FFCP PHASE1:Mm9::chr4:34016561..34016565,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=923|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:34016561..34016565,+|id=chr4:34016561..34016565,+|ontology_enrichment_celltype=CL:0000540!1.68e-12!33;CL:0000047!1.68e-12!33;CL:0000031!1.68e-12!33;CL:0000404!1.68e-12!33;CL:0000393!6.09e-10!39;CL:0000211!6.09e-10!39;CL:0000117!1.70e-09!23;CL:0000337!1.70e-09!23;CL:0000221!9.12e-09!44;CL:0000133!9.12e-09!44;CL:0002319!1.32e-08!43;CL:0000055!9.44e-07!50|ontology_enrichment_celltype_v019_2=CL:0002609,1.18e-14,6;CL:0000117,6.80e-14,23;CL:0000337,6.80e-14,23;CL:0000540,8.61e-12,33;CL:0000047,8.61e-12,33;CL:0000031,8.61e-12,33;CL:0000404,8.61e-12,33;CL:0000393,8.43e-10,39;CL:0000211,8.43e-10,39;CL:0002319,8.84e-09,43;CL:0000221,1.49e-08,44;CL:0000133,1.49e-08,44;CL:0002614,9.44e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!5.68e-17!102;UBERON:0000924!5.68e-17!102;UBERON:0006601!5.68e-17!102;UBERON:0001017!2.64e-16!73;UBERON:0005743!2.64e-16!73;UBERON:0000073!4.80e-16!75;UBERON:0001016!4.80e-16!75;UBERON:0002346!4.97e-16!71;UBERON:0003075!4.97e-16!71;UBERON:0007284!4.97e-16!71;UBERON:0002020!7.70e-15!34;UBERON:0002791!6.48e-14!29;UBERON:0003528!6.48e-14!29;UBERON:0001893!6.48e-14!29;UBERON:0001049!1.70e-12!52;UBERON:0005068!1.70e-12!52;UBERON:0006241!1.70e-12!52;UBERON:0007135!1.70e-12!52;UBERON:0000955!1.88e-12!50;UBERON:0006238!1.88e-12!50;UBERON:0002780!2.06e-12!39;UBERON:0001890!2.06e-12!39;UBERON:0006240!2.06e-12!39;UBERON:0002616!5.06e-12!49;UBERON:0000033!7.51e-12!63;UBERON:0003080!7.99e-12!40;UBERON:0003056!4.10e-10!49;UBERON:0000956!8.29e-10!21;UBERON:0001869!8.29e-10!21;UBERON:0000203!8.29e-10!21;UBERON:0002021!6.99e-07!10;UBERON:0000411!6.99e-07!10;UBERON:0001950!6.99e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0003528,3.03e-24,29;UBERON:0002791,3.03e-24,29;UBERON:0001893,3.03e-24,29;UBERON:0002020,3.26e-24,34;UBERON:0001049,7.26e-21,52;UBERON:0005068,7.26e-21,52;UBERON:0006241,7.26e-21,52;UBERON:0007135,7.26e-21,52;UBERON:0002616,1.49e-20,46;UBERON:0000955,4.47e-20,47;UBERON:0006238,4.47e-20,47;UBERON:0000073,5.08e-20,54;UBERON:0002780,1.28e-17,39;UBERON:0001890,1.28e-17,39;UBERON:0006240,1.28e-17,39;UBERON:0003080,3.89e-17,40;UBERON:0002346,1.39e-16,64;UBERON:0003075,1.39e-16,64;UBERON:0007284,1.39e-16,64;UBERON:0001017,2.17e-16,73;UBERON:0001016,6.73e-16,75;UBERON:0000956,3.80e-15,21;UBERON:0001869,3.80e-15,21;UBERON:0000203,3.80e-15,21;UBERON:0010371,2.73e-14,73;UBERON:0003056,1.10e-13,49;UBERON:0004121,4.15e-12,95;UBERON:0000924,4.15e-12,95;UBERON:0006601,4.15e-12,95;UBERON:0010314,6.54e-11,92;UBERON:0002420,1.56e-10,8;UBERON:0007245,1.56e-10,8;UBERON:0010009,1.56e-10,8;UBERON:0010011,1.56e-10,8;UBERON:0000454,1.56e-10,8;UBERON:0000025,9.00e-10,114;UBERON:0004111,5.51e-09,122;UBERON:0002038,9.44e-08,3;UBERON:0009663,9.44e-08,3;UBERON:0009661,9.44e-08,3;UBERON:0000125,9.44e-08,3;UBERON:0002308,9.44e-08,3;UBERON:0002619,2.10e-07,17|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0.286533439938757,0,0.404632921719196,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,5.18448061542388,2.56511282830212,3.57552434297349,0,0.220868540951614,1.34739879136449,0.287536413054709,0,0,0.383062014255563,0.153606533256243,1.71452174049252,0.731901148819277,0,0.279182999001381,1.12552522006336,1.83357897332172,0.294628585473668,0.142371680799103,2.05039390407831,0.151452386666368,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0.505524445014783,0,0,0.593768556259299,0.173485326766136,0.608930956624282,0.461230994512117,0.753613202763113,0.352766121407114,0.251333182659351,0,0,0,0,0,0,0,2.63502717310392,4.39838084308256,0,0,0,0,0,1.37250180845588,0.376963056338593,0.695297280769106,0.255715457330331,0.62336413367868,0.162241263067758,0.407357455401265,0,0.252722758433675,0,0