FFCP PHASE1:Mm9::chr12:28021078..28021088,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=100|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:28021078..28021088,+|id=chr12:28021078..28021088,+|ontology_enrichment_celltype=CL:0000117!2.20e-24!23;CL:0000337!2.20e-24!23;CL:0000540!9.71e-18!33;CL:0000047!9.71e-18!33;CL:0000031!9.71e-18!33;CL:0000404!9.71e-18!33;CL:0000393!2.78e-14!39;CL:0000211!2.78e-14!39;CL:0002609!4.49e-14!6;CL:0002319!1.61e-12!43;CL:0000221!3.94e-12!44;CL:0000133!3.94e-12!44;CL:0000055!3.97e-10!50;CL:0002608!6.26e-08!3;CL:0000120!7.28e-08!3|ontology_enrichment_celltype_v019_2=CL:0000120,3.72e-37,3;CL:0002609,4.28e-34,6;CL:0000117,1.06e-26,23;CL:0000337,1.06e-26,23;CL:0000540,1.03e-18,33;CL:0000047,1.03e-18,33;CL:0000031,1.03e-18,33;CL:0000404,1.03e-18,33;CL:0002608,7.36e-18,3;CL:0000393,7.07e-16,39;CL:0000211,7.07e-16,39;CL:0002319,2.01e-14,43;CL:0000221,4.23e-14,44;CL:0000133,4.23e-14,44;CL:0002321,6.38e-09,70;CL:0000723,7.08e-07,91;CL:0000048,7.08e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!3.07e-11!34;UBERON:0003056!4.56e-11!49;UBERON:0001017!2.75e-10!73;UBERON:0005743!2.75e-10!73;UBERON:0000073!7.34e-10!75;UBERON:0001016!7.34e-10!75;UBERON:0001049!2.62e-09!52;UBERON:0005068!2.62e-09!52;UBERON:0006241!2.62e-09!52;UBERON:0007135!2.62e-09!52;UBERON:0002780!3.54e-09!39;UBERON:0001890!3.54e-09!39;UBERON:0006240!3.54e-09!39;UBERON:0002346!3.63e-09!71;UBERON:0003075!3.63e-09!71;UBERON:0007284!3.63e-09!71;UBERON:0003080!7.38e-09!40;UBERON:0004121!7.83e-09!102;UBERON:0000924!7.83e-09!102;UBERON:0006601!7.83e-09!102;UBERON:0002791!1.60e-08!29;UBERON:0003528!1.60e-08!29;UBERON:0001893!1.60e-08!29;UBERON:0000033!1.65e-08!63;UBERON:0000153!7.22e-08!94;UBERON:0002616!1.58e-07!49;UBERON:0000955!2.64e-07!50;UBERON:0006238!2.64e-07!50|ontology_enrichment_uberon_v019_2=UBERON:0000956,3.81e-10,21;UBERON:0001869,3.81e-10,21;UBERON:0000203,3.81e-10,21;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0001954,3.21e-08,7;UBERON:0003022,3.21e-08,7;UBERON:0002421,3.21e-08,7;UBERON:0000349,3.21e-08,7;UBERON:0002600,3.21e-08,7;UBERON:0003528,1.84e-07,29;UBERON:0002791,1.84e-07,29;UBERON:0001893,1.84e-07,29|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,1.05798195854407,1.26766280701236,0,0,0,0,0,0,0,1.45165457231869,4.72520784160917,0.420649922702764,0,0.220868540951614,1.5923803897944,0.670918297127655,2.75765635983006,0,0.127687338085188,0,0.527545150920775,0.0914876436024097,0.52091337055676,0,0.56276261003168,0,0,0.854230084794618,0.372798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0,0,0,0.162241263067758,0,0,0,0,0.130120442962704,0,0.180062129805349,0.30140963567143,0,0,0.187403449119458,0,0.215567992932842,0.189106080167819,0,0.219195732427575,0.556094498451196,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445597348164788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.726511433089237,0,0.512200817262403,0,0.209613162627982,0,0,0,0,0,0,0,0,0,0,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192906610981141,0.249810577937946,0,0,0,0,0|short_description=p@chr12:28021078..28021088,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=100 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:28021078..28021088,+ | |||
|id=chr12:28021078..28021088,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.20e-24!23;CL:0000337!2.20e-24!23;CL:0000540!9.71e-18!33;CL:0000047!9.71e-18!33;CL:0000031!9.71e-18!33;CL:0000404!9.71e-18!33;CL:0000393!2.78e-14!39;CL:0000211!2.78e-14!39;CL:0002609!4.49e-14!6;CL:0002319!1.61e-12!43;CL:0000221!3.94e-12!44;CL:0000133!3.94e-12!44;CL:0000055!3.97e-10!50;CL:0002608!6.26e-08!3;CL:0000120!7.28e-08!