FFCP PHASE1:Mm9::chr19:8994951..8994963,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72727|HGNC=|UniProt=P58158,Q3USF3|association_with_transcript=68bp_to_NM_024256,uc008gnz.1,uc008goa.1,uc008gob.1_5end|description=CAGE_peak_4_at_B3gat3_5end|id=chr19:8994951..8994963,+|ontology_enrichment_celltype=CL:0000117!2.09e-10!23;CL:0000337!2.09e-10!23;CL:0000221!5.65e-09!44;CL:0000133!5.65e-09!44;CL:0002319!1.02e-08!43;CL:0000055!9.73e-08!50;CL:0000540!9.02e-07!33;CL:0000047!9.02e-07!33;CL:0000031!9.02e-07!33;CL:0000404!9.02e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,6.28e-16,23;CL:0000337,6.28e-16,23;CL:0000540,3.15e-10,33;CL:0000047,3.15e-10,33;CL:0000031,3.15e-10,33;CL:0000404,3.15e-10,33;CL:0002319,5.74e-10,43;CL:0000393,1.06e-09,39;CL:0000211,1.06e-09,39;CL:0000221,1.15e-09,44;CL:0000133,1.15e-09,44;CL:0002614,3.57e-09,3;CL:0002610,1.31e-08,3;CL:0002321,9.05e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.42e-16!75;UBERON:0001016!5.42e-16!75;UBERON:0001017!4.66e-15!73;UBERON:0005743!4.66e-15!73;UBERON:0000955!1.82e-14!50;UBERON:0006238!1.82e-14!50;UBERON:0001049!3.92e-14!52;UBERON:0005068!3.92e-14!52;UBERON:0006241!3.92e-14!52;UBERON:0007135!3.92e-14!52;UBERON:0002616!5.68e-14!49;UBERON:0002020!2.34e-12!34;UBERON:0000033!3.01e-12!63;UBERON:0004121!9.36e-12!102;UBERON:0000924!9.36e-12!102;UBERON:0006601!9.36e-12!102;UBERON:0002791!4.66e-11!29;UBERON:0003528!4.66e-11!29;UBERON:0001893!4.66e-11!29;UBERON:0002346!6.81e-11!71;UBERON:0003075!6.81e-11!71;UBERON:0007284!6.81e-11!71;UBERON:0003080!4.04e-10!40;UBERON:0002780!1.22e-09!39;UBERON:0001890!1.22e-09!39;UBERON:0006240!1.22e-09!39;UBERON:0003056!5.74e-09!49;UBERON:0007811!9.86e-08!86;UBERON:0000956!1.50e-07!21;UBERON:0001869!1.50e-07!21;UBERON:0000203!1.50e-07!21;UBERON:0000153!8.10e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.41e-17,73;UBERON:0000073,3.15e-17,54;UBERON:0001016,1.00e-16,75;UBERON:0002020,4.07e-15,34;UBERON:0001049,2.74e-14,52;UBERON:0005068,2.74e-14,52;UBERON:0006241,2.74e-14,52;UBERON:0007135,2.74e-14,52;UBERON:0004121,5.75e-12,95;UBERON:0000924,5.75e-12,95;UBERON:0006601,5.75e-12,95;UBERON:0003528,1.09e-11,29;UBERON:0002791,1.09e-11,29;UBERON:0001893,1.09e-11,29;UBERON:0002950,5.91e-11,4;UBERON:0001891,5.91e-11,4;UBERON:0009616,5.91e-11,4;UBERON:0010286,5.91e-11,4;UBERON:0002346,9.34e-11,64;UBERON:0003075,9.34e-11,64;UBERON:0007284,9.34e-11,64;UBERON:0002616,5.47e-10,46;UBERON:0000955,1.06e-09,47;UBERON:0006238,1.06e-09,47;UBERON:0002038,3.57e-09,3;UBERON:0009663,3.57e-09,3;UBERON:0009661,3.57e-09,3;UBERON:0000125,3.57e-09,3;UBERON:0002308,3.57e-09,3;UBERON:0003080,5.28e-09,40;UBERON:0010371,7.03e-09,73;UBERON:0004684,1.31e-08,3;UBERON:0002275,1.31e-08,3;UBERON:0002780,5.54e-08,39;UBERON:0001890,5.54e-08,39;UBERON:0006240,5.54e-08,39;UBERON:0000956,9.95e-08,21;UBERON:0001869,9.95e-08,21;UBERON:0000203,9.95e-08,21;UBERON:0010314,5.07e-07,92;UBERON:0003056,8.23e-07,49;UBERON:0002240,8.27e-07,6;UBERON:0005174,8.27e-07,6;UBERON:0001137,8.27e-07,6|phase1_expression=0.480446541314382,0.697950815278722,0.909998478779072,0,0,0.33575854382378,0,0.129123323441576,0,0,0.171217968225505,0.0797721589953364,0,0.0874204024189974,0.333109761815663,0.404950534779652,0,0.157731082679119,0,0,0.765389611359628,0.0992909512008853,0,0,0.22940928106717,0,1.7230479846363,0,0.190023419456374,0,0.443461021310609,0,0,0,0,0.166234645358492,0,0,0,0,1.17646297606203,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0.782391344