FFCP PHASE1:Mm9::chr17:8994505..8994547,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=23984|HGNC=|MCL_coexpression_id=459|UniProt=|association_with_transcript=-10bp_to_ENSMUST00000141877_5end|description=CAGE_peak_2_at_Pde10a_5end|id=chr17:8994505..8994547,+|ontology_enrichment_celltype=CL:0000117!2.25e-13!23;CL:0000337!2.25e-13!23;CL:0000393!7.26e-12!39;CL:0000211!7.26e-12!39;CL:0000055!1.53e-11!50;CL:0000540!3.21e-09!33;CL:0000047!3.21e-09!33;CL:0000031!3.21e-09!33;CL:0000404!3.21e-09!33;CL:0002319!1.07e-08!43;CL:0000221!1.77e-08!44;CL:0000133!1.77e-08!44|ontology_enrichment_celltype_v019_2=CL:0000117,4.59e-17,23;CL:0000337,4.59e-17,23;CL:0000393,8.50e-14,39;CL:0000211,8.50e-14,39;CL:0000540,2.02e-10,33;CL:0000047,2.02e-10,33;CL:0000031,2.02e-10,33;CL:0000404,2.02e-10,33;CL:0002319,7.42e-08,43;CL:0000221,1.83e-07,44;CL:0000133,1.83e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!5.53e-12!71;UBERON:0003075!5.53e-12!71;UBERON:0007284!5.53e-12!71;UBERON:0004121!6.89e-12!102;UBERON:0000924!6.89e-12!102;UBERON:0006601!6.89e-12!102;UBERON:0000073!7.93e-10!75;UBERON:0001016!7.93e-10!75;UBERON:0003056!9.40e-10!49;UBERON:0001017!1.03e-09!73;UBERON:0005743!1.03e-09!73;UBERON:0001049!1.27e-08!52;UBERON:0005068!1.27e-08!52;UBERON:0006241!1.27e-08!52;UBERON:0007135!1.27e-08!52;UBERON:0000033!1.69e-08!63;UBERON:0002020!2.03e-08!34;UBERON:0002616!2.66e-07!49;UBERON:0000468!2.81e-07!333;UBERON:0000955!3.01e-07!50;UBERON:0006238!3.01e-07!50;UBERON:0002780!3.33e-07!39;UBERON:0001890!3.33e-07!39;UBERON:0006240!3.33e-07!39;UBERON:0003080!5.00e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.79e-10,64;UBERON:0003075,4.79e-10,64;UBERON:0007284,4.79e-10,64;UBERON:0003056,4.35e-09,49;UBERON:0002020,5.08e-09,34;UBERON:0000073,1.09e-08,54;UBERON:0004121,3.76e-08,95;UBERON:0000924,3.76e-08,95;UBERON:0006601,3.76e-08,95;UBERON:0001017,7.16e-08,73;UBERON:0001049,8.25e-08,52;UBERON:0005068,8.25e-08,52;UBERON:0006241,8.25e-08,52;UBERON:0007135,8.25e-08,52;UBERON:0010371,1.16e-07,73;UBERON:0010314,1.26e-07,92;UBERON:0001016,2.59e-07,75;UBERON:0002420,3.04e-07,8;UBERON:0007245,3.04e-07,8;UBERON:0010009,3.04e-07,8;UBERON:0010011,3.04e-07,8;UBERON:0000454,3.04e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,1.10556277196391,0,0,0.159992422793407,0,0,0,0,0,0,0,1.90509202037889,1.23012957516914,0,0,0,0,0,0,0,0,0,0,2.89562681343828,3.34543873024398,3.85448179539531,0,1.09012578190223,0.439372365468944,0.972149495371417,0.55994568650145,1.43752564364972,0,0,0,2.82985379639542,2.86533439938757,1.54701627683233,6.47412674750713,4.23192783417626,8.87363964908651,0.677689064138264,0,0,0,0,0.599200221036809,2.30530983192933,7.67303131082735,4.72520784160917,5.8890989178387,2.28520787523043,1.98781686856452,6.85948475603743,5.65488279007595,4.5960939330501,1.10115880999389,3.06449611404451,1.99688493233117,10.1552441552249,10.1551284398675,7.8137005583514,1.67509799400829,3.37657566019008,1.68078072554491,5.59794312399969,4.55589378557129,4.28718725398191