,0,0,0.452114453507145,0.204109497453984,0,0.374806898238915,0,0,0.189106080167819,0,0.219195732427575,0,0,0.205782136407943,0.398068533636986,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54356918568927,0,0,0,0,0,0,0,0,0,0.164698954724011,0.754005626400808,0.198956472041151,0.19496408711912,0,0,0,0,0,0,0.203651327845314,0.193952487167626,0,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0.274561413188081,1.43768206527355,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0.44292937929755,0.159454768657487,0.163863314715738,0.172684981865896,0.289298117163023,0,0,0,0,0,0.117211686592203,0,0,0.94652465824877,0.390438744296638,0.215423397732799,0,1.11399337041197,0,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0,0.35613120733451,0.81443479676788,0,0,0.242780636154981,0.302323556964751,0.188605079755898,0,0,0,0,0,0,0,0,0,0.36012218806262,0,0,0,0.356737635204141,0.164549020602121,0,0,0,0,0,0,0.120625849856312,0.238744688006273,0,0,0,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0,0,0.324016022465404,0,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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=923 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:34016561..34016565,+ | |||
|id=chr4:34016561..34016565,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.68e-12!33;CL:0000047!1.68e-12!33;CL:0000031!1.68e-12!33;CL:0000404!1.68e-12!33;CL:0000393!6.09e-10!39;CL:0000211!6.09e-10!39;CL:0000117!1.70e-09!23;CL:0000337!1.70e-09!23;CL:0000221!9.12e-09!44;CL:0000133!9.12e-09!44;CL:0002319!1.32e-08!43;CL:0000055!9.44e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,1.18e-14,6;CL:0000117,6.80e-14,23;CL:0000337,6.80e-14,23;CL:0000540,8.61e-12,33;CL:0000047,8.61e-12,33;CL:0000031,8.61e-12,33;CL:0000404,8.61e-12,33;CL:0000393,8.43e-10,39;CL:0000211,8.43e-10,39;CL:0002319,8.84e-09,43;CL:0000221,1.49e-08,44;CL:0000133,1.49e-08,44;CL:0002614,9.44e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.68e-17!102;UBERON:0000924!5.68e-17!102;UBERON:0006601!5.68e-17!102;UBERON:0001017!2.64e-16!73;UBERON:0005743!2.64e-16!73;UBERON:0000073!4.80e-16!75;UBERON:0001016!4.80e-16!75;UBERON:0002346!4.97e-16!71;UBERON:0003075!4.97e-16!71;UBERON:0007284!4.97e-16!71;UBERON:0002020!7.70e-15!34;UBERON:0002791!6.48e-14!29;UBERON:0003528!6.48e-14!29;UBERON:0001893!6.48e-14!29;UBERON:0001049!1.70e-12!52;UBERON:0005068!1.70e-12!52;UBERON:0006241!1.70e-12!52;UBERON:0007135!1.70e-12!52;UBERON:0000955!1.88e-12!50;UBERON:0006238!1.88e-12!50;UBERON:0002780!2.06e-12!39;UBERON:0001890!2.06e-12!39;UBERON:0006240!2.06e-12!39;UBERON:0002616!5.06e-12!49;UBERON:0000033!7.51e-12!63;UBERON:0003080!7.99e-12!40;UBERON:0003056!4.10e-10!49;UBERON:0000956!8.29e-10!21;UBERON:0001869!8.29e-10!21;UBERON:0000203!8.29e-10!21;UBERON:0002021!6.99e-07!10;UBERON:0000411!6.99e-07!10;UBERON:0001950!6.99e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,3.03e-24,29;UBERON:0002791,3.03e-24,29;UBERON:0001893,3.03e-24,29;UBERON:0002020,3.26e-24,34;UBERON:0001049,7.26e-21,52;UBERON:0005068,7.26e-21,52;UBERON:0006241,7.26e-21,52;UBERON:0007135,7.26e-21,52;UBERON:0002616,1.49e-20,46;UBERON:0000955,4.47e-20,47;UBERON:0006238,4.47e-20,47;UBERON:0000073,5.08e-20,54;UBERON:0002780,1.28e-17,39;UBERON:0001890,1.28e-17,39;UBERON:0006240,1.28e-17,39;UBERON:0003080,3.89e-17,40;UBERON:0002346,1.39e-16,64;UBERON:0003075,1.39e-16,64;UBERON:0007284,1.39e-16,64;UBERON:0001017,2.17e-16,73;UBERON:0001016,6.73e-16,75;UBERON:0000956,3.80e-15,21;UBERON:0001869,3.80e-15,21;UBERON:0000203,3.80e-15,21;UBERON:0010371,2.73e-14,73;UBERON:0003056,1.10e-13,49;UBERON:0004121,4.15e-12,95;UBERON:0000924,4.15e-12,95;UBERON:0006601,4.15e-12,95;UBERON:0010314,6.54e-11,92;UBERON:0002420,1.56e-10,8;UBERON:0007245,1.56e-10,8;UBERON:0010009,1.56e-10,8;UBERON:0010011,1.56e-10,8;UBERON:0000454,1.56e-10,8;UBERON:0000025,9.00e-10,114;UBERON:0004111,5.51e-09,122;UBERON:0002038,9.44e-08,3;UBERON:0009663,9.44e-08,3;UBERON:0009661,9.44e-08,3;UBERON:0000125,9.44e-08,3;UBERON:0002308,9.44e-08,3;UBERON:0002619,2.10e-07,17 