FFCP PHASE1:Mm9::chr18:38761259..38761273,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71302|HGNC=|MCL_coexpression_id=361|UniProt=|association_with_transcript=2bp_to_ENSMUST00000127448_5end|description=CAGE_peak_2_at_Arhgap26_5end|id=chr18:38761259..38761273,+|ontology_enrichment_celltype=CL:0000055!4.42e-08!50;CL:0002319!9.83e-08!43;CL:0000221!2.34e-07!44;CL:0000133!2.34e-07!44;CL:0000393!7.59e-07!39;CL:0000211!7.59e-07!39|ontology_enrichment_celltype_v019_2=CL:0002319,7.83e-08,43;CL:0000221,2.32e-07,44;CL:0000133,2.32e-07,44;CL:0000393,6.42e-07,39;CL:0000211,6.42e-07,39;CL:0000540,7.95e-07,33;CL:0000047,7.95e-07,33;CL:0000031,7.95e-07,33;CL:0000404,7.95e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!9.48e-23!75;UBERON:0001016!9.48e-23!75;UBERON:0001017!1.44e-22!73;UBERON:0005743!1.44e-22!73;UBERON:0004121!7.41e-21!102;UBERON:0000924!7.41e-21!102;UBERON:0006601!7.41e-21!102;UBERON:0002346!5.31e-19!71;UBERON:0003075!5.31e-19!71;UBERON:0007284!5.31e-19!71;UBERON:0001049!1.60e-15!52;UBERON:0005068!1.60e-15!52;UBERON:0006241!1.60e-15!52;UBERON:0007135!1.60e-15!52;UBERON:0000033!1.37e-14!63;UBERON:0000955!4.39e-14!50;UBERON:0006238!4.39e-14!50;UBERON:0002616!1.78e-13!49;UBERON:0003056!2.40e-11!49;UBERON:0003080!6.64e-10!40;UBERON:0002780!2.61e-09!39;UBERON:0001890!2.61e-09!39;UBERON:0006240!2.61e-09!39;UBERON:0000468!3.08e-09!333;UBERON:0002020!9.43e-09!34;UBERON:0000025!1.57e-08!114;UBERON:0004111!1.09e-07!122;UBERON:0000922!3.17e-07!328;UBERON:0002021!3.19e-07!10;UBERON:0000411!3.19e-07!10;UBERON:0001950!3.19e-07!10;UBERON:0003076!5.83e-07!12;UBERON:0003057!5.83e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.51e-24,75;UBERON:0001017,4.06e-24,73;UBERON:0002346,5.17e-20,64;UBERON:0003075,5.17e-20,64;UBERON:0007284,5.17e-20,64;UBERON:0004121,2.93e-19,95;UBERON:0000924,2.93e-19,95;UBERON:0006601,2.93e-19,95;UBERON:0000073,3.06e-17,54;UBERON:0001049,1.07e-16,52;UBERON:0005068,1.07e-16,52;UBERON:0006241,1.07e-16,52;UBERON:0007135,1.07e-16,52;UBERON:0010314,1.01e-15,92;UBERON:0010371,2.50e-15,73;UBERON:0000955,7.28e-14,47;UBERON:0006238,7.28e-14,47;UBERON:0002616,3.31e-13,46;UBERON:0003056,4.30e-12,49;UBERON:0003080,1.77e-10,40;UBERON:0002780,8.00e-10,39;UBERON:0001890,8.00e-10,39;UBERON:0006240,8.00e-10,39;UBERON:0002020,3.43e-09,34;UBERON:0002021,6.80e-08,10;UBERON:0000411,6.80e-08,10;UBERON:0001950,6.80e-08,10;UBERON:0003076,1.33e-07,12;UBERON:0003057,1.33e-07,12;UBERON:0000025,7.04e-07,114;UBERON:0003528,8.95e-07,29;UBERON:0002791,8.95e-07,29;UBERON:0001893,8.95e-07,29|phase1_expression=3.52327463630547,0,0,0,0.500895729946347,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38121212422995,0,0,0.159992422793407,0,0,0,0,0,0,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,2.39203954153597,1.52065396829272,0.734187008646726,2.34717403304412,1.96222640742402,2.63623419281366,2.72201858703997,2.51975558925653,1.43752564364972,0.167782606057736,0,0,2.57259436035947,2.57880095944881,1.03134418455488,2.42779753031517,1.5869729378161,3.1691570175309,3.38844532069132,0.889294796111139,0,0,1.4209602298922,0.898800331555214,2.68952813725088,0.622137673850866,0.135005938331691,0.841299845405528,5.42736870367227,3.97563373712