FFCP PHASE1:Mm9::chr4:11892846..11892899,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=381511|HGNC=|MCL_coexpression_id=189|UniProt=Q3UV70,A2AJQ0|association_with_transcript=0bp_to_NM_001098231,uc008rzz.1_5end|description=CAGE_peak_2_at_Pdp1_5end|id=chr4:11892846..11892899,-|ontology_enrichment_celltype=CL:0002319!1.44e-13!43;CL:0000221!1.15e-12!44;CL:0000133!1.15e-12!44;CL:0000055!3.65e-12!50;CL:0000117!1.27e-10!23;CL:0000337!1.27e-10!23;CL:0000540!4.10e-10!33;CL:0000047!4.10e-10!33;CL:0000031!4.10e-10!33;CL:0000404!4.10e-10!33;CL:0000393!6.54e-09!39;CL:0000211!6.54e-09!39|ontology_enrichment_celltype_v019_2=CL:0002319,2.29e-14,43;CL:0000221,1.09e-13,44;CL:0000133,1.09e-13,44;CL:0000117,1.33e-12,23;CL:0000337,1.33e-12,23;CL:0000540,2.59e-11,33;CL:0000047,2.59e-11,33;CL:0000031,2.59e-11,33;CL:0000404,2.59e-11,33;CL:0000393,7.33e-11,39;CL:0000211,7.33e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.99e-26!75;UBERON:0001016!1.99e-26!75;UBERON:0001017!4.00e-26!73;UBERON:0005743!4.00e-26!73;UBERON:0004121!1.10e-25!102;UBERON:0000924!1.10e-25!102;UBERON:0006601!1.10e-25!102;UBERON:0002346!3.35e-22!71;UBERON:0003075!3.35e-22!71;UBERON:0007284!3.35e-22!71;UBERON:0000033!9.32e-21!63;UBERON:0000955!1.44e-20!50;UBERON:0006238!1.44e-20!50;UBERON:0001049!5.29e-20!52;UBERON:0005068!5.29e-20!52;UBERON:0006241!5.29e-20!52;UBERON:0007135!5.29e-20!52;UBERON:0002616!5.93e-20!49;UBERON:0002020!4.09e-18!34;UBERON:0002791!1.03e-16!29;UBERON:0003528!1.03e-16!29;UBERON:0001893!1.03e-16!29;UBERON:0003056!1.39e-16!49;UBERON:0003080!5.45e-16!40;UBERON:0002780!2.19e-15!39;UBERON:0001890!2.19e-15!39;UBERON:0006240!2.19e-15!39;UBERON:0000956!5.66e-13!21;UBERON:0001869!5.66e-13!21;UBERON:0000203!5.66e-13!21;UBERON:0007811!1.97e-12!86;UBERON:0000153!2.39e-11!94;UBERON:0002619!3.22e-11!17;UBERON:0002021!9.96e-08!10;UBERON:0000411!9.96e-08!10;UBERON:0001950!9.96e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.35e-28,73;UBERON:0001016,2.75e-28,75;UBERON:0004121,7.14e-25,95;UBERON:0000924,7.14e-25,95;UBERON:0006601,7.14e-25,95;UBERON:0000073,7.34e-24,54;UBERON:0001049,6.29e-22,52;UBERON:0005068,6.29e-22,52;UBERON:0006241,6.29e-22,52;UBERON:0007135,6.29e-22,52;UBERON:0002020,9.79e-22,34;UBERON:0002346,1.44e-20,64;UBERON:0003075,1.44e-20,64;UBERON:0007284,1.44e-20,64;UBERON:0003528,5.00e-20,29;UBERON:0002791,5.00e-20,29;UBERON:0001893,5.00e-20,29;UBERON:0000955,5.85e-20,47;UBERON:0006238,5.85e-20,47;UBERON:0002616,2.99e-19,46;UBERON:0003080,1.23e-17,40;UBERON:0002780,6.44e-17,39;UBERON:0001890,6.44e-17,39;UBERON:0006240,6.44e-17,39;UBERON:0003056,9.72e-17,49;UBERON:0010371,8.34e-16,73;UBERON:0000956,1.82e-15,21;UBERON:0001869,1.82e-15,21;UBERON:0000203,1.82e-15,21;UBERON:0002619,2.51e-13,17;UBERON:0010314,3.76e-13,92;UBERON:0002021,4.45e-09,10;UBERON:0000411,4.45e-09,10;UBERON:0001950,4.45e-09,10|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0.16787927191189,0.233612640595526,0.516493293766305,0.563154888606667,0,0,0,0.342401459862411,0.262261207256992,0,0,0,0.157