FFCP PHASE1:Mm9::chr10:22451142..22451191,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=237336|HGNC=|MCL_coexpression_id=13|UniProt=|association_with_transcript=0bp_to_ENSMUST00000138022_5end|description=CAGE_peak_2_at_Tbpl1_5end|id=chr10:22451142..22451191,-|ontology_enrichment_celltype=CL:0000117!1.50e-14!23;CL:0000337!1.50e-14!23;CL:0000540!1.88e-13!33;CL:0000047!1.88e-13!33;CL:0000031!1.88e-13!33;CL:0000404!1.88e-13!33;CL:0000393!2.64e-13!39;CL:0000211!2.64e-13!39;CL:0000221!2.28e-09!44;CL:0000133!2.28e-09!44;CL:0002319!3.89e-09!43;CL:0000055!1.21e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.50e-14,23;CL:0000337,1.50e-14,23;CL:0000540,1.88e-13,33;CL:0000047,1.88e-13,33;CL:0000031,1.88e-13,33;CL:0000404,1.88e-13,33;CL:0000393,2.64e-13,39;CL:0000211,2.64e-13,39;CL:0000221,2.28e-09,44;CL:0000133,2.28e-09,44;CL:0002319,3.89e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.85e-24!75;UBERON:0001016!1.85e-24!75;UBERON:0001017!1.89e-24!73;UBERON:0005743!1.89e-24!73;UBERON:0000033!5.16e-24!63;UBERON:0001049!6.88e-23!52;UBERON:0005068!6.88e-23!52;UBERON:0006241!6.88e-23!52;UBERON:0007135!6.88e-23!52;UBERON:0002346!2.81e-22!71;UBERON:0003075!2.81e-22!71;UBERON:0007284!2.81e-22!71;UBERON:0000955!3.88e-22!50;UBERON:0006238!3.88e-22!50;UBERON:0002616!1.15e-21!49;UBERON:0003056!2.46e-20!49;UBERON:0004121!2.11e-19!102;UBERON:0000924!2.11e-19!102;UBERON:0006601!2.11e-19!102;UBERON:0003080!1.79e-18!40;UBERON:0002780!6.67e-18!39;UBERON:0001890!6.67e-18!39;UBERON:0006240!6.67e-18!39;UBERON:0002020!5.56e-17!34;UBERON:0002791!2.37e-14!29;UBERON:0003528!2.37e-14!29;UBERON:0001893!2.37e-14!29;UBERON:0000153!7.26e-11!94;UBERON:0007811!1.81e-10!86;UBERON:0000956!1.68e-09!21;UBERON:0001869!1.68e-09!21;UBERON:0000203!1.68e-09!21;UBERON:0004111!3.00e-08!122;UBERON:0000025!7.60e-08!114;UBERON:0002619!2.51e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.35e-25,64;UBERON:0003075,2.35e-25,64;UBERON:0007284,2.35e-25,64;UBERON:0000073,1.59e-24,54;UBERON:0001016,1.85e-24,75;UBERON:0001017,1.89e-24,73;UBERON:0001049,6.88e-23,52;UBERON:0005068,6.88e-23,52;UBERON:0006241,6.88e-23,52;UBERON:0007135,6.88e-23,52;UBERON:0004121,2.68e-21,95;UBERON:0000924,2.68e-21,95;UBERON:0006601,2.68e-21,95;UBERON:0010371,2.43e-20,73;UBERON:0003056,2.46e-20,49;UBERON:0000955,4.17e-20,47;UBERON:0006238,4.17e-20,47;UBERON:0002616,1.21e-19,46;UBERON:0010314,8.84e-19,92;UBERON:0003080,1.78e-18,40;UBERON:0002780,6.67e-18,39;UBERON:0001890,6.67e-18,39;UBERON:0006240,6.67e-18,39;UBERON:0002020,5.56e-17,34;UBERON:0003528,2.37e-14,29;UBERON:0002791,2.37e-14,29;UBERON:0001893,2.37e-14,29;UBERON:0000956,1.68e-09,21;UBERON:0001869,1.68e-09,21;UBERON:0000203,1.68e-09,21;UBERON:0004111,2.99e-08,122;UBERON:0000025,7.58e-08,114;UBERON:0002619,2.51e-07,17|phase1_expression=13.7728008510123,3.48975407639361,0.909998478779072,4.83942738090928,2.00358291978539,2.35030980676646,2.80335168714631,4.39019299701359,2.53419699873,1.17032263160997,11.3003859028833,8.85470964848234,4.96482116800497,2.88487327982691,11.9919514253639,10.1237633694913,16.7894850750755,5.0473946457318,3.70208970735495,3.39511721438424,11.8210173309987,5.06383851124515,5.74639536105658,4.47978783821539,5.04700418347774,4.01962374880514,5.59990595006797,3.44753972297422,3.23039813075