348039,0.65407546914134,0.659058548203415,0.194429899074283,0.279972843250725,1.43752564364972,0.335565212115473,0,0,0,0,1.54701627683233,1.61853168687678,0.528990979272033,0.633831403506179,0.338844532069132,0.889294796111139,1.3498495759221,0,0.7104801149461,1.79760066311043,0,1.03689612308478,0.270011876663381,1.26194976810829,1.42825492201902,0.883474163806454,0.734944795289724,0.479227355091182,0.919218786610021,1.10115880999389,4.59674417106676,3.5329502648936,0.527545150920775,0.823388792421687,1.04182674111352,3.90856198601933,2.25105044012672,2.90316670775939,0,1.28134512719193,2.05039390407831,0.832988126665025,0.906858721281426,0,1.72084775396277,0.679971333707751,0,0,0,0.561777680527007,0.170430322578058,0.519572009205738,0,0.563373679106722,0,2.54805239706646,0,0.649473123033642,0,2.02209778005913,0.34255163915718,0,0.593768556259299,0.346970653532272,0.304465478312141,0.230615497256059,0.452167921657868,0,0,0.247194967734374,0,0.884610551949874,0.647067399789637,0.220841518460394,0,0,0.292780797011547,0.628340120440365,0,0,0.599902730993408,0,1.04853447583376,0.457500602818626,0.628271760564322,1.04294592115366,1.53429274398198,0.62336413367868,0.648965052271031,0.203678727700633,0,0,0.420883711772948,0.260240885925407,0.459804208866946,0.360124259610698,0.150704817835715,0.272145996605311,0.12811372028485,0.281105173679186,0,0.431135985865684,0.567318240503458,0.175951124163949,0.657587197282725,0,0,0,0,0,0,0.852490498186778,0.414251545071004,0.234526059981096,0.36012412292203,0.23674473558521,0.78705692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| ||
|EntrezGene=72727 | |||
|HGNC= | |||
|UniProt=P58158,Q3USF3 | |||
|association_with_transcript=68bp_to_NM_024256,uc008gnz.1,uc008goa.1,uc008gob.1_5end | |||
|description=CAGE_peak_4_at_B3gat3_5end | |||
|id=chr19:8994951..8994963,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.09e-10!23;CL:0000337!2.09e-10!23;CL:0000221!5.65e-09!44;CL:0000133!5.65e-09!44;CL:0002319!1.02e-08!43;CL:0000055!9.73e-08!50;CL:0000540!9.02e-07!33;CL:0000047!9.02e-07!33;CL:0000031!9.02e-07!33;CL:0000404!9.02e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.28e-16,23;CL:0000337,6.28e-16,23;CL:0000540,3.15e-10,33;CL:0000047,3.15e-10,33;CL:0000031,3.15e-10,33;CL:0000404,3.15e-10,33;CL:0002319,5.74e-10,43;CL:0000393,1.06e-09,39;CL:0000211,1.06e-09,39;CL:0000221,1.15e-09,44;CL:0000133,1.15e-09,44;CL:0002614,3.57e-09,3;CL:0002610,1.31e-08,3;CL:0002321,9.05e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.42e-16!75;UBERON:0001016!5.42e-16!75;UBERON:0001017!4.66e-15!73;UBERON:0005743!4.66e-15!73;UBERON:0000955!1.82e-14!50;UBERON:0006238!1.82e-14!50;UBERON:0001049!3.92e-14!52;UBERON:0005068!3.92e-14!52;UBERON:0006241!3.92e-14!52;UBERON:0007135!3.92e-14!52;UBERON:0002616!5.68e-14!49;UBERON:0002020!2.34e-12!34;UBERON:0000033!3.01e-12!63;UBERON:0004121!9.36e-12!102;UBERON:0000924!9.36e-12!102;UBERON:0006601!9.36e-12!102;UBERON:0002791!4.66e-11!29;UBERON:0003528!4.66e-11!29;UBERON:0001893!4.66e-11!29;UBERON:0002346!6.81e-11!71;UBERON:0003075!6.81e-11!71;UBERON:0007284!6.81e-11!71;UBERON:0003080!4.04e-10!40;UBERON:0002780!1.22e-09!39;UBERON:0001890!1.22e-09!39;UBERON:0006240!1.22e-09!39;UBERON:0003056!5.74e-09!49;UBERON:0007811!9.86e-08!86;UBERON:0000956!1.50e-07!21;UBERON:0001869!1.50e-07!21;UBERON:0000203!1.50e-07!21;UBERON:0000153!8.10e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.41e-17,73;UBERON:0000073,3.15e-17,54;UBERON:0001016,1.00