731082679119,0.137114433605739,0,12.0761472014519,0.297872853602656,0,0,0,0.57423196411502,0,0,0,0,0.221730510655305,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,8.56098362233926,6.2853697356099,5.32285581268876,0.782391344348039,8.06693078607652,33.1726135929052,57.3568202269136,8.39918529752175,12.9377307928474,0.335565212115473,0,0.336093799142464,0,0,0,5.46254444320914,6.34789175126439,3.1691570175309,1.0165335962074,0.889294796111139,0.449949858640699,0,0.7104801149461,2.39680088414724,15.7529505181837,6.947204024668,3.51015439662396,5.67877395648731,1.42825492201902,2.65042249141936,9.30930074033651,5.17565543498476,5.51531271966013,98.0031340894559,164.461291453722,135.941781931775,5.40733779693795,6.03818447775904,7.29278718779464,2.79182999001381,12.380777420697,11.0014738399303,5.59794312399969,5.97961059356232,7.26957838718672,0.984440513331393,3.32514864469856,0.289864488701678,0.860423876981386,0,0,0,0,3.7919993435573,7.32850387085648,4.93593408745451,3.88673531961374,0,6.41632387071589,5.09610479413291,0,0.216491041011214,0,0,2.05530983494308,0,9.64873903921361,1.56136794089522,2.43572382649713,1.61430848079241,2.71300752994721,1.99900802130698,1.38233250462643,1.48316980640624,0.578397427679647,0,0.485300549842228,0,0,0,5.5628351432194,1.67557365450764,0,0.359445373517761,0.599902730993408,0.127070227073065,23.9665023047716,53.0700699269607,10.4293112253677,73.0062144807561,37.0787413128979,154.178729063194,93.9376913162317,0.407357455401265,0.373220911830279,0.758168275301024,2.52530227063769,0.910843100738926,1.83921683546778,2.16074555766419,1.9591626318643,1.42876648217788,0.896796041993948,0.843315521037559,5.17406741478031,1.72454394346274,0.378212160335639,0.351902248327898,0.219195732427575,0.556094498451196,1.0447564995665,1.4404749548556,0.796137067273973,0,0.772043721344145,0,0.828503090142008,0.469052119962192,0.180062061461015,0.23674473558521,0.393528463494808,0.154267112887378,0.232533944750408,0,0,0.329119699826961,0.32833492815819,0.486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| ||
|EntrezGene=381511 | |||
|HGNC= | |||
|MCL_coexpression_id=189 | |||
|UniProt=Q3UV70,A2AJQ0 | |||
|association_with_transcript=0bp_to_NM_001098231,uc008rzz.1_5end | |||
|description=CAGE_peak_2_at_Pdp1_5end | |||
|id=chr4:11892846..11892899,- | |||
|ontology_enrichment_celltype=CL:0002319!1.44e-13!43;CL:0000221!1.15e-12!44;CL:0000133!1.15e-12!44;CL:0000055!3.65e-12!50;CL:0000117!1.27e-10!23;CL:0000337!1.27e-10!23;CL:0000540!4.10e-10!33;CL:0000047!4.10e-10!33;CL:0000031!4.10e-10!33;CL:0000404!4.10e-10!33;CL:0000393!6.54e-09!39;CL:0000211!6.54e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.29e-14,43;CL:0000221,1.09e-13,44;CL:0000133,1.09e-13,44;CL:0000117,1.33e-12,23;CL:0000337,1.33e-12,23;CL:0000540,2.59e-11,33;CL:0000047,2.59e-11,33;CL:0000031,2.59e-11,33;CL:0000404,2.59e-11,33;CL:0000393,7.33e-11,39;CL:0000211,7.33e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.99e-26!75;UBERON:0001016!1.99e-26!75;UBERON:0001017