FFCP PHASE1:Mm9::chr15:81756578..81756653,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=78929|HGNC=|MCL_coexpression_id=1685|UniProt=Q9D2C6|association_with_transcript=0bp_to_ENSMUST00000023113,NM_030229,uc007wxq.1,uc007wxr.1_5end|description=CAGE_peak_1_at_Polr3h_5end|id=chr15:81756578..81756653,-|ontology_enrichment_celltype=CL:0000221!5.24e-23!44;CL:0000133!5.24e-23!44;CL:0000055!6.89e-23!50;CL:0002319!1.32e-22!43;CL:0000548!1.63e-18!115;CL:0000004!1.63e-18!115;CL:0000255!1.63e-18!115;CL:0000034!4.32e-17!97;CL:0000723!4.45e-17!91;CL:0000048!4.45e-17!91;CL:0000144!9.59e-17!121;CL:0000012!9.59e-17!121;CL:0000393!1.66e-16!39;CL:0000211!1.66e-16!39;CL:0002371!2.87e-16!118;CL:0002321!8.94e-16!70;CL:0000220!8.94e-16!70;CL:0000540!1.53e-15!33;CL:0000047!1.53e-15!33;CL:0000031!1.53e-15!33;CL:0000404!1.53e-15!33;CL:0000117!1.84e-12!23;CL:0000337!1.84e-12!23;CL:0000219!3.82e-08!54;CL:0000333!4.27e-08!10;CL:0000095!4.27e-08!10;CL:0000243!4.27e-08!10;CL:0000123!4.27e-08!10;CL:0000125!4.27e-08!10;CL:0000030!4.27e-08!10;CL:0000339!4.27e-08!10;CL:0002453!8.62e-07!8|ontology_enrichment_celltype_v019_2=CL:0000221,5.24e-23,44;CL:0000133,5.24e-23,44;CL:0002319,1.32e-22,43;CL:0000034,4.32e-17,97;CL:0000723,4.45e-17,91;CL:0000048,4.45e-17,91;CL:0000393,1.66e-16,39;CL:0000211,1.66e-16,39;CL:0002321,8.73e-16,70;CL:0000540,1.53e-15,33;CL:0000047,1.53e-15,33;CL:0000031,1.53e-15,33;CL:0000404,1.53e-15,33;CL:0000117,1.84e-12,23;CL:0000337,1.84e-12,23;CL:0000219,3.82e-08,54;CL:0000333,4.27e-08,10;CL:0000095,4.27e-08,10;CL:0000243,4.27e-08,10;CL:0000123,4.27e-08,10;CL:0000125,4.27e-08,10;CL:0000030,4.27e-08,10;CL:0000339,4.27e-08,10;CL:0002453,8.62e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.19e-28!75;UBERON:0001016!1.19e-28!75;UBERON:0001017!3.88e-27!73;UBERON:0005743!3.88e-27!73;UBERON:0004121!6.03e-24!102;UBERON:0000924!6.03e-24!102;UBERON:0006601!6.03e-24!102;UBERON:0002346!8.99e-18!71;UBERON:0003075!8.99e-18!71;UBERON:0007284!8.99e-18!71;UBERON:0001049!1.22e-17!52;UBERON:0005068!1.22e-17!52;UBERON:0006241!1.22e-17!52;UBERON:0007135!1.22e-17!52;UBERON:0000955!2.31e-16!50;UBERON:0006238!2.31e-16!50;UBERON:0002616!2.42e-16!49;UBERON:0002020!8.17e-16!34;UBERON:0000033!1.05e-14!63;UBERON:0007811!1.14e-13!86;UBERON:0002791!5.06e-13!29;UBERON:0003528!5.06e-13!29;UBERON:0001893!5.06e-13!29;UBERON:0003080!7.47e-13!40;UBERON:0002780!1.15e-12!39;UBERON:0001890!1.15e-12!39;UBERON:0006240!1.15e-12!39;UBERON:0003056!2.25e-12!49;UBERON:0000153!2.44e-11!94;UBERON:0000956!2.81e-09!21;UBERON:0001869!2.81e-09!21;UBERON:0000203!2.81e-09!21;UBERON:0002619!2.98e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.19e-28,75;UBERON:0001017,3.88e-27,73;UBERON:0004121,3.22e-24,95;UBERON:0000924,3.22e-24,95;UBERON:0006601,3.22e-24,95;UBERON:0000073,3.36e-19,54;UBERON:0002346,2.40e-18,64;UBERON:0003075,2.40e-18,64;UBERON:0007284,2.40e-18,64;UBERON:0001049,1.22e-17,52;UBERON:0005068,1.22e-17,52;UBERON:0006241,1.22e-17,52;UBERON:0007135,1.22e-17,52;UBERON:0010371,3.30e-17,73;UBERON:0002020,8.17e-16,34;UBERON:0000955,5.71e-15,47;UBERON:0006238,5.71e-15,47;UBERON:0002616,5.99e-15,46;UBERON:0003528,5.06e-13,29;UBERON:0002791,5.06e-13,29;UBERON:0001893,5.06e-13,29;UBERON:0003080,7.47e-13,40;UBERON