e-16,75;UBERON:0002020,4.07e-15,34;UBERON:0001049,2.74e-14,52;UBERON:0005068,2.74e-14,52;UBERON:0006241,2.74e-14,52;UBERON:0007135,2.74e-14,52;UBERON:0004121,5.75e-12,95;UBERON:0000924,5.75e-12,95;UBERON:0006601,5.75e-12,95;UBERON:0003528,1.09e-11,29;UBERON:0002791,1.09e-11,29;UBERON:0001893,1.09e-11,29;UBERON:0002950,5.91e-11,4;UBERON:0001891,5.91e-11,4;UBERON:0009616,5.91e-11,4;UBERON:0010286,5.91e-11,4;UBERON:0002346,9.34e-11,64;UBERON:0003075,9.34e-11,64;UBERON:0007284,9.34e-11,64;UBERON:0002616,5.47e-10,46;UBERON:0000955,1.06e-09,47;UBERON:0006238,1.06e-09,47;UBERON:0002038,3.57e-09,3;UBERON:0009663,3.57e-09,3;UBERON:0009661,3.57e-09,3;UBERON:0000125,3.57e-09,3;UBERON:0002308,3.57e-09,3;UBERON:0003080,5.28e-09,40;UBERON:0010371,7.03e-09,73;UBERON:0004684,1.31e-08,3;UBERON:0002275,1.31e-08,3;UBERON:0002780,5.54e-08,39;UBERON:0001890,5.54e-08,39;UBERON:0006240,5.54e-08,39;UBERON:0000956,9.95e-08,21;UBERON:0001869,9.95e-08,21;UBERON:0000203,9.95e-08,21;UBERON:0010314,5.07e-07,92;UBERON:0003056,8.23e-07,49;UBERON:0002240,8.27e-07,6;UBERON:0005174,8.27e-07,6;UBERON:0001137,8.27e-07,6 | |||
|phase1_expression=0.480446541314382,0.697950815278722,0.909998478779072,0,0,0.33575854382378,0,0.129123323441576,0,0,0.171217968225505,0.0797721589953364,0,0.0874204024189974,0.333109761815663,0.404950534779652,0,0.157731082679119,0,0,0.765389611359628,0.0992909512008853,0,0,0.22940928106717,0,1.7230479846363,0,0.190023419456374,0,0.443461021310609,0,0,0,0,0.166234645358492,0,0,0,0,1.17646297606203,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0.782391344348039,0.65407546914134,0.659058548203415,0.194429899074283,0.279972843250725,1.43752564364972,0.335565212115473,0,0,0,0,1.54701627683233,1.61853168687678,0.528990979272033,0.633831403506179,0.338844532069132,0.889294796111139,1.3498495759221,0,0.7104801149461,1.79760066311043,0,1.03689612308478,0.270011876663381,1.26194976810829,1.42825492201902,0.883474163806454,0.734944795289724,0.479227355091182,0.919218786610021,1.10115880999389,4.59674417106676,3.5329502648936,0.527545150920775,0.823388792421687,1.04182674111352,3.90856198601933,2.25105044012672,2.90316670775939,0,1.28134512719193,2.05039390407831,0.832988126665025,0.906858721281426,0,1.72084775396277,0.679971333707751,0,0,0,0.561777680527007,0.170430322578058,0.519572009205738,0,0.563373679106722,0,2.54805239706646,0,0.649473123033642,0,2.02209778005913,0.34255163915718,0,0.593768556259299,0.346970653532272,0.304465478312141,0.230615497256059,0.452167921657868,0,0,0.247194967734374,0,0.884610551949874,0.647067399789637,0.220841518460394,0,0,0.292780797011547,0.628340120440365,0,0,0.599902730993408,0,1.04853447583376,0.457500602818626,0.628271760564322,1.04294592115366,1.53429274398198,0.62336413367868,0.648965052271031,0.203678727700633,0,0,0.420883711772948,0.260240885925407,0.459804208866946,0.360124259610698,0.150704817835715,0.272145996605311,0.12811372028485,0.281105173679186,0,0.431135985865684,0.567318240503458,0.175951124163949,0.657587197282725,0,0,0,0,0,0,0.852490498186778,0.414251545071004,0.234526059981096,0.36012412292203,0.23674473558521,0.787056926989615,0,0,0.804820204198858,0.467061369468678,0.658239399653922,0.164167464079095,0.56748166682099,0.146199987425332,0.219550115291051,0.805238512562231,1.05144974282064,0.514523061896422,0.330418782983798,0,0,0.232236671860439,0.128867461322093,0.201683524623343,0.22237804384487,0.190225626112559,0,0.164698954724011,0.502670417600539,0