FFCP PHASE1:Mm9::chr6:149357401..149357412,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12121|HGNC=|MCL_coexpression_id=826|UniProt=B2KG45,Q5DTM3,B2KG44,Q8BR07|association_with_transcript=0bp_to_NM_001112796,NM_009753,uc009euf.1,uc009eug.2,uc009euh.2,uc009eui.2_5end|description=CAGE_peak_3_at_Bicd1_5end|id=chr6:149357401..149357412,+|ontology_enrichment_celltype=CL:0000540!8.01e-10!33;CL:0000047!8.01e-10!33;CL:0000031!8.01e-10!33;CL:0000404!8.01e-10!33;CL:0000393!3.07e-08!39;CL:0000211!3.07e-08!39;CL:0000221!7.82e-08!44;CL:0000133!7.82e-08!44;CL:0002319!2.62e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,3.69e-15,33;CL:0000047,3.69e-15,33;CL:0000031,3.69e-15,33;CL:0000404,3.69e-15,33;CL:0000393,1.42e-13,39;CL:0000211,1.42e-13,39;CL:0000221,5.92e-13,44;CL:0000133,5.92e-13,44;CL:0000107,9.85e-13,9;CL:0002319,9.13e-12,43;CL:0002321,4.91e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.19e-19!75;UBERON:0001016!3.19e-19!75;UBERON:0001017!2.35e-18!73;UBERON:0005743!2.35e-18!73;UBERON:0004121!1.03e-17!102;UBERON:0000924!1.03e-17!102;UBERON:0006601!1.03e-17!102;UBERON:0002346!2.04e-15!71;UBERON:0003075!2.04e-15!71;UBERON:0007284!2.04e-15!71;UBERON:0000033!5.37e-15!63;UBERON:0001049!2.56e-12!52;UBERON:0005068!2.56e-12!52;UBERON:0006241!2.56e-12!52;UBERON:0007135!2.56e-12!52;UBERON:0000955!1.09e-11!50;UBERON:0006238!1.09e-11!50;UBERON:0003056!2.19e-11!49;UBERON:0002616!3.55e-11!49;UBERON:0002020!9.04e-09!34;UBERON:0003080!1.33e-08!40;UBERON:0002780!4.64e-08!39;UBERON:0001890!4.64e-08!39;UBERON:0006240!4.64e-08!39;UBERON:0000010!4.20e-07!11;UBERON:0007811!5.30e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.51e-30,75;UBERON:0001017,6.91e-30,73;UBERON:0004121,2.42e-28,95;UBERON:0000924,2.42e-28,95;UBERON:0006601,2.42e-28,95;UBERON:0002346,1.89e-18,64;UBERON:0003075,1.89e-18,64;UBERON:0007284,1.89e-18,64;UBERON:0000073,3.96e-18,54;UBERON:0010371,6.16e-18,73;UBERON:0001049,1.16e-15,52;UBERON:0005068,1.16e-15,52;UBERON:0006241,1.16e-15,52;UBERON:0007135,1.16e-15,52;UBERON:0010314,1.33e-13,92;UBERON:0002410,9.85e-13,9;UBERON:0000010,1.53e-12,11;UBERON:0000955,3.99e-12,47;UBERON:0006238,3.99e-12,47;UBERON:0002616,3.74e-11,46;UBERON:0003076,7.53e-11,12;UBERON:0003057,7.53e-11,12;UBERON:0002020,7.54e-11,34;UBERON:0003056,1.22e-08,49;UBERON:0003080,8.48e-08,40;UBERON:0003528,1.79e-07,29;UBERON:0002791,1.79e-07,29;UBERON:0001893,1.79e-07,29;UBERON:0002780,7.11e-07,39;UBERON:0001890,7.11e-07,39;UBERON:0006240,7.11e-07,39;UBERON:0002240,7.31e-07,6;UBERON:0005174,7.31e-07,6;UBERON:0001137,7.31e-07,6|phase1_expression=1.12104192973356,0,0,0,0,0,0,0.258246646883153,0,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0.137114433605739,0,0.765389611359628,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.183546752161682,0,0,0,0.777719596297134,0,0,0.335565212115473,0,0.336093799142464,0,0,1.54701627683233,0.606949382578793,2.11596391708813,0,0,0,0,0,0,0,0.384218305321555,0.725827286159344,0.135005938331691,0.210324961351382,1.14260393761521,0.662605622854841,0.244981598429908,0.191690942036473,0,2.20231761998777,2.29837208553338,1.53606533256243,0.659431438650969,0.640413505216868,1.04182674111352,0.558365998002762,0,1.22238598221448,2.06240009831567,1.99320353118744,1.1183966749518,0.605809546665472,1.28471652181535,0.289864488701678,0,0,0,0,0,0,0,0.519572009205738,0,2.95771181531029,0,0,0,0,0,0,0.34255163915718,0,0.593768556259299,0,0,0.230615497256059,0.301445281105245,0.352766121407114,0.125666591329675,0.247194967734374,0.722996784599558,0