,0.757261933331841,0.982430281388212,2.89864488701678,1.72084775396277,0,0,0,0,0.561777680527007,0,0,0,0.422530259330042,0,0,0,0,0.253359865475099,0,0.22836775943812,0.258937883647172,1.48442139064825,0.520455980298408,0.304465478312141,0.691846491768175,0.753613202763113,1.29347577849275,1.50799909595611,4.44950941921873,0.722996784599558,0,1.13236794963186,0.220841518460394,0.484875253135222,0,0.585561594023094,0.209446706813455,0.255457055208591,0,0,0,0.449371918214468,17.8425235099264,19.2251158732683,2.9550134432687,3.58001640262463,3.94797284663164,10.2211995732687,0.916554274652847,0.622034853050465,0,0.631325567659422,1.43132487258974,3.90833577536904,3.60124259610698,5.57607825992146,7.75616090325138,5.76511741281824,4.68508622798644,0.258703370739016,1.07783996466421,0.756424320671277,0.703804496655795,0.876782929710299,0.278047249225598,1.0447564995665,1.23469281844766,1.59227413454795,0,0.257347907114715,0,0.621377317606506,0.234526059981096,0.180062061461015,0.23674473558521,0,0.462801338662135,0.697601834251224,0.536546802799238,0.583826711835847,0.658239399653922,1.47750717671186,1.54030738137126,1.60819986167866,0.439100230582101,1.07365135008297,2.94405927989778,4.73361216944708,0,0,0.426576501070468,0.464473343720877,0.644337306610467,0.605050573870028,0.667134131534611,0,0.949058123089023,0.329397909448022,0.251335208800269,0,0.58489226135736,0,0,0,0.189667900953082,0.913988100877831,0,1.62921062276251,1.16371492300575,1.05203729835478,1.39120381673366,0.442830443938806,0.627994911365499,0,0,0.166845105716094,0,0.224862112384854,0,0,0,0,0.162135226775035,0.274561413188081,0,0,0,0,0.179397413521912,0,0,1.70542270593436,1.14075483509418,1.69745085775188,0.704070744865506,0.837531287209079,0.714130922658041,0.195133647857799,0.788175720530955,0.44292937929755,1.2756381492599,0.163863314715738,0.345369963731791,0,0,0,0,0.275936746304732,1.44495530989013,0.937693492737625,0.491804836130026,1.00988370881749,0.94652465824877,0.780877488593277,1.0771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| ||
|EntrezGene=23984 | |||
|HGNC= | |||
|MCL_coexpression_id=459 | |||
|UniProt= | |||
|association_with_transcript=-10bp_to_ENSMUST00000141877_5end | |||
|description=CAGE_peak_2_at_Pde10a_5end | |||
|id=chr17:8994505..8994547,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.25e-13!23;CL:0000337!2.25e-13!23;CL:0000393!7.26e-12!39;CL:0000211!7.26e-12!39;CL:0000055!1.53e-11!50;CL:0000540!3.21e-09!33;CL:0000047!3.21e-09!33;CL:0000031!3.21e-09!33;CL:0000404!3.21e-09!33;CL:0002319!1.07e-08!43;CL:0000221!1.77e-08!44;CL:0000133!1.77e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.59e-17,23;CL:0000337,4.59e-17,23;CL:0000393,8.50e-14,39;CL:0000211,8.50e-14,39;CL:0000540,2.02e-10,33;CL:0000047,2.02e-10,33;CL:0000031,2.02e-10,33;CL:0000404,2.02e-10,33;CL:0002319,7.42e-08,43;CL:0000221,1.83e-07,44;CL:0000133,1.83e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!5.53e-12!71;UBERON:0003075!5.53e-12!71;UBERON:0007284!5.53