FFCP PHASE1:Mm9::chr8:13287814..13287856,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=102323|HGNC=|MCL_coexpression_id=311|UniProt=Q8BZJ7,G5E8Q5,G5E8Q6,Q3TSY8|association_with_transcript=269bp_to_ENSMUST00000045366,ENSMUST00000110838,ENSMUST00000110839,ENSMUST00000110840,NM_001024504,NM_001042649,NM_001042650,NM_001042651,uc009kxg.1,uc009kxh.1,uc009kxi.1,uc009kxj.1,uc009kxk.1,uc009kxl.1,uc012fzx.1_5end|description=CAGE_peak_1_at_Dcun1d2_5end|id=chr8:13287814..13287856,-|ontology_enrichment_celltype=CL:0000117!1.60e-08!23;CL:0000337!1.60e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.60e-08,23;CL:0000337,1.60e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!6.01e-16!63;UBERON:0000955!6.35e-15!50;UBERON:0006238!6.35e-15!50;UBERON:0000153!1.05e-14!94;UBERON:0001049!1.31e-14!52;UBERON:0005068!1.31e-14!52;UBERON:0006241!1.31e-14!52;UBERON:0007135!1.31e-14!52;UBERON:0002616!2.37e-14!49;UBERON:0007811!3.57e-14!86;UBERON:0002020!2.65e-13!34;UBERON:0002346!2.89e-13!71;UBERON:0003075!2.89e-13!71;UBERON:0007284!2.89e-13!71;UBERON:0001017!1.97e-12!73;UBERON:0005743!1.97e-12!73;UBERON:0003056!3.55e-12!49;UBERON:0002791!4.35e-12!29;UBERON:0003528!4.35e-12!29;UBERON:0001893!4.35e-12!29;UBERON:0000073!7.50e-12!75;UBERON:0001016!7.50e-12!75;UBERON:0004121!2.02e-11!102;UBERON:0000924!2.02e-11!102;UBERON:0006601!2.02e-11!102;UBERON:0003080!2.16e-11!40;UBERON:0002780!7.71e-11!39;UBERON:0001890!7.71e-11!39;UBERON:0006240!7.71e-11!39;UBERON:0004111!4.81e-10!122;UBERON:0000025!1.84e-09!114;UBERON:0000956!1.51e-08!21;UBERON:0001869!1.51e-08!21;UBERON:0000203!1.51e-08!21;UBERON:0000477!4.81e-08!154;UBERON:0002619!9.50e-08!17;UBERON:0000468!3.48e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.20e-16,92;UBERON:0000073,9.75e-16,54;UBERON:0001049,1.31e-14,52;UBERON:0005068,1.31e-14,52;UBERON:0006241,1.31e-14,52;UBERON:0007135,1.31e-14,52;UBERON:0002346,2.48e-14,64;UBERON:0003075,2.48e-14,64;UBERON:0007284,2.48e-14,64;UBERON:0002020,2.65e-13,34;UBERON:0000955,3.15e-13,47;UBERON:0006238,3.15e-13,47;UBERON:0002616,1.13e-12,46;UBERON:0001017,1.97e-12,73;UBERON:0003056,3.55e-12,49;UBERON:0003528,4.35e-12,29;UBERON:0002791,4.35e-12,29;UBERON:0001893,4.35e-12,29;UBERON:0010371,4.43e-12,73;UBERON:0004121,5.93e-12,95;UBERON:0000924,5.93e-12,95;UBERON:0006601,5.93e-12,95;UBERON:0001016,7.50e-12,75;UBERON:0003080,2.16e-11,40;UBERON:0002780,7.71e-11,39;UBERON:0001890,7.71e-11,39;UBERON:0006240,7.71e-11,39;UBERON:0004111,4.81e-10,122;UBERON:0000025,1.84e-09,114;UBERON:0000956,1.51e-08,21;UBERON:0001869,1.51e-08,21;UBERON:0000203,1.51e-08,21;UBERON:0002619,9.50e-08,17|phase1_expression=8.64803774365887,3.48975407639361,2.27499619694768,5.74682001482977,2.00358291978539,5.03637815735669,3.50418960893289,10.8463591690924,8.869689495555,7.2560003159818,12.1564757440109,10.9287857823611,15.4080656938085,10.5778686926987,6.66219523631325,6.07425802169478,5.59649502502517,6.15151222448563,9.59801035240171,4.66828616977833,11.0556277196391,8.73760370567791,9.92559198727954,5.59973479776923,3.21172993494038,0,4.30761996159075,4.95583835177545,3.6104449696711,3.2763916868791,3.32595765982957,3.17515336729816,3.07532393792285,0,2.59966457776147,4.65457007003779,4.28755648150975,2.09265815368454,3.1253413780952,2.61761871986899,2.94115744015507,3.41522742479223,5.82612423637384,4.02869817521847,4.76471576731718,4.9557623083654,1.56478268869608,10.0291571935005,7.46933021297204,14.9711022287198