924,-p34@NELF
Hg19::chr9:37018564..37018568,-p@chr9:37018564..37018568
-
Hg19::chr9:37142974..37142987,+p@chr9:37142974..37142987
+
Hg19::chr9:37384457..37384469,-p1@ENST00000452923
Hg19::chr9:37409052..37409057,-p@chr9:37409052..37409057
-
Hg19::chr9:37409069..37409080,-p@chr9:37409069..37409080
-
Hg19::chr9:37422550..37422578,+p3@GRHPR
Hg19::chrX:14942624..14942635,-p@chrX:14942624..14942635
-
Hg19::chrX:1613261..1613278,-p3@P2RY8
Hg19::chrX:1613288..1613304,-p5@P2RY8
Hg19::chrX:33743841..33743886,-p@chrX:33743841..33743886
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005515protein binding0.00522293863227213
GO:0003779actin binding0.0453682444365949
GO:0007616long-term memory0.0453682444365949
GO:0016618hydroxypyruvate reductase activity0.0453682444365949
GO:0030267glyoxylate reductase (NADP) activity0.0453682444365949
GO:0043696dedifferentiation0.0453682444365949
GO:0043697cell dedifferentiation0.0453682444365949
GO:0008465glycerate dehydrogenase activity0.0453682444365949



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
lymphocyte of B lineage3.75e-1224
pro-B cell3.75e-1224
Uber Anatomy
Ontology termp-valuen
tonsil4.66e-661
mucosa-associated lymphoid tissue4.66e-661
lymphoid tissue4.66e-661
tonsillar ring4.66e-661
lymphoid system6.56e-0810
chordate pharynx6.56e-0810
pharyngeal region of foregut6.56e-0810
pharynx2.63e-0711
Disease
Ontology termp-valuen
lymphoma2.08e-2710


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.13.81273
MA0006.10.0230265
MA0007.10.320295
MA0009.11.3931
MA0014.11.7295e-09
MA0017.10.191226
MA0019.10.319752
MA0024.10.060328
MA0025.12.13582
MA0027.11.07859
MA0028.14.31896e-05
MA0029.10.0229732
MA0030.10.274221
MA0031.10.665163
MA0038.10.584986
MA0040.10.16709
MA0041.10.114757
MA0042.10.247328
MA0043.11.03981
MA0046.10.260554
MA0048.10.104833
MA0050.10.344382
MA0051.10.935009
MA0052.10.171731
MA0055.10.0242871
MA0056.10
MA0057.10.000309174
MA0058.11.63235
MA0059.10.366652
MA0060.10.241118
MA0061.16.43523
MA0063.10
MA0066.10.207283
MA0067.10.0813256
MA0068.10.00663377
MA0069.10.442509
MA0070.10.64949
MA0071.10.0201155
MA0072.10.635659
MA0073.10
MA0074.10.0350294
MA0076.10.00164769
MA0077.10.220712
MA0078.10.209675
MA0081.10.0396469
MA0083.10.142217
MA0084.10.168331
MA0087.10.107768
MA0088.10.194826
MA0089.10
MA0090.10.542327
MA0091.10.681071
MA0092.10.124848
MA0093.14.09822
MA0095.10
MA0098.10
MA0100.10.0884489
MA0101.13.30275
MA0103.16.38909
MA0105.12.42547
MA0106.14.91813
MA0107.13.98306
MA0108.20.893488
MA0109.10
MA0111.10.497884
MA0113.10.0812196
MA0114.10.210578
MA0115.10.0554827
MA0116.10.196379
MA0117.10.171574
MA0119.11.21185
MA0122.10.638947
MA0124.10.381663
MA0125.10.107618
MA0130.10
MA0131.10.0119233
MA0132.10
MA0133.10
MA0135.11.16859
MA0136.10.460863
MA0139.10.017412
MA0140.10.198525
MA0141.10.00542385
MA0142.12.72881
MA0143.10.23737
MA0144.10.00155508
MA0145.10.0115296
MA0146.14.76915e-06
MA0147.10.849806
MA0148.10.658818
MA0149.10.0653876
MA0062.29.96794e-06
MA0035.20.00765697
MA0039.21.34553e-12
MA0138.20.481532
MA0002.21.92564
MA0137.20.0250237
MA0104.20.359842
MA0047.22.00327
MA0112.20.00131258
MA0065.20.0456506
MA0150.10.0114929
MA0151.10
MA0152.10.138167
MA0153.10.0224175
MA0154.10.343801
MA0155.10.00160023
MA0156.10.352922
MA0157.10.18671
MA0158.10
MA0159.10.0613017
MA0160.10.447596
MA0161.10
MA0162.11.93604e-09
MA0163.10.000385012
MA0164.10.553472
MA0080.20.186567
MA0018.20.205087
MA0099.20.214848
MA0079.20
MA0102.20.189321
MA0258.10.085435
MA0259.10.252402
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
EBF1#1879481.803841386646893.87299504149435e-050.000727895859526054
MEF2A#4205231.818963337222840.004379298844662820.0207574472196487
POU2F2#5452411.575321039525080.002293136683786610.0130109687682941



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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