e-12!71;UBERON:0004121!6.89e-12!102;UBERON:0000924!6.89e-12!102;UBERON:0006601!6.89e-12!102;UBERON:0000073!7.93e-10!75;UBERON:0001016!7.93e-10!75;UBERON:0003056!9.40e-10!49;UBERON:0001017!1.03e-09!73;UBERON:0005743!1.03e-09!73;UBERON:0001049!1.27e-08!52;UBERON:0005068!1.27e-08!52;UBERON:0006241!1.27e-08!52;UBERON:0007135!1.27e-08!52;UBERON:0000033!1.69e-08!63;UBERON:0002020!2.03e-08!34;UBERON:0002616!2.66e-07!49;UBERON:0000468!2.81e-07!333;UBERON:0000955!3.01e-07!50;UBERON:0006238!3.01e-07!50;UBERON:0002780!3.33e-07!39;UBERON:0001890!3.33e-07!39;UBERON:0006240!3.33e-07!39;UBERON:0003080!5.00e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.79e-10,64;UBERON:0003075,4.79e-10,64;UBERON:0007284,4.79e-10,64;UBERON:0003056,4.35e-09,49;UBERON:0002020,5.08e-09,34;UBERON:0000073,1.09e-08,54;UBERON:0004121,3.76e-08,95;UBERON:0000924,3.76e-08,95;UBERON:0006601,3.76e-08,95;UBERON:0001017,7.16e-08,73;UBERON:0001049,8.25e-08,52;UBERON:0005068,8.25e-08,52;UBERON:0006241,8.25e-08,52;UBERON:0007135,8.25e-08,52;UBERON:0010371,1.16e-07,73;UBERON:0010314,1.26e-07,92;UBERON:0001016,2.59e-07,75;UBERON:0002420,3.04e-07,8;UBERON:0007245,3.04e-07,8;UBERON:0010009,3.04e-07,8;UBERON:0010011,3.04e-07,8;UBERON:0000454,3.04e-07,8 | |||
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| |||
|short_description=p2@Pde10a | |||
}} |
Revision as of 15:37, 13 September 2013
Short description: | p2@Pde10a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pde10a_5end |
Coexpression cluster: | MCL_coexpression_mm9:459 |
Association with transcript: | -10bp_to_ENSMUST00000141877_5end |
EntrezGene: | Pde10a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.59e-17 | 23 |
neuroblast (sensu Vertebrata) | 4.59e-17 | 23 |
electrically responsive cell | 8.50e-14 | 39 |
electrically active cell | 8.50e-14 | 39 |
neuron | 2.02e-10 | 33 |
neuronal stem cell | 2.02e-10 | 33 |
neuroblast | 2.02e-10 | 33 |
electrically signaling cell | 2.02e-10 | 33 |
neural cell | 7.42e-08 | 43 |
ectodermal cell | 1.83e-07 | 44 |
neurectodermal cell | 1.83e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 4.79e-10 | 64 |
neural plate | 4.79e-10 | 64 |
presumptive neural plate | 4.79e-10 | 64 |
pre-chordal neural plate | 4.35e-09 | 49 |
gray matter | 5.08e-09 | 34 |
regional part of nervous system | 1.09e-08 | 54 |
ectoderm-derived structure | 3.76e-08 | 95 |
ectoderm | 3.76e-08 | 95 |
presumptive ectoderm | 3.76e-08 | 95 |
central nervous system | 7.16e-08 | 73 |
neural tube | 8.25e-08 | 52 |
neural rod | 8.25e-08 | 52 |
future spinal cord | 8.25e-08 | 52 |
neural keel | 8.25e-08 | 52 |
ecto-epithelium | 1.16e-07 | 73 |
structure with developmental contribution from neural crest | 1.26e-07 | 92 |
nervous system | 2.59e-07 | 75 |
basal ganglion | 3.04e-07 | 8 |
nuclear complex of neuraxis | 3.04e-07 | 8 |
aggregate regional part of brain | 3.04e-07 | 8 |
collection of basal ganglia | 3.04e-07 | 8 |
cerebral subcortex | 3.04e-07 | 8 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.