!4.00e-26!73;UBERON:0005743!4.00e-26!73;UBERON:0004121!1.10e-25!102;UBERON:0000924!1.10e-25!102;UBERON:0006601!1.10e-25!102;UBERON:0002346!3.35e-22!71;UBERON:0003075!3.35e-22!71;UBERON:0007284!3.35e-22!71;UBERON:0000033!9.32e-21!63;UBERON:0000955!1.44e-20!50;UBERON:0006238!1.44e-20!50;UBERON:0001049!5.29e-20!52;UBERON:0005068!5.29e-20!52;UBERON:0006241!5.29e-20!52;UBERON:0007135!5.29e-20!52;UBERON:0002616!5.93e-20!49;UBERON:0002020!4.09e-18!34;UBERON:0002791!1.03e-16!29;UBERON:0003528!1.03e-16!29;UBERON:0001893!1.03e-16!29;UBERON:0003056!1.39e-16!49;UBERON:0003080!5.45e-16!40;UBERON:0002780!2.19e-15!39;UBERON:0001890!2.19e-15!39;UBERON:0006240!2.19e-15!39;UBERON:0000956!5.66e-13!21;UBERON:0001869!5.66e-13!21;UBERON:0000203!5.66e-13!21;UBERON:0007811!1.97e-12!86;UBERON:0000153!2.39e-11!94;UBERON:0002619!3.22e-11!17;UBERON:0002021!9.96e-08!10;UBERON:0000411!9.96e-08!10;UBERON:0001950!9.96e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.35e-28,73;UBERON:0001016,2.75e-28,75;UBERON:0004121,7.14e-25,95;UBERON:0000924,7.14e-25,95;UBERON:0006601,7.14e-25,95;UBERON:0000073,7.34e-24,54;UBERON:0001049,6.29e-22,52;UBERON:0005068,6.29e-22,52;UBERON:0006241,6.29e-22,52;UBERON:0007135,6.29e-22,52;UBERON:0002020,9.79e-22,34;UBERON:0002346,1.44e-20,64;UBERON:0003075,1.44e-20,64;UBERON:0007284,1.44e-20,64;UBERON:0003528,5.00e-20,29;UBERON:0002791,5.00e-20,29;UBERON:0001893,5.00e-20,29;UBERON:0000955,5.85e-20,47;UBERON:0006238,5.85e-20,47;UBERON:0002616,2.99e-19,46;UBERON:0003080,1.23e-17,40;UBERON:0002780,6.44e-17,39;UBERON:0001890,6.44e-17,39;UBERON:0006240,6.44e-17,39;UBERON:0003056,9.72e-17,49;UBERON:0010371,8.34e-16,73;UBERON:0000956,1.82e-15,21;UBERON:0001869,1.82e-15,21;UBERON:0000203,1.82e-15,21;UBERON:0002619,2.51e-13,17;UBERON:0010314,3.76e-13,92;UBERON:0002021,4.45e-09,10;UBERON:0000411,4.45e-09,10;UBERON:0001950,4.45e-09,10 | |||
|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0.16787927191189,0.233612640595526,0.516493293766305,0.563154888606667,0,0,0,0.342401459862411,0.262261207256992,0,0,0,0.157731082679119,0.137114433605739,0,12.0761472014519,0.297872853602656,0,0,0,0.57423196411502,0,0,0,0,0.221730510655305,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,8.56098362233926,6.2853697356099,5.32285581268876,0.782391344348039,8.06693078607652,33.1726135929052,57.3568202269136,8.39918529752175,12.9377307928474,0.335565212115473,0,0.336093799142464,0,0,0,5.46254444320914,6.34789175126439,3.1691570175309,1.0165335962074,0.889294796111139,0.449949858640699,0,0.7104801149461,2.39680088414724,15.7529505181837,6.947204024668,3.51015439662396,5.67877395648731,1.42825492201902,2.65042249141936,9.30930074033651,5.17565543498476,5.51531271966013,98.0031340894559,164.461291453722,135.941781931775,5.40733779693795,6.03818447775904,7.29278718779464,2.79182999001381,12.380777420697,11.0014738399303,5.59794312399969,5.97961059356232,7.26957838718672,0.984440513331393,3.32514864469856,0.289864488701678,0.860423876981386,0,0,0,0,3.7919993435573,7.32850387085