,0.161766849947409,0,0,0,3.51336956413857,3.97948742945565,0.255457055208591,0,0,0,2.39665023047716,3.66000482254901,2.01046963380583,1.21677024134594,1.02286182932132,2.70124457927428,1.62241263067758,0.916554274652847,0.248813941220186,0,0.210441855886474,0.520481771850815,0.689706313300419,0.540186389416048,0.60281927134286,1.56483948048054,0.768682321709099,1.40552586839593,2.06962696591213,0.215567992932842,0,0.351902248327898,0,0,0,0.205782136407943,0,0,0.257347907114715,0,0.207125772535502,0.234526059981096,0.180062061461015,0,0.196764231747404,0.462801338662135,0,0.268273401399619,0.350296027101508,0.16455984991348,0.32833492815819,0.486412857275134,0.584799949701329,0,0.134206418760372,1.26173969138476,2.77842453424068,0,0.528901133327089,0.426576501070468,0.696710015581316,0.38660238396628,0.201683524623343,0.444756087689741,0.570676878337677,0,0.329397909448022,0.251335208800269,0.198956472041151,0,0,0,0,0.379335801906163,0.456994050438915,0,0.203651327845314,0,0.210407459670956,0.569128834118316,0.442830443938806,0.470996183524124,0.370191491765402,0,0.166845105716094,0,0,0,0,0,0.287696137450811,0.324270453550071,0.274561413188081,0,0,0,0,0,0,0.184753190166605,0.37898282354097,0,0.678980343100753,0.704070744865506,0.167506257441816,0.238043640886014,0,0.157635144106191,0,0,0,0.172684981865896,0,1.50791283939272,0,0,0,1.76605648986571,1.87538698547525,0,0,3.47059041357882,0.390438744296638,2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| ||
|EntrezGene=12121 | |||
|HGNC= | |||
|MCL_coexpression_id=826 | |||
|UniProt=B2KG45,Q5DTM3,B2KG44,Q8BR07 | |||
|association_with_transcript=0bp_to_NM_001112796,NM_009753,uc009euf.1,uc009eug.2,uc009euh.2,uc009eui.2_5end | |||
|description=CAGE_peak_3_at_Bicd1_5end | |||
|id=chr6:149357401..149357412,+ | |||
|ontology_enrichment_celltype=CL:0000540!8.01e-10!33;CL:0000047!8.01e-10!33;CL:0000031!8.01e-10!33;CL:0000404!8.01e-10!33;CL:0000393!3.07e-08!39;CL:0000211!3.07e-08!39;CL:0000221!7.82e-08!44;CL:0000133!7.82e-08!44;CL:0002319!2.62e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.69e-15,33;CL:0000047,3.69e-15,33;CL:0000031,3.69e-15,33;CL:0000404,3.69e-15,33;CL:0000393,1.42e-13,39;CL:0000211,1.42e-13,39;CL:0000221,5.92e-13,44;CL:0000133,5.92e-13,44;CL:0000107,9.85e-13,9;CL:0002319,9.13e-12,43;CL:0002321,4.91e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.19e-19!75;UBERON:0001016!3.19e-19!75;UBERON:0001017!2.35e-18!73;UBERON:0005743!2.35e-18!73;UBERON:0004121!1.03e-17!102;UBERON:0000924!1.03e-17!102;UBERON:0006601!1.03e-17!102;UBERON:0002346!2.04e-15!71;UBERON:0003075!2.04e-15!71;UBERON:0007284!2.04e-15!71;UBERON:0000033!5.37e-15!63;UBERON:0001049!2.56e-12!52;UBERON:0005068!2.56e-12!52;UBERON:0006241!2.56e-12!52;UBERON:0007135!2.56e-12!52;UBERON:0000955!1.09e-11!50;UBERON:0006238!1.09e-11!50;UBERON:0003056!2.19e-11!49;UBERON:0002616!3.55e-11!49;UBERON:0002020!9.04e-09!34;UBERON:0003080!1.33e-08!40;UBERON:0002780!4.64e-08!39;UBERON:0001890!4.64e-08!39;UBERON:0006240!4.64e-08!39;UBERON:0000010!4.20e-07!11;UBERON:0007811!5.30e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.51e-30,75;UBERON:0001017,6.91e-30,73;UBERON:0004121,2.42e-28,95;UBERON:0000924,2.42e-28,95;UBERON:0006601,2.42e-28,95;UBERON:0002346,1.89e-18,64;UBERON:0003075,1.89e-18,64;UBERON:0007284,1.89e-18,64;UBERON:0000073,3.96e-18,54;UBERON:0010371,6.16e-18,73;UBERON:0001049,1.16e-15,52;UBERON:0005068,1.16e-15,52;UBERON:0006241,1.16e-15,52;UBERON:0007135,1.16e-15,52;UBERON:0010314,1.33e-13,92;UBERON:0002410,9.85e-13,9;UBERON:0000010,1.53e-12,11;UBERON:0000955,3.99e-12,47;UBERON:0006238,3.99e-12,47;UBERON:0002616,3.74e-11,46;UBERON:0003076,7.53e-11,12;UBERON:0003057,7.53e-11,12;UBERON:0002020,7.54e-11,34;UBERON:0003056,1.22e-08,49;UBERON:0003080,8.48e-08,40;UBERON:0003528,1.79e-07,29;UBERON:0002791,1.79e-07,29;UBERON:0001893,1.79e-07,29;UBERON:0002780,7.11e-07,39;UBERON:0001890,7.11e-07,39;UBERON:0006240,7.11e-07,39;UBERON:0002240,7.31e-07,6;UBERON:0005174,7.31e-07,6;UBERON:0001137,7.31e-07,6 | |||
