FFCP PHASE1:Mm9::chr10:127103950..127103993,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=17937|HGNC=|UniProt=Q61127|association_with_transcript=-184bp_to_ENSMUST00000026469_5end|description=CAGE_peak_4_at_Nab2_5end|id=chr10:127103950..127103993,-|ontology_enrichment_celltype=CL:0000791!3.91e-07!9;CL:0000789!3.91e-07!9;CL:0002420!3.91e-07!9;CL:0002419!3.91e-07!9;CL:0000790!3.91e-07!9;CL:0002031!6.99e-07!25;CL:0000988!9.94e-07!32;CL:0002032!9.94e-07!32;CL:0000037!9.94e-07!32;CL:0000566!9.94e-07!32;CL:0000837!9.94e-07!32|ontology_enrichment_celltype_v019_2=CL:0002031,3.07e-12,25;CL:0002320,1.17e-11,46;CL:0000134,1.17e-11,46;CL:0000988,3.36e-11,32;CL:0002032,3.36e-11,32;CL:0000037,3.36e-11,32;CL:0000837,3.36e-11,32;CL:0000791,8.44e-11,9;CL:0000789,8.44e-11,9;CL:0002420,8.44e-11,9;CL:0002419,8.44e-11,9;CL:0000790,8.44e-11,9;CL:0000624,1.04e-09,8;CL:0000838,2.20e-09,12;CL:0000738,2.45e-09,17;CL:0002087,2.45e-09,17;CL:0000219,1.36e-08,54;CL:0000542,2.11e-08,13;CL:0000051,2.11e-08,13;CL:0000084,2.72e-08,11;CL:0000827,2.72e-08,11;CL:0000893,1.05e-07,6;CL:0002489,1.05e-07,6;CL:0000898,1.05e-07,6;CL:0000809,1.05e-07,6;CL:0000810,1.05e-07,6;CL:0000895,1.05e-07,6;CL:0000808,1.05e-07,6;CL:0000894,1.05e-07,6;CL:0000806,1.05e-07,6;CL:0000807,1.05e-07,6;CL:0000805,1.05e-07,6;CL:0002425,1.05e-07,6;CL:0002436,1.05e-07,6;CL:0002427,1.05e-07,6;CL:0002428,1.05e-07,6;CL:0002429,1.05e-07,6;CL:0002433,1.05e-07,6;CL:0002431,1.05e-07,6;CL:0002432,1.05e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.17e-11,46;UBERON:0002021,4.43e-08,10;UBERON:0000411,4.43e-08,10;UBERON:0001950,4.43e-08,10;UBERON:0002390,9.04e-08,45;UBERON:0003061,9.04e-08,45;UBERON:0002193,7.73e-07,48;UBERON:0002405,7.73e-07,48|phase1_expression=0.160148847104794,0,0,0.60492842261366,0.500895729946347,0,0.934450562382103,3.87369970324729,8.869689495555,8.19225842126977,8.38968044304974,8.69516533049167,2.56801094896809,3.75907730401689,1.66554880907831,0.404950534779652,0,4.25873923233621,4.66189074259512,1.69755860719212,0.765389611359628,0.297872853602656,0,0.47997726838022,0.22940928106717,0,0.430761996159075,0,0,0,0.221730510655305,3.17515336729816,1.84519436275371,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,2.26614272356039,2.93993100536592,0.917733760808408,0.782391344348039,0.218025156380447,0.439372365468944,0.194429899074283,0.839918529752175,0,14.2615215149076,7.97898356212479,7.39406358113421,0.771778308107841,1.14613375975503,0,0,0,0,1.35537812827653,1.77858959222228,2.2497492932035,1.97773272513395,2.1314403448383,1.79760066311043,1.15265491596466,0.311068836925433,0.135005938331691,0.210324961351382,0.571301968807607,0.441737081903227,0,0.670918297127655,0,0,0.510749352340751,0.921639199537461,0.131886287730194,0,0,0.837548997004143,0.56276261003168,1.37518422999129,0.294628585473668,0.284743361598206,0,0.908714319998209,0.604572480854284,0.869593466105033,0,0,0,0,0,0.983110940922263,1.53387290320252,1.81850203222008,0.35333957451034,4.50698943285378,1.28326477414318,0,7.11066703153331,0.216491041011214,1.01343946190039,0.505524445014783,0.34255163915718,0.517875767294343,0.890652834388949,0.346970653532272,0.608930956624282,0.230615497256059,0.301445281105245,0.23517741427141,0.376999773989026,0.494389935468748,0.289198713839823,0,0.647067399789637,0.883366073841574,0,0,5.5628351432194,5.23616767033638,0.510914110417183,1.55759661857696,0,1.39777249780371,1.19832511523858,3.66000482254901,0.628271760564322,3.12883776346098,2.55715457330331,1.87009240103604,0.811206315338788,0.611036183101898,0.995255764880744,3.79084137650512,0.420883711772948,0.130120442962704,0.459804208866946,0,0.753524089178