648,4.93593408745451,3.88673531961374,0,6.41632387071589,5.09610479413291,0,0.216491041011214,0,0,2.05530983494308,0,9.64873903921361,1.56136794089522,2.43572382649713,1.61430848079241,2.71300752994721,1.99900802130698,1.38233250462643,1.48316980640624,0.578397427679647,0,0.485300549842228,0,0,0,5.5628351432194,1.67557365450764,0,0.359445373517761,0.599902730993408,0.127070227073065,23.9665023047716,53.0700699269607,10.4293112253677,73.0062144807561,37.0787413128979,154.178729063194,93.9376913162317,0.407357455401265,0.373220911830279,0.758168275301024,2.52530227063769,0.910843100738926,1.83921683546778,2.16074555766419,1.9591626318643,1.42876648217788,0.896796041993948,0.843315521037559,5.17406741478031,1.72454394346274,0.378212160335639,0.351902248327898,0.219195732427575,0.556094498451196,1.0447564995665,1.4404749548556,0.796137067273973,0,0.772043721344145,0,0.828503090142008,0.469052119962192,0.180062061461015,0.23674473558521,0.393528463494808,0.154267112887378,0.232533944750408,0,0,0.329119699826961,0.32833492815819,0.486412857275134,0.438599962275997,1.3173006917463,0.536825675041487,13.6688466566683,12.9659811597898,0,0.264450566663544,3.62590025909898,1.62565670302307,1.28867461322093,0.403367049246685,0.22237804384487,0.380451252225118,0,0.658795818896044,0,0.596869416123452,0.38992817423824,0,0.216138049874694,0.199141273254367,0,0.456994050438915,1.1270773567308,0,0,0.280543279561274,0.252946148497029,0.442830443938806,0.156998727841375,0.246794327843601,0.296452627087149,0.500535317148282,0.196558995113203,0,0,0.241177159752417,0.25462585178142,0,0.162135226775035,0,0,0,0.624075346229121,0,0,0,1.10851914099963,1.70542270593436,0.977789858652155,0.509235257325564,0.234690248288502,0.335012514883631,0.238043640886014,0,0.315270288212382,0.44292937929755,0.318909537314974,4.7520361267564,10.3610989119537,8.24499633914616,1.50791283939272,1.63171705145613,0,0,9.47248480927973,8.90808818100744,14.7541450839008,0.757412781613119,1.26203287766503,0.780877488593277,1.50796378412959,1.19484398976276,2.00518806674155,1.69845918473299,2.02405350837447,1.46127928955656,1.58115111178609,15.1021018718249,4.11626247103979,0,0.162886959353576,0.329940245945071,0,2.91336763385978,0,0,0,0,0.258428293168221,0,0.356497378384721,0.948110273807448,0,0,3.06395645178409,1.26042765821917,0,0.428674070063185,0.886701168211368,0.535106452806212,0.493647061806363,1.522324745573,0.469343416127421,0.21183207086382,1.10264199027481,0.16488625294148,1.13025098687134,0.361877549568935,0.119372344003136,0.164140899745061,0,11.3109434226411,0,0.206386867963223,0,0,0,0,0.169978429993855,0,0.138199973804424,0,1.58167996790568,1.21991680276109,0.216010681643603,1.04544148007234,0.436725127492355,0.809186078308924,1.1571483801547,0,0,31.0669656543463,2.25477175473676,1.79419855252775,1.32366792365678,0.777804753376191,1.93739735216597,1.01373675294467,2.11243029562357,1.95306577265925,3.56521771047417,3.14059357073808,2.88030006257865,0.316011120628178,0.405450430580328,0.513554