FFCP PHASE1:Mm9::chr8:34496088..34496153,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=87|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr8:34496088..34496153,+|id=chr8:34496088..34496153,+|ontology_enrichment_celltype=CL:0000540!2.12e-15!33;CL:0000047!2.12e-15!33;CL:0000031!2.12e-15!33;CL:0000404!2.12e-15!33;CL:0000117!5.67e-15!23;CL:0000337!5.67e-15!23;CL:0000221!9.74e-10!44;CL:0000133!9.74e-10!44;CL:0000393!1.26e-09!39;CL:0000211!1.26e-09!39;CL:0002319!2.26e-09!43|ontology_enrichment_celltype_v019_2=CL:0000540,3.69e-16,33;CL:0000047,3.69e-16,33;CL:0000031,3.69e-16,33;CL:0000404,3.69e-16,33;CL:0000117,1.04e-15,23;CL:0000337,1.04e-15,23;CL:0000393,1.01e-10,39;CL:0000211,1.01e-10,39;CL:0000221,3.07e-10,44;CL:0000133,3.07e-10,44;CL:0002319,7.47e-10,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.19e-21!71;UBERON:0003075!1.19e-21!71;UBERON:0007284!1.19e-21!71;UBERON:0004121!6.21e-21!102;UBERON:0000924!6.21e-21!102;UBERON:0006601!6.21e-21!102;UBERON:0001017!6.55e-21!73;UBERON:0005743!6.55e-21!73;UBERON:0000073!1.35e-20!75;UBERON:0001016!1.35e-20!75;UBERON:0000033!1.50e-20!63;UBERON:0003056!3.72e-18!49;UBERON:0001049!3.73e-18!52;UBERON:0005068!3.73e-18!52;UBERON:0006241!3.73e-18!52;UBERON:0007135!3.73e-18!52;UBERON:0000955!1.78e-16!50;UBERON:0006238!1.78e-16!50;UBERON:0002616!6.43e-16!49;UBERON:0002020!3.26e-15!34;UBERON:0003080!1.47e-13!40;UBERON:0000153!1.86e-13!94;UBERON:0002780!5.12e-13!39;UBERON:0001890!5.12e-13!39;UBERON:0006240!5.12e-13!39;UBERON:0007811!1.31e-12!86;UBERON:0002791!8.34e-12!29;UBERON:0003528!8.34e-12!29;UBERON:0001893!8.34e-12!29;UBERON:0000956!2.03e-07!21;UBERON:0001869!2.03e-07!21;UBERON:0000203!2.03e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.01e-23,64;UBERON:0003075,1.01e-23,64;UBERON:0007284,1.01e-23,64;UBERON:0004121,1.89e-22,95;UBERON:0000924,1.89e-22,95;UBERON:0006601,1.89e-22,95;UBERON:0001017,9.82e-22,73;UBERON:0001016,2.09e-21,75;UBERON:0010371,1.19e-20,73;UBERON:0000073,1.43e-19,54;UBERON:0003056,1.95e-18,49;UBERON:0001049,2.70e-18,52;UBERON:0005068,2.70e-18,52;UBERON:0006241,2.70e-18,52;UBERON:0007135,2.70e-18,52;UBERON:0010314,4.67e-17,92;UBERON:0002020,1.22e-15,34;UBERON:0000955,9.88e-15,47;UBERON:0006238,9.88e-15,47;UBERON:0002616,3.61e-14,46;UBERON:0003080,1.24e-13,40;UBERON:0002780,4.56e-13,39;UBERON:0001890,4.56e-13,39;UBERON:0006240,4.56e-13,39;UBERON:0003528,4.58e-12,29;UBERON:0002791,4.58e-12,29;UBERON:0001893,4.58e-12,29;UBERON:0000956,1.78e-07,21;UBERON:0001869,1.78e-07,21;UBERON:0000203,1.78e-07,21|phase1_expression=3.68342348341026,0,0,1.20985684522732,0,0.671517087647559,0,0.645616617207881,1.267098499365,3.27690336850791,0.513653904676515,0.478632953972018,1.54080656938085,1.13646523144697,0.666219523631325,0.809901069559304,0.699561878128147,0.315462165358238,0.685572168028694,0.84877930359606,2.55129870453209,1.09220046320974,1.04479915655574,0,0.68822784320151,0.57423196411502,0,0.646413698057667,0.380046838912748,0,0.221730510655305,1.90509202037889,0.61506478758457,0,0.288851619751275,0,0.612508068787107,2.51118978442145,2.3440060335714,0.523523743973798,1.76469446409304,3.41522742479223,1.45653105909346,0.251793635951155,0.608261587317087,0.183546752161682,0.782391344348039,0.436050312760893,0.878744730937887,1.1665793944457,0,0,1.8456086666351,1.45072428402269,1.68046899571232,0,0.573066879877513,0,10.5204559646991,10.0508286061686,7.60597684207415,0.338844532069132,0,0,0,0,0.599200221036809,1.15265491596466,6.22137673850866,4.45519596494579,5.8890989178387,15.7108041422092,14.1355866209033,7.22695715368229,5.84657373211242,4.5960939330501,5.50579404996943,7.78892762319645,9.21639199537461,8.44072241473241,7.86793734980723,9.37644067002168,5.862842979029,6.75315132038016,6.57032465440283,23.5702868378934,23.2065839702538,11.3703661953433,1.36307147999731,1.73814588245607,2.6087803983151,1.72084775396277,0,0,0,0,0.702222100658759,0.511290967734173,0.519572009205738,0.35333957451034,3.94361575374705,1.28326477414318,0,0,0.432982082022428,0.253359865475099,0,0.68510327831436,0,1.48442139064825,2.25530924795977,2.13125834818499,0.691846491768175,1.65794904607885,0.940709657085638,1.50799909595611,1.48316980640624,1.15679485535929,0.884610551949874,0.970601099684455,1.32504911076236,1.45462575940567