,7.8392396110203,5.75010257459886,5.03347818173209,11.6057942721815,11.4271891708438,3.08711323243136,6.01720223871389,5.15672092277442,12.7459370341547,10.0508286061686,12.0427966666174,5.08266798103698,1.77858959222228,4.49949858640699,3.9554654502679,8.5257613793532,4.49400165777607,3.84218305321555,10.8874092923902,12.0155285115205,10.7265730289205,9.71213346972932,13.2521124570968,13.5964787128599,13.801747826626,15.6267193723704,25.3266526298594,19.025413374693,21.1977015893616,15.4306956644327,12.6252948171325,15.6274011167028,21.217907924105,13.5063026407603,18.6413862287708,11.7851434189467,15.233769845504,14.3527573285481,9.31432177998164,5.59229544790213,6.95674772884027,12.0459342777394,2.03991400112325,6.47643829965381,10.3964226791627,7.16843019355737,21.0666630197628,4.4311883870295,2.07828803682295,3.88673531961374,6.4787973097273,3.84979432242953,2.54805239706646,7.11066703153331,6.27824018932521,7.09407623330276,5.05524445014783,7.30776830201984,10.0985774622397,12.1722554033156,7.80683970447611,7.00270600117925,7.84092690670599,7.68685466818375,7.17291113527799,12.3153259503082,6.67426412882809,13.8815382643115,9.73071607144862,14.5590164952668,14.3546986999256,12.6067565815158,7.45567044872489,29.2780797011547,25.5524982312415,6.38642638021478,4.19352935770721,5.39912457894067,3.43089613097275,22.6183865501282,20.1300265240196,14.1989417887537,22.0756886644191,18.4115129277838,24.103413168909,24.1739481970959,6.11036183101898,8.9573018839267,8.84529654517861,15.5726973355991,7.28674480591141,10.8053989083732,12.2442248267637,11.4535661555143,8.57259889306731,9.60852902136373,10.6819965998091,19.6614561761652,8.83828771024653,10.2117283290622,13.0203831881322,11.836569551089,8.34141747676794,13.2335823278423,7.40815691068596,8.35943920637671,2.1066395619397,3.60287069960601,2.55747149456033,11.1847917169171,6.0976775595085,9.54328925743379,13.9679393995274,12.9864392953287,12.4956361438776,13.4869687955237,11.8040296615832,12.7274223180215,19.0889425899637,23.4759473633106,23.9152988160274,29.9709974221931,30.517466025456,26.5728709145536,19.9775451135921,12.0398396483763,6.93879444265976,4.7601101999438,9.38468302355029,9.98617688999886,8.11865006329188,6.45387278794696,8.2279876222602,6.84812254005213,7.59246498471219,5.76446341534038,5.27803938480566,5.96869416123452,9.35827618171777,10.7858329038507,7.5648317456143,7.76650965692032,9.293727146701,8.68288695833939,10.1436962105772,10.1825663922657,8.33995694820791,6.66290288958026,10.4340286255025,11.6612016903886,9.89091985400661,9.87177311374404,10.6722945751374,6.67380422864376,7.46924181430171,7.64531182108503,7.30296436998611,6.27060615356284,6.11102044275408,6.61701116136864,3.72911021582581,5.21666685057355,2.87536413054709,4.83783231969054,8.11297950097858,8.5876818502018,9.32866550313943,9.64887042726734,11.0851914099963,5.87423376488503,7.65935389277522,6.95954851678271,6.80601720036656,12.2279567932526,12.3782693260727,10.9274842800367,8.6699329258405,7.52979944805835,10.0456504254217,12.6174752331118,15.0235934223329,10.4147322178688,9.04747703635634,4.89515115436839,7.86822836830458,11.313406598494,24.2431390881566,20.3948334670434,5.08198330667694,43.9299413335609,8.83423014365519,7.02789739733949,6.67812532971677,7.16906393857656,9.13474563737816,8.49229592366497,5.66734982344852,9.64444331107329,11.0680577825027,21.8498495166829,11.4971469018698,9.79360820169904,7.4928001302645