836,4.53654233567875,5.54326276638262,8.89042942843484,7.99584223859941,15.8481681015439,4.33277429626912,5.81821258754723,5.71674197534634,5.02237956884289,5.4693474116666,4.71171369576418,6.47054636834116,7.5135003345429,7.2826552954673,12.4637849795822,11.1514624341466,11.3798986340243,10.1710874765245,3.70642765846759,5.93152693383074,8.36048566019419,7.55926676776958,5.75010257459886,3.18786951509699,5.07753499407941,3.02484419228218,10.0331180054019,8.88253663810146,6.70373719960675,26.5034563726073,32.797440714866,31.0577387718028,4.40497891689872,8.89294796111139,4.04954872776629,0.988866362566974,3.5524005747305,6.89080254192331,4.2264013585371,20.9453016863125,19.1708432431001,23.5563956713548,18.2816630018434,17.8903518170807,21.0684174649721,20.9901581529938,17.4651569455904,30.8324466798288,23.3667828695894,22.2729473221553,33.4991170834692,33.6674528456868,42.1939830150976,22.0554569211091,18.0084035210138,22.1557459276375,24.1595440088408,15.6608848879013,24.791126294765,11.2074766133112,8.23730005163962,7.24661221754194,0.860423876981386,9.51959867190851,5.93673510801599,2.59910566979068,6.72040330646003,5.05599912474307,7.49893419343454,6.75443611967459,11.3068663843309,11.6900038414645,5.13305909657271,0,7.11066703153331,9.09262372247099,7.34743609877786,11.1215377903252,4.79572294820052,4.14300613835475,6.97678053604676,9.54169297213747,9.43842982767638,6.22661842591358,6.93324146542064,7.87844337809222,6.1576629751541,6.67426412882809,6.79616977523585,7.96149496754887,10.8383789464764,7.28777010919299,6.30337829075789,9.31958806090611,34.255353250351,34.5587066242201,5.8755122697976,7.54835284387298,4.19931911695385,6.86179226194549,20.8208988772704,21.0450277296568,23.6230181972185,22.94481026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| ||
|EntrezGene=237336 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000138022_5end | |||
|description=CAGE_peak_2_at_Tbpl1_5end | |||
|id=chr10:22451142..22451191,- | |||
|ontology_enrichment_celltype=CL:0000117!1.50e-14!23;CL:0000337!1.50e-14!23;CL:0000540!1.88e-13!33;CL:0000047!1.88e-13!33;CL:0000031!1.88e-13!33;CL:0000404!1.88e-13!33;CL:0000393!2.64e-13!39;CL:0000211!2.64e-13!39;CL:0000221!2.28e-09!44;CL:0000133!2.28e-09!44;CL:0002319!3.89e-09!43;CL:0000055!1.21e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.50e-14,23;CL:0000337,1.50e-14,23;CL:0000540,1.88e-13,33;CL:0000047,1.88e-13,33;CL:0000031,1.88e-13,33;CL:0000404,1.88e-13,33;CL:0000393,2.64e-13,39;CL:0000211,2.64e-13,39;CL:0000221,2.28e-09,44;CL:0000133,2.28e-09,44;CL:0002319,3.89e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.85e-24!75;UBERON:0001016!1.85e-24!75;UBERON:0001017!1.89e-24!73;UBERON:0005743!1.89e-24!73;UBERON:0000033!5.16e-24!63;UBERON:0001049!6.88e-23!52;UBERON:0005068!6.88e-23!52;UBERON:0006241!6.88e-23!52;UBERON:0007135!6.88e-23!52;UBERON:0002346!2.81e-22!71;UBERON:0003075!2.81e-22!71;UBERON:0007284!2.81e-22!71;UBERON:0000955!3.88e-22!50;UBERON:0006238!3.88e-22!50;UBERON:0002616!1.15e-21!49;UBERON:0003056!2.46e-20!49;UBERON:0004121!2.11e-19!102;UBERON:0000924!2.11e-19!102;UBERON:0006601!2.11e-19!102;UBERON:0003080!1.79e-18!40;UBERON:0002780!6.67e-18!39;UBERON:0001890!6.67e-18!39;UBERON:0006240!6.67e-18!39;UBERON:0002020!5.56e-17!34;UBERON:0002791!2.37