:0002780,1.15e-12,39;UBERON:0001890,1.15e-12,39;UBERON:0006240,1.15e-12,39;UBERON:0003056,2.25e-12,49;UBERON:0000956,2.81e-09,21;UBERON:0001869,2.81e-09,21;UBERON:0000203,2.81e-09,21;UBERON:0010314,4.63e-09,92;UBERON:0002619,2.98e-07,17|phase1_expression=15.2141404749554,1.04692622291808,1.36499771816861,0.30246421130683,0,10.0727563147134,10.9797941079897,9.8133725815598,40.969518146135,33.2371627377231,48.7971209442689,64.6154487862225,7.19043065711064,7.78041581529077,27.3150004688843,25.1069331563384,28.682037003254,17.192688012024,12.614527891728,20.3707032863054,14.3723160355308,26.0142292146319,27.6871776487272,7.35965144849671,6.8822784320151,2.8711598205751,5.59990595006797,5.60225204983311,4.56056206695297,8.56902441183765,9.5344119581781,57.1527606113668,56.5859604577805,31.6963362030877,22.5304263405994,18.1195763440757,19.8044275574498,1.67412652294763,3.906676722619,1.57057123192139,0.588231488031014,0,0.971020706062307,31.0965140399676,22.5056787307322,24.4117180375036,46.9434806608824,81.541408486287,88.0941592765232,64.9395862908107,42.2758993308595,67.5637052515366,9.2280433331755,5.80289713609076,4.36921938885203,15.6928255981928,12.3209379173665,18.5641953219879,30.7521020506589,28.0365219014177,18.3811107016792,31.8513860144984,11.5608323494448,18.4479442042687,20.7661936139065,25.5772841380596,65.3128240930122,179.429948585166,40.0241903510724,40.7717933761706,34.0726437389239,58.5584518027797,45.0571823541292,30.6226998037385,33.4500693853645,22.9804696652505,27.5289702498472,25.9205296312931,29.3388478519425,30.9932776165956,27.8122436551325,34.9011958273029,36.8521558681823,30.9519435517424,29.4900618209243,23.5702868378934,40.148813985347,32.247104127777,54.7500377798921,67.7876894157866,7.8263411949453,10.3250865237766,16.319312008986,12.4131734076698,7.79731700937203,7.16843019355737,8.70755404816862,18.0656141932741,22.3415963958467,18.0203183000274,24.7884418806958,14.115912515575,22.9324715735981,28.4426681261332,10.3915699685383,11.4011939463794,11.62706223534,6.73684890342454,7.76813650941515,13.9535610720935,14.5727674483554,12.7875500891099,13.6063143381075,12.3592565253151,13.4051126134703,15.9596570988688,6.67426412882809,5.20557684911682,15.9229899350977,11.9707468961083,13.2504911076236,14.5462575940567,14.9113408974498,18.4451902117275,21.154117388159,4.08731288333746,20.6082014150183,28.7953310876836,20.9665874670557,18.7238299256028,22.4175295381127,25.00521607046,24.8568777874955,18.9229438424445,19.7398642331582,20.6046404096052,17.2108524907035,10.3257785606377,7.83440551144392,10.7325346502102,13.9228873970093,20.4612872945791,12.4242869565691,13.7141384230501,20.0027307504904,16.7828973573153,17.4285207681096,11.1242449417777,10.1316956678436,7.37513712654495,8.62160508403349,12.0557652835166,14.4584569597311,9.4028084960985,11.7295817752528,14.927570011387,27.3863143052162,24.9627469901274,23.3014069504386,6.42089894860056,8.67746421930056,10.6236616261999,6.39210786080068,6.88674811115913,7.55908853148153,5.8133486187602,5.90201483079162,6.65562451492866,6.58239399653922,6.7308660272429,8.35008738322314,8.91819923294527,6.14740322814942,6.57611451925822,17.0334858336943,30.4597652642682,0.991256348951394,4.49565963