|phase1_expression=1.12104192973356,0,0,0,0,0,0,0.258246646883153,0,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0.137114433605739,0,0.765389611359628,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.183546752161682,0,0,0,0.777719596297134,0,0,0.335565212115473,0,0.336093799142464,0,0,1.54701627683233,0.606949382578793,2.11596391708813,0,0,0,0,0,0,0,0.384218305321555,0.725827286159344,0.135005938331691,0.210324961351382,1.14260393761521,0.662605622854841,0.244981598429908,0.191690942036473,0,2.20231761998777,2.29837208553338,1.53606533256243,0.659431438650969,0.640413505216868,1.04182674111352,0.558365998002762,0,1.22238598221448,2.06240009831567,1.99320353118744,1.1183966749518,0.605809546665472,1.28471652181535,0.289864488701678,0,0,0,0,0,0,0,0.519572009205738,0,2.95771181531029,0,0,0,0,0,0,0.34255163915718,0,0.593768556259299,0,0,0.230615497256059,0.301445281105245,0.352766121407114,0.125666591329675,0.247194967734374,0.722996784599558,0,0.161766849947409,0,0,0,3.51336956413857,3.97948742945565,0.255457055208591,0,0,0,2.39665023047716,3.66000482254901,2.01046963380583,1.21677024134594,1.02286182932132,2.70124457927428,1.62241263067758,0.916554274652847,0.248813941220186,0,0.210441855886474,0.520481771850815,0.689706313300419,0.540186389416048,0.60281927134286,1.56483948048054,0.768682321709099,1.40552586839593,2.06962696591213,0.215567992932842,0,0.351902248327898,0,0,0,0.205782136407943,0,0,0.257347907114715,0,0.207125772535502,0.234526059981096,0.180062061461015,0,0.196764231747404,0.462801338662135,0,0.268273401399619,0.350296027101508,0.16455984991348,0.32833492815819,0.486412857275134,0.584799949701329,0,0.134206418760372,1.26173969138476,2.77842453424068,0,0.528901133327089,0.426576501070468,0.696710015581316,0.38660238396628,0.201683524623343,0.444756087689741,0.570676878337677,0,0.329397909448022,0.251335208800269,0.198956472041151,0,0,0,0,0.379335801906163,0.456994050438915,0,0.203651327845314,0,0.210407459670956,0.569128834118316,0.442830443938806,0.470996183524124,0.370191491765402,0,0.166845105716094,0,0,0,0,0,0.287696137450811,0.324270453550071,0.274561413188081,0,0,0,0,0,0,0.184753190166605,0.37898282354097,0,0.678980343100753,0.704070744865506,0.167506257441816,0.238043640886014,0,0.157635144106191,0,0,0,0.172684981865896,0,1.50791283939272,0,0,0,1.76605648986571,1.87538698547525,0,0,3.47059041357882,0.390438744296638,2.15423397732799,1.19484398976276,1.78238939265915,2.54768877709949,1.61924280669958,2.92255857911312,2.37172666767914,1.60660658210904,1.41940085208269,0.35613120733451,1.62886959353576,0.659880491890142,0,0.485561272309963,0,0,0,0.307435147943927,0.258428293168221,0,0.712994756769443,0.316036757935816,0,0,0.340439605753788,0.18006109403131,0.258717367565509,0.214337035031592,0.532020700926821,0.535106452806212,0.658196082408484,0.304464949114599,0,0.21183207086382,0,0.32977250588296,0,0,0,0,0.582961673259701,1.48340241608408,0,0.206386867963223,0,0,0,0,0.169978429993855,0.139951452323658,0.414599921413271,0,0.790839983952838,0