e-14!29;UBERON:0003528!2.37e-14!29;UBERON:0001893!2.37e-14!29;UBERON:0000153!7.26e-11!94;UBERON:0007811!1.81e-10!86;UBERON:0000956!1.68e-09!21;UBERON:0001869!1.68e-09!21;UBERON:0000203!1.68e-09!21;UBERON:0004111!3.00e-08!122;UBERON:0000025!7.60e-08!114;UBERON:0002619!2.51e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.35e-25,64;UBERON:0003075,2.35e-25,64;UBERON:0007284,2.35e-25,64;UBERON:0000073,1.59e-24,54;UBERON:0001016,1.85e-24,75;UBERON:0001017,1.89e-24,73;UBERON:0001049,6.88e-23,52;UBERON:0005068,6.88e-23,52;UBERON:0006241,6.88e-23,52;UBERON:0007135,6.88e-23,52;UBERON:0004121,2.68e-21,95;UBERON:0000924,2.68e-21,95;UBERON:0006601,2.68e-21,95;UBERON:0010371,2.43e-20,73;UBERON:0003056,2.46e-20,49;UBERON:0000955,4.17e-20,47;UBERON:0006238,4.17e-20,47;UBERON:0002616,1.21e-19,46;UBERON:0010314,8.84e-19,92;UBERON:0003080,1.78e-18,40;UBERON:0002780,6.67e-18,39;UBERON:0001890,6.67e-18,39;UBERON:0006240,6.67e-18,39;UBERON:0002020,5.56e-17,34;UBERON:0003528,2.37e-14,29;UBERON:0002791,2.37e-14,29;UBERON:0001893,2.37e-14,29;UBERON:0000956,1.68e-09,21;UBERON:0001869,1.68e-09,21;UBERON:0000203,1.68e-09,21;UBERON:0004111,2.99e-08,122;UBERON:0000025,7.58e-08,114;UBERON:0002619,2.51e-07,17 | |||
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| |||
|short_description=p2@Tbpl1 | |||
}} |
Revision as of 16:27, 12 September 2013
Short description: | p2@Tbpl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tbpl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000138022_5end |
EntrezGene: | Tbpl1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.50e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.50e-14 | 23 |
neuron | 1.88e-13 | 33 |
neuronal stem cell | 1.88e-13 | 33 |
neuroblast | 1.88e-13 | 33 |
electrically signaling cell | 1.88e-13 | 33 |
electrically responsive cell | 2.64e-13 | 39 |
electrically active cell | 2.64e-13 | 39 |
ectodermal cell | 2.28e-09 | 44 |
neurectodermal cell | 2.28e-09 | 44 |
neural cell | 3.89e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.35e-25 | 64 |
neural plate | 2.35e-25 | 64 |
presumptive neural plate | 2.35e-25 | 64 |
regional part of nervous system | 1.59e-24 | 54 |
nervous system | 1.85e-24 | 75 |
central nervous system | 1.89e-24 | 73 |
neural tube | 6.88e-23 | 52 |
neural rod | 6.88e-23 | 52 |
future spinal cord | 6.88e-23 | 52 |
neural keel | 6.88e-23 | 52 |
ectoderm-derived structure | 2.68e-21 | 95 |
ectoderm | 2.68e-21 | 95 |
presumptive ectoderm | 2.68e-21 | 95 |
ecto-epithelium | 2.43e-20 | 73 |
pre-chordal neural plate | 2.46e-20 | 49 |
brain | 4.17e-20 | 47 |
future brain | 4.17e-20 | 47 |
regional part of brain | 1.21e-19 | 46 |
structure with developmental contribution from neural crest | 8.84e-19 | 92 |
anterior neural tube | 1.78e-18 | 40 |
regional part of forebrain | 6.67e-18 | 39 |
forebrain | 6.67e-18 | 39 |
future forebrain | 6.67e-18 | 39 |
gray matter | 5.56e-17 | 34 |
brain grey matter | 2.37e-14 | 29 |
regional part of telencephalon | 2.37e-14 | 29 |
telencephalon | 2.37e-14 | 29 |
cerebral cortex | 1.68e-09 | 21 |
cerebral hemisphere | 1.68e-09 | 21 |
pallium | 1.68e-09 | 21 |
anatomical conduit | 2.99e-08 | 122 |
tube | 7.58e-08 | 114 |
regional part of cerebral cortex | 2.51e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.