904,0.244981598429908,0.479227355091182,0,2.20231761998777,4.85211884723713,3.5329502648936,1.31886287730194,1.18933936683133,1.04182674111352,5.30447698102624,5.06486349028512,7.33431589328689,5.59794312399969,5.83723891276322,2.98239113320481,1.4387976733305,2.41828992341714,2.89864488701678,1.72084775396277,0,0,0,0.448026887097336,0.140444420131752,0.511290967734173,0.519572009205738,0.35333957451034,0.422530259330042,0,0,0,2.59789249213457,3.80039798212648,4.04419556011827,0.22836775943812,0,1.7813056687779,0.867426633830679,2.43572382649713,3.45923245884088,1.50722640552623,1.99900802130698,1.75933227861546,0.494389935468748,0.289198713839823,0.884610551949874,1.29413479957927,0,0.484875253135222,1.86391761218122,5.85561594023094,4.1889341362691,0,0,0,0,11.2342979553617,3.66000482254901,2.1361239859187,8.8650403298061,7.16003280524926,10.8049783170971,4.54275536589721,1.52759045775474,0.995255764880744,2.27450482590307,1.05220927943237,2.34216797332867,1.83921683546778,3.06105620669094,3.76762044589288,2.4493139694478,3.45907044769094,2.34254311399322,1.03481348295606,3.01795190105979,4.16033376369202,5.27853372491847,1.97276159184817,3.05851974148158,5.57203466435466,2.46938563689532,3.98068533636986,0,0,0,1.24275463521301,1.87620847984877,0.900310307305074,1.18372367792605,0.983821158737019,0.925602677324269,0.697601834251224,1.60964040839772,1.40118410840603,1.48103864922132,1.47750717671186,0.972825714550269,0.146199987425332,1.09775057645525,0.268412837520744,2.73376933133365,5.65975368086064,0,0.264450566663544,2.34617075588757,2.32236671860439,1.67527699718721,1.00841762311671,0.889512175379481,0.570676878337677,0.474529061544512,0.658795818896044,1.00534083520108,0.994782360205754,0.58489226135736,0,0.432276099749388,0,2.65535061334314,3.19895835307241,5.6353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| ||
|EntrezGene=71302 | |||
|HGNC= | |||
|MCL_coexpression_id=361 | |||
|UniProt= | |||
|association_with_transcript=2bp_to_ENSMUST00000127448_5end | |||
|description=CAGE_peak_2_at_Arhgap26_5end | |||
|id=chr18:38761259..38761273,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.42e-08!50;CL:0002319!9.83e-08!43;CL:0000221!2.34e-07!44;CL:0000133!2.34e-07!44;CL:0000393!7.59e-07!39;CL:0000211!7.59e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,7.83e-08,43;CL:0000221,2.32e-07,44;CL:0000133,2.32e-07,44;CL:0000393,6.42e-07,39;CL:0000211,6.42e-07,39;CL:0000540,7.95e-07,33;CL:0000047,7.95e-07,33;CL:0000031,7.95e-07,33;CL:0000404,7.95e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.48e-23!75;UBERON:0001016!9.48e-23!75;UBERON:0001017!1.44e-22!73;UBERON:0005743!1.44e-22!73;UBERON:0004121!7.41e-21!102;UBERON:0000924!7.41e-21!102;UBERON:0006601!7.41e-21!102;UBERON:0002346!5.31e-19!71;UBERON:0003075!5.31e-19!71;UBERON:0007284!5.31e-19!71;UBERON:0001049!1.60e-15!52;UBERON:0005068!1.60e-15!52;UBERON:0006241!1.60e-15!52;UBERON:0007135!1.60e-15!52;UBERON:0000033!1.37e-14!63;UBERON:0000955!4.39e-14!50;UBERON:0006238!4.39e-14!50;UBERON:0002616!1.78e-13!49;UBERON:0003056!2.40e-11!49;UBERON:0003080!6.64e-10!40;UBERON:0002780!2.61e-09!39;UBERON:0001890!2.61e-09!39;UBERON:0006240!2.61e-09!39;UBERON:0000468!3.08e-09!333;UBERON:0002020!9.43e-09!34;UBERON:0000025!1.57e-08!114;UBERON:0004111!1.09e-07!122;UBERON:0000922!3.17e-07!328;UBERON:0002021!3.19e-07!10;UBERON:0000411!3.19e-07!10;UBERON:0001950!3.19e-07!10;UBERON:0003076!5.83e-07!12;UBERON:0003057!5.83e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.51e-24,75;UBERON:0001017,4.06e-24,73;UBERON:0002346,5.17e-20,64;UBERON:0003075,5.17e-20,64;UBERON:0007284,5.17e-20,64;UBERON:0004121,2.93e-19,95;UBERON:0000924,2.93e-19,95;UBERON:0006601,2.93e-19,95;UBERON:0000073,3.06e-17,54;UBERON:0001049,1.07e-16,52;UBERON:0005068,1.07e-16,52;UBERON:0006241,1.07e-16,52;UBERON:0007135,1.07e-16,52;UBERON:0010314,1.01e-15,92;UBERON:0010371,2.50e-15,73;UBERON:0000955,7.28e-14,47;UBERON:0006238,7.28e-14,47;UBERON:0002616,3.31e-13,46;UBERON:0003056,4.30e-12,49;UBERON:0003080,1.77e-10,40;UBERON:0002780,8.00e-10,39;UBERON:0001890,8.00e-10,39;UBERON:0006240,8.00e-10,39;UBERON:0002020,3.43e-09,34;UBERON:0002021,6.80e-08,10;UBERON:0000411,6.80e-08,10;UBERON:0001950,6.80e-08,10;UBERON:0003076,1.33e-07,12;UBERON:0003057,1.33e-07,12;UBERON:0000025,7.04e-07,114;UBERON:0003528,8.95e-07,29;UBERON:0002791,8.95e-07,29;UBERON:0001893,8.95e-07,29 | |||
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| |||
|short_description=p2@Arhgap26 | |||
}} |
Revision as of 16:09, 13 September 2013
Short description: | p2@Arhgap26 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Arhgap26_5end |
Coexpression cluster: | MCL_coexpression_mm9:361 |
Association with transcript: | 2bp_to_ENSMUST00000127448_5end |
EntrezGene: | Arhgap26 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 7.83e-08 | 43 |
ectodermal cell | 2.32e-07 | 44 |
neurectodermal cell | 2.32e-07 | 44 |
electrically responsive cell | 6.42e-07 | 39 |
electrically active cell | 6.42e-07 | 39 |
neuron | 7.95e-07 | 33 |
neuronal stem cell | 7.95e-07 | 33 |
neuroblast | 7.95e-07 | 33 |
electrically signaling cell | 7.95e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.51e-24 | 75 |
central nervous system | 4.06e-24 | 73 |
neurectoderm | 5.17e-20 | 64 |
neural plate | 5.17e-20 | 64 |
presumptive neural plate | 5.17e-20 | 64 |
ectoderm-derived structure | 2.93e-19 | 95 |
ectoderm | 2.93e-19 | 95 |
presumptive ectoderm | 2.93e-19 | 95 |
regional part of nervous system | 3.06e-17 | 54 |
neural tube | 1.07e-16 | 52 |
neural rod | 1.07e-16 | 52 |
future spinal cord | 1.07e-16 | 52 |
neural keel | 1.07e-16 | 52 |
structure with developmental contribution from neural crest | 1.01e-15 | 92 |
ecto-epithelium | 2.50e-15 | 73 |
brain | 7.28e-14 | 47 |
future brain | 7.28e-14 | 47 |
regional part of brain | 3.31e-13 | 46 |
pre-chordal neural plate | 4.30e-12 | 49 |
anterior neural tube | 1.77e-10 | 40 |
regional part of forebrain | 8.00e-10 | 39 |
forebrain | 8.00e-10 | 39 |
future forebrain | 8.00e-10 | 39 |
gray matter | 3.43e-09 | 34 |
occipital lobe | 6.80e-08 | 10 |
visual cortex | 6.80e-08 | 10 |
neocortex | 6.80e-08 | 10 |
posterior neural tube | 1.33e-07 | 12 |
chordal neural plate | 1.33e-07 | 12 |
tube | 7.04e-07 | 114 |
brain grey matter | 8.95e-07 | 29 |
regional part of telencephalon | 8.95e-07 | 29 |
telencephalon | 8.95e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.