,0.432021363287205,0.418176592028937,0.218362563746178,0.404593039154462,0.247960367176008,0,0.129614973291793,0,0,0.149516546043979,0.165458490457098,0.583353565032143,0.129159823477731,0.506868376472335,0.234714477291508,0.2604087696879,0.629156066554265,0.724752362478018,0.576060012515731,0.316011120628178,0,0.205421914329655,0,0,0.198681354781265,0,0.295379054349154,0.201932899896295,0.0762068066549998,0,0,0,0,0.226730383615211,0,0,0,0.386379188064381,0,0.183151624267265,0.214368379079066,1.00314420807073,4.51801474093653,1.38097570952153,1.14579102687879,1.3748254587495,2.05524755931193,0.755393897389701,0,2.2516060161211,0.906284817968409,0.51776031175182,0.207574695168353,0,0.512200817262403,0.243106717068294,0.209613162627982,0.183843508450014,0.44449345560323,0.824140228955577,0.320919209591815,0.252697211763798,0.760437899670719,0.377252682772152,0.561849044819294,0.384150914429216,0.287177344778066,0.952587382566147,0.347652977834566,1.54327376370964,0.412085900803307,0.294397840268795,0.685738504770831,0.177475806159338,0.238436189947321,0.145346416632329,0.752875043322645,0.592302255241736,0.182927972872773,0,0.135804113845862,0.561142271657738,0.355905054372522,0.788035859004508,0.818462086339379,0.309873682371932,0.385813221962283,0.749431733813838,0.701794825336225,1.07435527024149,0.191288332068843,0.220591419119515,0.463735671240843 | |||
|short_description=p3@Bicd1 | |||
}} |
Revision as of 09:26, 14 September 2013
Short description: | p3@Bicd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Bicd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:826 |
Association with transcript: | 0bp_to_NM_001112796, NM_009753, uc009euf.1, uc009eug.2, uc009euh.2, uc009eui.2_5end |
EntrezGene: | Bicd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.69e-15 | 33 |
neuronal stem cell | 3.69e-15 | 33 |
neuroblast | 3.69e-15 | 33 |
electrically signaling cell | 3.69e-15 | 33 |
electrically responsive cell | 1.42e-13 | 39 |
electrically active cell | 1.42e-13 | 39 |
ectodermal cell | 5.92e-13 | 44 |
neurectodermal cell | 5.92e-13 | 44 |
autonomic neuron | 9.85e-13 | 9 |
neural cell | 9.13e-12 | 43 |
embryonic cell | 4.91e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.51e-30 | 75 |
central nervous system | 6.91e-30 | 73 |
ectoderm-derived structure | 2.42e-28 | 95 |
ectoderm | 2.42e-28 | 95 |
presumptive ectoderm | 2.42e-28 | 95 |
neurectoderm | 1.89e-18 | 64 |
neural plate | 1.89e-18 | 64 |
presumptive neural plate | 1.89e-18 | 64 |
regional part of nervous system | 3.96e-18 | 54 |
ecto-epithelium | 6.16e-18 | 73 |
neural tube | 1.16e-15 | 52 |
neural rod | 1.16e-15 | 52 |
future spinal cord | 1.16e-15 | 52 |
neural keel | 1.16e-15 | 52 |
structure with developmental contribution from neural crest | 1.33e-13 | 92 |
autonomic nervous system | 9.85e-13 | 9 |
peripheral nervous system | 1.53e-12 | 11 |
brain | 3.99e-12 | 47 |
future brain | 3.99e-12 | 47 |
regional part of brain | 3.74e-11 | 46 |
posterior neural tube | 7.53e-11 | 12 |
chordal neural plate | 7.53e-11 | 12 |
gray matter | 7.54e-11 | 34 |
pre-chordal neural plate | 1.22e-08 | 49 |
anterior neural tube | 8.48e-08 | 40 |
brain grey matter | 1.79e-07 | 29 |
regional part of telencephalon | 1.79e-07 | 29 |
telencephalon | 1.79e-07 | 29 |
regional part of forebrain | 7.11e-07 | 39 |
forebrain | 7.11e-07 | 39 |
future forebrain | 7.11e-07 | 39 |
spinal cord | 7.31e-07 | 6 |
dorsal region element | 7.31e-07 | 6 |
dorsum | 7.31e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.