328025,13.0105832826493,9.0572302025571,9.02072229254653,6.25218926332362,6.22658522765637,4.75564065281398,8.0669940462567,4.77626968699632,9.0480675168097,8.15721535368718,6.82374304916921,6.29173586057955,4.10662294761919,6.77080329064848,18.0184505905428,13.5955730005577,7.88954149711563,12.2190796707189,10.0855293327165,12.2036326609154,9.73842671713562,10.3327103585722,10.6759134932135,9.25478729413504,8.00422093135302,17.685581205906,22.8008434331315,21.1370385641763,17.4459704394113,14.9529839046498,14.0044218479781,8.91858026097513,11.5116011010275,15.1008777253445,11.5014565221884,15.6299198020771,10.9213185590096,15.1547326768267,10.7638448113147,9.16642690590398,5.54259570499814,14.4013472945568,11.8964432802679,15.2770577197669,10.7957514212711,7.03526281255626,6.42717830392237,7.02481132288076,8.35466263762812,11.7376285513851,10.5240147313941,8.35702905050264,7.7708241839653,7.95569822198314,7.53956419696361,4.89515115436839,13.769399644533,11.8652800911035,19.266070798535,18.4022347949759,15.2459499200308,9.08895337935743,25.5561657727168,24.2072021463916,23.4811503528751,28.1983181584011,31.8602103937824,27.7415000173056,18.2164815753702,23.0882127749936,22.1361155650053,15.7447445046685,10.2196861349953,19.7652820070653,16.9402437727719,10.8880281161873,5.30980553359851,10.4395673546642,11.4882951646605,9.8074641473067,7.38254732201932,7.07100840271033,10.0787034335606,8.36127577798263,10.3384239731569,10.1131762539461,10.5418608574999,12.3762651897824,11.234506989875,13.6846431463796,19.5331612511959,14.5749183821483,14.7192393923087,12.1290795969408,17.6067452044269,17.3545020995322,7.04015124191131,18.2175580942885,8.38007912608855,9.23363016472288,9.52640117505843,13.148217634338,13.6084472163576,15.9216672752709,7.28702091574627,14.0923229527987,12.1318325366475,17.1301100409475,18.1490636822317,20.5321618135113,21.3242995244799,25.394377225924,15.8079939894285,16.374319921868,17.5513966731618,4.77335309007557,9.49007980743406,7.5228202836934,9.39646465149671,9.19988502463662,9.60795280483181,10.6542833644008,10.0010681427656,8.11443420150492,5.57344385154709,6.21339313086926,23.675103424736,14.054555328134,13.567596217482,11.4726201122988,11.8827037599513,10.1373675294467,12.3225100578042,17.5775919539333,26.2148361064277,23.4336597201226,17.5698303817298,8.84831137758899,17.6370937302443,17.9744175038448,16.3700236952022,13.6060288707286,8.94066096515692,14.6638448414362,14.0305050815848,11.1063094942962,15.39377494431,9.88096614341037,8.77120926657772,9.1401249558313,8.18138315270983,7.70883304291719,14.6510729226883,12.829081495155,10.0730769818447,7.92077335531981,8.82107634620555,11.5385523288377,13.076471123823,10.5330141847426,20.8958181768315,23.476587061866,21.7700295106971,16.497905504994,40.4198686664679,18.8848474347425,23.6257875081132,23.8670237708837,20.8445508132734,28.4768171463501,13.3885678383588,7.58147259461959,14.8538237006097,12.6415492875513,15.3017608718427,13.604419625301,10.8900896622791,10.0957178047058,8.98573786857083,10.8659801058433,10.3926512954998,10.5630751176203,10.0196412992774,11.7166028900911,10.1660780051435,14.2888107384922,12.7472758539341,9.83837024364896,10.714233420886,9.56792980873583,7.20025430009372,10.1161209510822,9.77588378784016,9.30217066446903,10.9166881281784,11.8460451048347,10.2439664808753,7.62902163169744,11.9507620184358,10.661703161497,11.0330566855482,10.3429706494342,11.0492381655816,11.4653262477615,11.5743966588685,14.4890135204009,10.5269223800434,7.52048689169044,8.7992632751668,9.70602244125868,9.7384490960577|short_description=p1@Polr3h}} | ||