,0.38992817423824,0,0,0.398282546508734,0,0.114248512609729,0,0.203651327845314,0,0.280543279561274,0.252946148497029,0,0.156998727841375,0.370191491765402,0,0,0.393117990226406,0,0,0,0.763877555344259,0,0,0,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0.964887042726734,0,0,0.325929952884052,0,0.469380496577004,0.335012514883631,0.238043640886014,0.390267295715598,0,0.221464689648775,0.318909537314974,0.327726629431476,0.172684981865896,0,0,0,0,0,1.28440471990234,1.17211686592203,0,1.00988370881749,0.315508219416257,0,0,0,0,0.283076530788832,0.404810701674894,0.584511715822624,0,0.963963949265421,0.141940085208269,0.534196811001766,0.325773918707152,0.164970122972535,1.32745138339963,0.242780636154981,0,0,0,0.307435147943927,0,0,0.356497378384721,0.316036757935816,0,2.06271086496374,0,0.18006109403131,0.517434735131018,0.214337035031592,0.354680467284547,0.178368817602071,0,0.608929898229199,0,0,0.441056796109924,0.16488625294148,0.161464426695906,0.120625849856312,0.119372344003136,0.328281799490123,0,1.48340241608408,0.170870880797853,0.206386867963223,0.370389054739423,0.188368457004691,0.27338845544205,0,0,0.139951452323658,0.552799895217695,0,0.158167996790568,0.813277868507395,0.216010681643603,0.209088296014469,0,0.404593039154462,0.0826534557253359,0,0.259229946583586,0,0,0.149516546043979,0.330916980914195,0,0.258319646955462,0.506868376472335,0.117357238645754,0.5208175393758,0.104859344425711,0.241584120826006,0,0.316011120628178,0.405450430580328,0.205421914329655,0.25984164595559,0.537080087002444,0.198681354781265,0.240390899039938,0.295379054349154,0,0,0,0,0.384847366561318,0.233753804363138,0,0.221985953374065,0.358855426437903,0.335769232728157,0.386379188064381,0.187682475451182,0.183151624267265,0,0,0.564751842617067,0,0.572895513439397,1.71853182343688,1.37016503954128,0.755393897389701,0.675022500231806,1.80128481289688,1.35942722695261,2.5888015587591,0.415149390336707,0.399024873401031,0.170733605754134,0,0.209613162627982,0,0.666740183404846,0.206035057238894,0.320919209591815,0.252697211763798,0,0.188626341386076,0.187283014939765,0.704276676453562,0.516919220600519,0,0.695305955669133,0.964546102318525,0.412085900803307,0.294397840268795,0.342869252385415,0.532427418478012,0,0.145346416632329,0.188218760830661,0.169229215783353,0,0.526139422875686,0.407412341537585,0,0.237270036248348,0.492522411877817,0,0.154936841185966,0.578719832943424,0.499621155875892,0.233931608445408,0.429742108096597,0.57386499620653,0.441182838239031,0.463735671240843 | |||
|short_description=p4@B3gat3 | |||
}} |
Revision as of 18:29, 13 September 2013
Short description: | p4@B3gat3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_B3gat3_5end |
Coexpression cluster: | NA |
Association with transcript: | 68bp_to_NM_024256, uc008gnz.1, uc008goa.1, uc008gob.1_5end |
EntrezGene: | B3gat3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.28e-16 | 23 |
neuroblast (sensu Vertebrata) | 6.28e-16 | 23 |
neuron | 3.15e-10 | 33 |
neuronal stem cell | 3.15e-10 | 33 |
neuroblast | 3.15e-10 | 33 |
electrically signaling cell | 3.15e-10 | 33 |
neural cell | 5.74e-10 | 43 |
electrically responsive cell | 1.06e-09 | 39 |
electrically active cell | 1.06e-09 | 39 |
ectodermal cell | 1.15e-09 | 44 |
neurectodermal cell | 1.15e-09 | 44 |
neuron of the substantia nigra | 3.57e-09 | 3 |
raphe nuclei neuron | 1.31e-08 | 3 |
embryonic cell | 9.05e-08 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.