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0.286533439938757,0,0.404632921719196,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,5.18448061542388,2.56511282830212,3.57552434297349,0,0.220868540951614,1.34739879136449,0.287536413054709,0,0,0.383062014255563,0.153606533256243,1.71452174049252,0.731901148819277,0,0.279182999001381,1.12552522006336,1.83357897332172,0.294628585473668,0.142371680799103,2.05039390407831,0.151452386666368,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0.505524445014783,0,0,0.593768556259299,0.173485326766136,0.608930956624282,0.461230994512117,0.753613202763113,0.352766121407114,0.251333182659351,0,0,0,0,0,0,0,2.63502717310392,4.39838084308256,0,0,0,0,0,1.37250180845588,0.376963056338593,0.695297280769106,0.255715457330331,0.62336413367868,0.162241263067758,0.407357455401265,0,0.252722758433675,0,0,0,0,0.452114453507145,0.204109497453984,0,0.374806898238915,0,0,0.189106080167819,0,0.219195732427575,0,0,0.205782136407943,0.398068533636986,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54356918568927,0,0,0,0,0,0,0,0,0,0.164698954724011,0.754005626400808,0.198956472041151,0.19496408711912,0,0,0,0,0,0,0.203651327845314,0.193952487167626,0,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0.274561413188081,1.43768206527355,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0.44292937929755,0.159454768657487,0.163863314715738,0.172684981865896,0.289298117163023,0,0,0,0,0,0.117211686592203,0,0,0.94652465824877,0.390438744296638,0.215423397732799,0,1.11399337041197,0,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0,0.35613120733451,0.81443479676788,0,0,0.242780636154981,0.302323556964751,0.188605079755898,0,0,0,0,0,0,0,0,0,0.36012218806262,0,0,0,0.356737635204141,0.164549020602121,0,0,0,0,0,0,0.120625849856312,0.238744688006273,0,0,0,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0,0,0.324016022465404,0,0,0.134864346384821,0.165306911450672,0.26175594198403,0,0.621339313086926,0,0.149516546043979,0.165458490457098,0.194451188344048,0.129159823477731,0,0,0,0.104859344425711,0,0,0,0,0.205421914329655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0.572895513439397,1.3748254587495,0.685082519770642,1.5107877947794,0.675022500231806,0.45032120322422,1.35942722695261,0,0,0,0,0.243106717068294,0,0,0,0,0.64183841918363,0,0.25347929989024,0.188626341386076,0.37456602987953,0.128050304809739,0.229741875822453,0,0,0.77163688185482,0,0.588795680537589,0.342869252385415,0.354951612318675,0,0.290692833264657,0.376437521661322,0.338458431566706,0.548783918618318,0.526139422875686,0.135804113845862,0.561142271657738,0.118635018124174,0.0985044823755635,0.409231043169689,0.154936841185966,0.771626443924566,0.249810577937946,0,0,0.382576664137687,0,0 | |||
|short_description=p@chr4:34016561..34016565,+ | |||
}} |
Revision as of 04:52, 14 September 2013
Short description: | p@chr4:34016561..34016565, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:34016561..34016565, + |
Coexpression cluster: | MCL_coexpression_mm9:923 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 1.18e-14 | 6 |
CNS neuron (sensu Vertebrata) | 6.80e-14 | 23 |
neuroblast (sensu Vertebrata) | 6.80e-14 | 23 |
neuron | 8.61e-12 | 33 |
neuronal stem cell | 8.61e-12 | 33 |
neuroblast | 8.61e-12 | 33 |
electrically signaling cell | 8.61e-12 | 33 |
electrically responsive cell | 8.43e-10 | 39 |
electrically active cell | 8.43e-10 | 39 |
neural cell | 8.84e-09 | 43 |
ectodermal cell | 1.49e-08 | 44 |
neurectodermal cell | 1.49e-08 | 44 |
neuron of the substantia nigra | 9.44e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.