785824136,0.51968329191118,0.537080087002444,0.39736270956253,0.120195449519969,0,0.201932899896295,0.0762068066549998,0.100826185136841,0.974578807397524,0.288635524920988,0.233753804363138,3.62768613784338,0,0.269141569828427,0,0.386379188064381,0.93841237725591,0.36630324853453,0.428736758158132,22.5707446815914,23.1548255472997,28.0798394269378,28.0718801585304,26.2935368985842,58.2320141805046,48.3452094329408,51.9767325178491,59.4423988255971,97.425617931604,78.6995673862766,3.21740777510948,3.59122386060928,4.43907374960749,2.18796045361465,1.25767897576789,2.02227859295016,2.44471400581777,1.44224540067226,0.962757628775446,2.27427490587418,2.28131369901216,2.07488975524684,1.87283014939765,2.81710670581425,1.43588672389033,0.952587382566147,1.62238056322798,1.54327376370964,1.64834360321323,1.76638704161277,2.74295401908332,1.77475806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| |||
|short_description=p2@Pdp1 | |||
}} |
Revision as of 03:37, 14 September 2013
Short description: | p2@Pdp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pdp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:189 |
Association with transcript: | 0bp_to_NM_001098231, uc008rzz.1_5end |
EntrezGene: | Pdp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.29e-14 | 43 |
ectodermal cell | 1.09e-13 | 44 |
neurectodermal cell | 1.09e-13 | 44 |
CNS neuron (sensu Vertebrata) | 1.33e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.33e-12 | 23 |
neuron | 2.59e-11 | 33 |
neuronal stem cell | 2.59e-11 | 33 |
neuroblast | 2.59e-11 | 33 |
electrically signaling cell | 2.59e-11 | 33 |
electrically responsive cell | 7.33e-11 | 39 |
electrically active cell | 7.33e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.35e-28 | 73 |
nervous system | 2.75e-28 | 75 |
ectoderm-derived structure | 7.14e-25 | 95 |
ectoderm | 7.14e-25 | 95 |
presumptive ectoderm | 7.14e-25 | 95 |
regional part of nervous system | 7.34e-24 | 54 |
neural tube | 6.29e-22 | 52 |
neural rod | 6.29e-22 | 52 |
future spinal cord | 6.29e-22 | 52 |
neural keel | 6.29e-22 | 52 |
gray matter | 9.79e-22 | 34 |
neurectoderm | 1.44e-20 | 64 |
neural plate | 1.44e-20 | 64 |
presumptive neural plate | 1.44e-20 | 64 |
brain grey matter | 5.00e-20 | 29 |
regional part of telencephalon | 5.00e-20 | 29 |
telencephalon | 5.00e-20 | 29 |
brain | 5.85e-20 | 47 |
future brain | 5.85e-20 | 47 |
regional part of brain | 2.99e-19 | 46 |
anterior neural tube | 1.23e-17 | 40 |
regional part of forebrain | 6.44e-17 | 39 |
forebrain | 6.44e-17 | 39 |
future forebrain | 6.44e-17 | 39 |
pre-chordal neural plate | 9.72e-17 | 49 |
ecto-epithelium | 8.34e-16 | 73 |
cerebral cortex | 1.82e-15 | 21 |
cerebral hemisphere | 1.82e-15 | 21 |
pallium | 1.82e-15 | 21 |
regional part of cerebral cortex | 2.51e-13 | 17 |
structure with developmental contribution from neural crest | 3.76e-13 | 92 |
occipital lobe | 4.45e-09 | 10 |
visual cortex | 4.45e-09 | 10 |
neocortex | 4.45e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.