,0,8.19786231632332,7.74952815209784,1.02182822083437,0.599075622529601,0.599902730993408,1.52484272487678,6.44099749440738,4.11750542536764,13.0680526197379,3.65031072403781,3.06858548796397,5.194701113989,4.86723789203273,1.52759045775474,0.870848794270651,0,3.36706969418358,4.81445638962004,5.74755261083682,6.30217454318722,6.17889753126432,6.80364991513279,7.43059577652129,8.24575176125614,3.88055056108524,2.58681591519411,3.9712276835242,3.51902248327898,1.7535658594206,3.05851974148158,3.1342694986995,2.05782136407943,2.7864797354589,0.702213187313235,1.02939162845886,0,1.86413195281952,2.34526059981096,1.62055855314913,0.473489471170421,2.36117078096885,1.69693824176116,3.0229412817553,2.41446061259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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr8:34496088..34496153,+ | |||
|id=chr8:34496088..34496153,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.12e-15!33;CL:0000047!2.12e-15!33;CL:0000031!2.12e-15!33;CL:0000404!2.12e-15!33;CL:0000117!5.67e-15!23;CL:0000337!5.67e-15!23;CL:0000221!9.74e-10!44;CL:0000133!9.74e-10!44;CL:0000393!1.26e-09!39;CL:0000211!1.26e-09!39;CL:0002319!2.26e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.69e-16,33;CL:0000047,3.69e-16,33;CL:0000031,3.69e-16,33;CL:0000404,3.69e-16,33;CL:0000117,1.04e-15,23;CL:0000337,1.04e-15,23;CL:0000393,1.01e-10,39;CL:0000211,1.01e-10,39;CL:0000221,3.07e-10,44;CL:0000133,3.07e-10,44;CL:0002319,7.47e-10,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.01e-23,64;UBERON:0003075,1.01e-23,64;UBERON:0007284,1.01e-23,64;UBERON:0004121,1.89e-22,95;UBERON:0000924,1.89e-22,95;UBERON:0006601,1.89e-22,95;UBERON:0001017,9.82e-22,73;UBERON:0001016,2.09e-21,75;UBERON:0010371,1.19e-20,73;UBERON:0000073,1.43e-19,54;UBERON:0003056,1.95e-18,49;UBERON:0001049,2.70e-18,52;UBERON:0005068,2.70e-18,52;UBERON:0006241,2.70e-18,52;UBERON:0007135,2.70e-18,52;UBERON:0010314,4.67e-17,92;UBERON:0002020,1.22e-15,34;UBERON:0000955,9.88e-15,47;UBERON:0006238,9.88e-15,47;UBERON:0002616,3.61e-14,46;UBERON:0003080,1.24e-13,40;UBERON:0002780,4.56e-13,39;UBERON:0001890,4.56e-13,39;UBERON:0006240,4.56e-13,39;UBERON:0003528,4.58e-12,29;UBERON:0002791,4.58e-12,29;UBERON:0001893,4.58e-12,29;UBERON:0000956,1.78e-07,21;UBERON:0001869,1.78e-07,21;UBERON:0000203,1.78e-07,21 | |||
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| |||
|short_description=p@chr8:34496088..34496153,+ | |||
}} |
Revision as of 15:30, 14 September 2013
Short description: | p@chr8:34496088..34496153, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr8:34496088..34496153, + |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.69e-16 | 33 |
neuronal stem cell | 3.69e-16 | 33 |
neuroblast | 3.69e-16 | 33 |
electrically signaling cell | 3.69e-16 | 33 |
CNS neuron (sensu Vertebrata) | 1.04e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.04e-15 | 23 |
electrically responsive cell | 1.01e-10 | 39 |
electrically active cell | 1.01e-10 | 39 |
ectodermal cell | 3.07e-10 | 44 |
neurectodermal cell | 3.07e-10 | 44 |
neural cell | 7.47e-10 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.01e-23 | 64 |
neural plate | 1.01e-23 | 64 |
presumptive neural plate | 1.01e-23 | 64 |
ectoderm-derived structure | 1.89e-22 | 95 |
ectoderm | 1.89e-22 | 95 |
presumptive ectoderm | 1.89e-22 | 95 |
central nervous system | 9.82e-22 | 73 |
nervous system | 2.09e-21 | 75 |
ecto-epithelium | 1.19e-20 | 73 |
regional part of nervous system | 1.43e-19 | 54 |
pre-chordal neural plate | 1.95e-18 | 49 |
neural tube | 2.70e-18 | 52 |
neural rod | 2.70e-18 | 52 |
future spinal cord | 2.70e-18 | 52 |
neural keel | 2.70e-18 | 52 |
structure with developmental contribution from neural crest | 4.67e-17 | 92 |
gray matter | 1.22e-15 | 34 |
brain | 9.88e-15 | 47 |
future brain | 9.88e-15 | 47 |
regional part of brain | 3.61e-14 | 46 |
anterior neural tube | 1.24e-13 | 40 |
regional part of forebrain | 4.56e-13 | 39 |
forebrain | 4.56e-13 | 39 |
future forebrain | 4.56e-13 | 39 |
brain grey matter | 4.58e-12 | 29 |
regional part of telencephalon | 4.58e-12 | 29 |
telencephalon | 4.58e-12 | 29 |
cerebral cortex | 1.78e-07 | 21 |
cerebral hemisphere | 1.78e-07 | 21 |
pallium | 1.78e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.