,13.5275500837479,11.9470624505967,4.61283208694465,7.55808892411878,3.77210159511796,6.79194353625777,8.9156192903739,7.49442050187841,8.36127577798263,6.06045543254026,9.7971394960103,7.37930260024991,15.470331487228,16.3411010761818,10.2634823597847,6.98536892426874,8.3591443662321,9.04435191575595,8.38333442729732,7.24015690649332,5.48036908406279,6.8054795338476,13.1335883935569,9.2621927183084,11.7069239588451,4.68246837418126,10.072258463002,5.96861720015682,5.41664969158702,7.57850175237612,23.1781627513137,4.95525554313773,7.63631411463923,7.40778109478847,5.65105371014073,4.78429797023588,5.49067615695654,3.22959016988325,4.47844647435706,3.73139929271944,7.63736494412091,9.01557581706236,9.55601495496189,7.34436317588249,7.94535524854981,4.58561383866973,6.20375993370175,5.78574190077352,8.89970202745701,6.73997861117323,14.2908042009993,2.25477175473676,8.52244312450679,8.76929999422617,9.52810822885833,7.62042958518613,10.644235905919,6.21993364822496,10.8069639420479,13.2122773976396,9.42178071221424,6.33666013767304,12.0084225838708,7.70355818102624,7.80603274452687,6.75588279484534,10.7416017400489,8.14593554603186,9.85602686063745,12.4059202826645,10.1976114447629,9.67826444518498,10.9900541799156,9.74578807397524,12.0264802050412,8.99952146798081,21.9928472106755,6.21560669447381,4.21655126064536,6.71538465456314,11.5913756419314,5.63047426353546,9.15758121336325,9.86094543763703,8.52672576860118,13.5540442228096,14.7304075682297,18.3326564300607,10.6548973053086,23.9778881919725,24.1726047164704,18.2256075062588,25.6683085837806,24.9228324941313,21.7459330935764,6.95375228813984,4.38927360741134,9.39034831647738,11.6691224192781,7.96530017986333,6.80220981265052,9.55660929546946,8.65347240403356,9.30665707816264,8.33900798820532,10.6461305953901,12.260712190095,9.08322622457859,10.4360998419937,12.0614484806788,14.2888107384922,9.15486174964358,11.767462448286,14.4230065281157,17.9582682563965,10.2860775715625,10.8260241757196,11.2065009275241,11.1916740806893,12.234219453993,9.30760686808441,12.073246209603,8.41823076601097,10.5927208799772,14.5896990631012,12.4566769030383,10.835493061312,12.2769312950907,12.8597578184352,9.83823716003821,9.99242311751784,8.18760629558929,9.02458427002853,6.69509162240952,15.6619907574856,15.3032771509478|short_description=p1@Dcun1d2}} | ||
|EntrezGene=102323 | |||
|HGNC= | |||
|MCL_coexpression_id=311 | |||
|UniProt=Q8BZJ7,G5E8Q5,G5E8Q6,Q3TSY8 | |||
|association_with_transcript=269bp_to_ENSMUST00000045366,ENSMUST00000110838,ENSMUST00000110839,ENSMUST00000110840,NM_001024504,NM_001042649,NM_001042650,NM_001042651,uc009kxg.1,uc009kxh.1,uc009kxi.1,uc009kxj.1,uc009kxk.1,uc009kxl.1,uc012fzx.1_5end | |||
|description=CAGE_peak_1_at_Dcun1d2_5end | |||
|id=chr8:13287814..13287856,- | |||
|ontology_enrichment_celltype=CL:0000117!1.60e-08!23;CL:0000337!1.60e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.60e-08,23;CL:0000337,1.60e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!6.01e-16!63;UBERON:0000955!6.35e-15!50;UBERON:0006238!6.35e-15!50;UBERON:0000153!1.05e-14!94;UBERON:0001049!1.31e-14!52;UBERON:0005068!1.31e-14!52;UBERON:0006241!1.31e-14!52;UBERON:0007135!1.31e-14!52;UBERON:0002616!2.37e-14!49;UBERON:0007811!3.57e-14!86;UBERON:0002020!2.65e-13!34;UBERON:0002346!2.89e-13!71;UBERON:0003075!2.89e-13!71;UBERON:0007284!2.89e-13!71;UBERON:0001017!1.97e-12!73;UBERON:0005743!1.97e-12!73;UBERON:0003056!3.55e-