|EntrezGene=78929 | |||
|HGNC= | |||
|MCL_coexpression_id=1685 | |||
|UniProt=Q9D2C6 | |||
|association_with_transcript=0bp_to_ENSMUST00000023113,NM_030229,uc007wxq.1,uc007wxr.1_5end | |||
|description=CAGE_peak_1_at_Polr3h_5end | |||
|id=chr15:81756578..81756653,- | |||
|ontology_enrichment_celltype=CL:0000221!5.24e-23!44;CL:0000133!5.24e-23!44;CL:0000055!6.89e-23!50;CL:0002319!1.32e-22!43;CL:0000548!1.63e-18!115;CL:0000004!1.63e-18!115;CL:0000255!1.63e-18!115;CL:0000034!4.32e-17!97;CL:0000723!4.45e-17!91;CL:0000048!4.45e-17!91;CL:0000144!9.59e-17!121;CL:0000012!9.59e-17!121;CL:0000393!1.66e-16!39;CL:0000211!1.66e-16!39;CL:0002371!2.87e-16!118;CL:0002321!8.94e-16!70;CL:0000220!8.94e-16!70;CL:0000540!1.53e-15!33;CL:0000047!1.53e-15!33;CL:0000031!1.53e-15!33;CL:0000404!1.53e-15!33;CL:0000117!1.84e-12!23;CL:0000337!1.84e-12!23;CL:0000219!3.82e-08!54;CL:0000333!4.27e-08!10;CL:0000095!4.27e-08!10;CL:0000243!4.27e-08!10;CL:0000123!4.27e-08!10;CL:0000125!4.27e-08!10;CL:0000030!4.27e-08!10;CL:0000339!4.27e-08!10;CL:0002453!8.62e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.24e-23,44;CL:0000133,5.24e-23,44;CL:0002319,1.32e-22,43;CL:0000034,4.32e-17,97;CL:0000723,4.45e-17,91;CL:0000048,4.45e-17,91;CL:0000393,1.66e-16,39;CL:0000211,1.66e-16,39;CL:0002321,8.73e-16,70;CL:0000540,1.53e-15,33;CL:0000047,1.53e-15,33;CL:0000031,1.53e-15,33;CL:0000404,1.53e-15,33;CL:0000117,1.84e-12,23;CL:0000337,1.84e-12,23;CL:0000219,3.82e-08,54;CL:0000333,4.27e-08,10;CL:0000095,4.27e-08,10;CL:0000243,4.27e-08,10;CL:0000123,4.27e-08,10;CL:0000125,4.27e-08,10;CL:0000030,4.27e-08,10;CL:0000339,4.27e-08,10;CL:0002453,8.62e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.19e-28!75;UBERON:0001016!1.19e-28!75;UBERON:0001017!3.88e-27!73;UBERON:0005743!3.88e-27!73;UBERON:0004121!6.03e-24!102;UBERON:0000924!6.03e-24!102;UBERON:0006601!6.03e-24!102;UBERON:0002346!8.99e-18!71;UBERON:0003075!8.99e-18!71;UBERON:0007284!8.99e-18!71;UBERON:0001049!1.22e-17!52;UBERON:0005068!1.22e-17!52;UBERON:0006241!1.22e-17!52;UBERON:0007135!1.22e-17!52;UBERON:0000955!2.31e-16!50;UBERON:0006238!2.31e-16!50;UBERON:0002616!2.42e-16!49;UBERON:0002020!8.17e-16!34;UBERON:0000033!1.05e-14!63;UBERON:0007811!1.14e-13!86;UBERON:0002791!5.06e-13!29;UBERON:0003528!5.06e-13!29;UBERON:0001893!5.06e-13!29;UBERON:0003080!7.47e-13!40;UBERON:0002780!1.15e-12!39;UBERON:0001890!1.15e-12!39;UBERON:0006240!1.15e-12!39;UBERON:0003056!2.25e-12!49;UBERON:0000153!2.44e-11!94;UBERON:0000956!2.81e-09!21;UBERON:0001869!2.81e-09!21;UBERON:0000203!2.81e-09!21;UBERON:0002619!2.98e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.19e-28,75;UBERON:0001017,3.88e-27,73;UBERON:0004121,3.22e-24,95;UBERON:0000924,3.22e-24,95;UBERON:0006601,3.22e-24,95;UBERON:0000073,3.36e-19,54;UBERON:0002346,2.40e-18,64;UBERON:0003075,2.40e-18,64;UBERON:0007284,2.40e-18,64;UBERON:0001