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000120,3.72e-37,3;CL:0002609,4.28e-34,6;CL:0000117,1.06e-26,23;CL:0000337,1.06e-26,23;CL:0000540,1.03e-18,33;CL:0000047,1.03e-18,33;CL:0000031,1.03e-18,33;CL:0000404,1.03e-18,33;CL:0002608,7.36e-18,3;CL:0000393,7.07e-16,39;CL:0000211,7.07e-16,39;CL:0002319,2.01e-14,43;CL:0000221,4.23e-14,44;CL:0000133,4.23e-14,44;CL:0002321,6.38e-09,70;CL:0000723,7.08e-07,91;CL:0000048,7.08e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!3.07e-11!34;UBERON:0003056!4.56e-11!49;UBERON:0001017!2.75e-10!73;UBERON:0005743!2.75e-10!73;UBERON:0000073!7.34e-10!75;UBERON:0001016!7.34e-10!75;UBERON:0001049!2.62e-09!52;UBERON:0005068!2.62e-09!52;UBERON:0006241!2.62e-09!52;UBERON:0007135!2.62e-09!52;UBERON:0002780!3.54e-09!39;UBERON:0001890!3.54e-09!39;UBERON:0006240!3.54e-09!39;UBERON:0002346!3.63e-09!71;UBERON:0003075!3.63e-09!71;UBERON:0007284!3.63e-09!71;UBERON:0003080!7.38e-09!40;UBERON:0004121!7.83e-09!102;UBERON:0000924!7.83e-09!102;UBERON:0006601!7.83e-09!102;UBERON:0002791!1.60e-08!29;UBERON:0003528!1.60e-08!29;UBERON:0001893!1.60e-08!29;UBERON:0000033!1.65e-08!63;UBERON:0000153!7.22e-08!94;UBERON:0002616!1.58e-07!49;UBERON:0000955!2.64e-07!50;UBERON:0006238!2.64e-07!50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,3.81e-10,21;UBERON:0001869,3.81e-10,21;UBERON:0000203,3.81e-10,21;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0001954,3.21e-08,7;UBERON:0003022,3.21e-08,7;UBERON:0002421,3.21e-08,7;UBERON:0000349,3.21e-08,7;UBERON:0002600,3.21e-08,7;UBERON:0003528,1.84e-07,29;UBERON:0002791,1.84e-07,29;UBERON:0001893,1.84e-07,29 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,1.05798195854407,1.26766280701236,0,0,0,0,0,0,0,1.45165457231869,4.72520784160917,0.420649922702764,0,0.220868540951614,1.5923803897944,0.670918297127655,2.75765635983006,0,0.127687338085188,0,0.527545150920775,0.0914876436024097,0.52091337055676,0,0.56276261003168,0,0,0.854230084794618,0.372798891650601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0,0,0,0.162241263067758,0,0,0,0,0.130120442962704,0,0.180062129805349,0.30140963567143,0,0,0.187403449119458,0,0.215567992932842,0.189106080167819,0,0.219195732427575,0.556094498451196,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445597348164788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.726511433089237,0,0.512200817262403,0,0.209613162627982,0,0,0,0,0,0,0,0,0,0,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192906610981141,0.249810577937946,0,0,0,0,0 | |||
|short_description=p@chr12:28021078..28021088,+ | |||
}} |
Revision as of 22:38, 12 September 2013
Short description: | p@chr12:28021078..28021088, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:28021078..28021088, + |
Coexpression cluster: | MCL_coexpression_mm9:100 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granule cell | 3.72e-37 | 3 |
neuron of cerebral cortex | 4.28e-34 | 6 |
CNS neuron (sensu Vertebrata) | 1.06e-26 | 23 |
neuroblast (sensu Vertebrata) | 1.06e-26 | 23 |
neuron | 1.03e-18 | 33 |
neuronal stem cell | 1.03e-18 | 33 |
neuroblast | 1.03e-18 | 33 |
electrically signaling cell | 1.03e-18 | 33 |
hippocampal neuron | 7.36e-18 | 3 |
electrically responsive cell | 7.07e-16 | 39 |
electrically active cell | 7.07e-16 | 39 |
neural cell | 2.01e-14 | 43 |
ectodermal cell | 4.23e-14 | 44 |
neurectodermal cell | 4.23e-14 | 44 |
embryonic cell | 6.38e-09 | 70 |
somatic stem cell | 7.08e-07 | 91 |
multi fate stem cell | 7.08e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 3.81e-10 | 21 |
cerebral hemisphere | 3.81e-10 | 21 |
pallium | 3.81e-10 | 21 |
central nervous system | 1.47e-08 | 73 |
nervous system | 2.47e-08 | 75 |
Ammon's horn | 3.21e-08 | 7 |
lobe parts of cerebral cortex | 3.21e-08 | 7 |
hippocampal formation | 3.21e-08 | 7 |
limbic system | 3.21e-08 | 7 |
limbic lobe | 3.21e-08 | 7 |
brain grey matter | 1.84e-07 | 29 |
regional part of telencephalon | 1.84e-07 | 29 |
telencephalon | 1.84e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.