12!49;UBERON:0002791!4.35e-12!29;UBERON:0003528!4.35e-12!29;UBERON:0001893!4.35e-12!29;UBERON:0000073!7.50e-12!75;UBERON:0001016!7.50e-12!75;UBERON:0004121!2.02e-11!102;UBERON:0000924!2.02e-11!102;UBERON:0006601!2.02e-11!102;UBERON:0003080!2.16e-11!40;UBERON:0002780!7.71e-11!39;UBERON:0001890!7.71e-11!39;UBERON:0006240!7.71e-11!39;UBERON:0004111!4.81e-10!122;UBERON:0000025!1.84e-09!114;UBERON:0000956!1.51e-08!21;UBERON:0001869!1.51e-08!21;UBERON:0000203!1.51e-08!21;UBERON:0000477!4.81e-08!154;UBERON:0002619!9.50e-08!17;UBERON:0000468!3.48e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.20e-16,92;UBERON:0000073,9.75e-16,54;UBERON:0001049,1.31e-14,52;UBERON:0005068,1.31e-14,52;UBERON:0006241,1.31e-14,52;UBERON:0007135,1.31e-14,52;UBERON:0002346,2.48e-14,64;UBERON:0003075,2.48e-14,64;UBERON:0007284,2.48e-14,64;UBERON:0002020,2.65e-13,34;UBERON:0000955,3.15e-13,47;UBERON:0006238,3.15e-13,47;UBERON:0002616,1.13e-12,46;UBERON:0001017,1.97e-12,73;UBERON:0003056,3.55e-12,49;UBERON:0003528,4.35e-12,29;UBERON:0002791,4.35e-12,29;UBERON:0001893,4.35e-12,29;UBERON:0010371,4.43e-12,73;UBERON:0004121,5.93e-12,95;UBERON:0000924,5.93e-12,95;UBERON:0006601,5.93e-12,95;UBERON:0001016,7.50e-12,75;UBERON:0003080,2.16e-11,40;UBERON:0002780,7.71e-11,39;UBERON:0001890,7.71e-11,39;UBERON:0006240,7.71e-11,39;UBERON:0004111,4.81e-10,122;UBERON:0000025,1.84e-09,114;UBERON:0000956,1.51e-08,21;UBERON:0001869,1.51e-08,21;UBERON:0000203,1.51e-08,21;UBERON:0002619,9.50e-08,17 | |||
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| |||
|short_description=p1@Dcun1d2 | |||
}} |
Revision as of 15:14, 14 September 2013
Short description: | p1@Dcun1d2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dcun1d2_5end |
Coexpression cluster: | MCL_coexpression_mm9:311 |
Association with transcript: | 269bp_to_ENSMUST00000045366, ENSMUST00000110838, ENSMUST00000110839, ENSMUST00000110840, NM_001024504, NM_001042649, NM_001042650, NM_001042651, uc009kxg.1, uc009kxh.1, uc009kxi.1, uc009kxj.1, uc009kxk.1, uc009kxl.1, uc012fzx.1_5end |
EntrezGene: | Dcun1d2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.60e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.60e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.20e-16 | 92 |
regional part of nervous system | 9.75e-16 | 54 |
neural tube | 1.31e-14 | 52 |
neural rod | 1.31e-14 | 52 |
future spinal cord | 1.31e-14 | 52 |
neural keel | 1.31e-14 | 52 |
neurectoderm | 2.48e-14 | 64 |
neural plate | 2.48e-14 | 64 |
presumptive neural plate | 2.48e-14 | 64 |
gray matter | 2.65e-13 | 34 |
brain | 3.15e-13 | 47 |
future brain | 3.15e-13 | 47 |
regional part of brain | 1.13e-12 | 46 |
central nervous system | 1.97e-12 | 73 |
pre-chordal neural plate | 3.55e-12 | 49 |
brain grey matter | 4.35e-12 | 29 |
regional part of telencephalon | 4.35e-12 | 29 |
telencephalon | 4.35e-12 | 29 |
ecto-epithelium | 4.43e-12 | 73 |
ectoderm-derived structure | 5.93e-12 | 95 |
ectoderm | 5.93e-12 | 95 |
presumptive ectoderm | 5.93e-12 | 95 |
nervous system | 7.50e-12 | 75 |
anterior neural tube | 2.16e-11 | 40 |
regional part of forebrain | 7.71e-11 | 39 |
forebrain | 7.71e-11 | 39 |
future forebrain | 7.71e-11 | 39 |
anatomical conduit | 4.81e-10 | 122 |
tube | 1.84e-09 | 114 |
cerebral cortex | 1.51e-08 | 21 |
cerebral hemisphere | 1.51e-08 | 21 |
pallium | 1.51e-08 | 21 |
regional part of cerebral cortex | 9.50e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.