049,1.22e-17,52;UBERON:0005068,1.22e-17,52;UBERON:0006241,1.22e-17,52;UBERON:0007135,1.22e-17,52;UBERON:0010371,3.30e-17,73;UBERON:0002020,8.17e-16,34;UBERON:0000955,5.71e-15,47;UBERON:0006238,5.71e-15,47;UBERON:0002616,5.99e-15,46;UBERON:0003528,5.06e-13,29;UBERON:0002791,5.06e-13,29;UBERON:0001893,5.06e-13,29;UBERON:0003080,7.47e-13,40;UBERON:0002780,1.15e-12,39;UBERON:0001890,1.15e-12,39;UBERON:0006240,1.15e-12,39;UBERON:0003056,2.25e-12,49;UBERON:0000956,2.81e-09,21;UBERON:0001869,2.81e-09,21;UBERON:0000203,2.81e-09,21;UBERON:0010314,4.63e-09,92;UBERON:0002619,2.98e-07,17 | |||
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| |||
|short_description=p1@Polr3h | |||
}} |
Revision as of 11:18, 13 September 2013
Short description: | p1@Polr3h |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Polr3h_5end |
Coexpression cluster: | MCL_coexpression_mm9:1685 |
Association with transcript: | 0bp_to_ENSMUST00000023113, NM_030229, uc007wxq.1, uc007wxr.1_5end |
EntrezGene: | Polr3h |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.24e-23 | 44 |
neurectodermal cell | 5.24e-23 | 44 |
neural cell | 1.32e-22 | 43 |
stem cell | 4.32e-17 | 97 |
somatic stem cell | 4.45e-17 | 91 |
multi fate stem cell | 4.45e-17 | 91 |
electrically responsive cell | 1.66e-16 | 39 |
electrically active cell | 1.66e-16 | 39 |
embryonic cell | 8.73e-16 | 70 |
neuron | 1.53e-15 | 33 |
neuronal stem cell | 1.53e-15 | 33 |
neuroblast | 1.53e-15 | 33 |
electrically signaling cell | 1.53e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.84e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.84e-12 | 23 |
motile cell | 3.82e-08 | 54 |
migratory neural crest cell | 4.27e-08 | 10 |
neuron associated cell | 4.27e-08 | 10 |
glial cell (sensu Vertebrata) | 4.27e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 4.27e-08 | 10 |
glial cell | 4.27e-08 | 10 |
glioblast | 4.27e-08 | 10 |
glioblast (sensu Vertebrata) | 4.27e-08 | 10 |
oligodendrocyte precursor cell | 8.62e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.19e-28 | 75 |
central nervous system | 3.88e-27 | 73 |
ectoderm-derived structure | 3.22e-24 | 95 |
ectoderm | 3.22e-24 | 95 |
presumptive ectoderm | 3.22e-24 | 95 |
regional part of nervous system | 3.36e-19 | 54 |
neurectoderm | 2.40e-18 | 64 |
neural plate | 2.40e-18 | 64 |
presumptive neural plate | 2.40e-18 | 64 |
neural tube | 1.22e-17 | 52 |
neural rod | 1.22e-17 | 52 |
future spinal cord | 1.22e-17 | 52 |
neural keel | 1.22e-17 | 52 |
ecto-epithelium | 3.30e-17 | 73 |
gray matter | 8.17e-16 | 34 |
brain | 5.71e-15 | 47 |
future brain | 5.71e-15 | 47 |
regional part of brain | 5.99e-15 | 46 |
brain grey matter | 5.06e-13 | 29 |
regional part of telencephalon | 5.06e-13 | 29 |
telencephalon | 5.06e-13 | 29 |
anterior neural tube | 7.47e-13 | 40 |
regional part of forebrain | 1.15e-12 | 39 |
forebrain | 1.15e-12 | 39 |
future forebrain | 1.15e-12 | 39 |
pre-chordal neural plate | 2.25e-12 | 49 |
cerebral cortex | 2.81e-09 | 21 |
cerebral hemisphere | 2.81e-09 | 21 |
pallium | 2.81e-09 | 21 |
structure with developmental contribution from neural crest | 4.63e-09 | 92 |
regional part of cerebral cortex | 2.98e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.