575,0.544291993210623,1.15302348256365,0.937017245597288,0.258703370739016,1.07783996466421,1.13463648100692,1.23165786914764,0.657587197282725,0.556094498451196,1.39300866608867,1.02891068203972,0.59710280045548,1.40442637462647,0.772043721344145,0.568326998791185,0.621377317606506,0.234526059981096,0.36012412292203,1.42046841351126,0.590292695242212,0.617068451549513,0.465067889500816,0.536546802799238,0.350296027101508,0.493679549740441,0.32833492815819,0.243206428637567,1.02339991197733,0.658650345873152,0.268412837520744,2.3131894342054,0.411618449517138,0.330418782983798,0.528901133327089,0.426576501070468,0.464473343720877,0.128867461322093,0.605050573870028,0.22237804384487,0.380451252225118,0.474529061544512,0.164698954724011,0.251335208800269,0.198956472041151,0.19496408711912,0.898819408654221,0.432276099749388,0.398282546508734,0.189667900953082,0.685491075658373,0,0,0.193952487167626,0.561086559122548,0.316182685621286,0.295220295959204,0,0.246794327843601,0,0,0,0,0.202860121388503,0.482354319504834,0,0.575392274901621,0,0.274561413188081,4.31304619582064,0.372140947668503,0.312037673114561,0.757736633841335,0.179397413521912,0.482443521363367,1.29327233116623,0,0.814824882210129,0.339490171550376,0.469380496577004,1.34005005953453,0.238043640886014,1.36593553500459,0.630540576424764,0.664394068946325,0.63781907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| ||
|EntrezGene=17937 | |||
|HGNC= | |||
|UniProt=Q61127 | |||
|association_with_transcript=-184bp_to_ENSMUST00000026469_5end | |||
|description=CAGE_peak_4_at_Nab2_5end | |||
|id=chr10:127103950..127103993,- | |||
|ontology_enrichment_celltype=CL:0000791!3.91e-07!9;CL:0000789!3.91e-07!9;CL:0002420!3.91e-07!9;CL:0002419!3.91e-07!9;CL:0000790!3.91e-07!9;CL:0002031!6.99e-07!25;CL:0000988!9.94e-07!32;CL:0002032!9.94e-07!32;CL:0000037!9.94e-07!32;CL:0000566!9.94e-07!32;CL:0000837!9.94e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,3.07e-12,25;CL:0002320,1.17e-11,46;CL:0000134,1.17e-11,46;CL:0000988,3.36e-11,32;CL:0002032,3.36e-11,32;CL:0000037,3.36e-11,32;CL:0000837,3.36e-11,32;CL:0000791,8.44e-11,9;CL:0000789,8.44e-11,9;CL:0002420,8.44e-11,9;CL:0002419,8.44e-11,9;CL:0000790,8.44e-11,9;CL:0000624,1.04e-09,8;CL:0000838,2.20e-09,12;CL:0000738,2.45e-09,17;CL:0002087,2.45e-09,17;CL:0000219,1.36e-08,54;CL:0000542,2.11e-08,13;CL:0000051,2.11e-08,13;CL:0000084,2.72e-08,11;CL:0000827,2.72e-08,11;CL:0000893,1.05e-07,6;CL:0002489,1.05e-07,6;CL:0000898,1.05e-07,6;CL:0000809,1.05e-07,6;CL:0000810,1.05e-07,6;CL:0000895,1.05e-07,6;CL:0000808,1.05e-07,6;CL:0000894,1.05e-07,6;CL:0000806,1.05e-07,6;CL:0000807,1.05e-07,6;CL:0000805,1.05e-07,6;CL:0002425,1.05e-07,6;CL:0002436,1.05e-07,6;CL:0002427,1.05e-07,6;CL:0002428,1.05e-07,6;CL:0002429,1.05e-07,6;CL:0002433,1.05e-07,6;CL:0002431,1.05e-07,6;CL:0002432,1.05e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.17e-11,46;UBERON:0002021,4.43e-08,10;UBERON:0000411,4.43e-08,10;UBERON:0001950,4.43e-08,10;UBERON:0002390,9.04e-08,45;UBERON:0003061,9.04e-08,45;UBERON:0002193,7.73e-07,48;UBERON:0002405,7.73e-07,48 | |||
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| |||
|short_description=p4@Nab2 | |||
}} | |||
Revision as of 16:04, 12 September 2013
| Short description: | p4@Nab2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Nab2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -184bp_to_ENSMUST00000026469_5end |
| EntrezGene: | Nab2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| connective tissue | 1.17e-11 | 46 |
| occipital lobe | 4.43e-08 | 10 |
| visual cortex | 4.43e-08 | 10 |
| neocortex | 4.43e-08 | 10 |
| hematopoietic system | 9.04e-08 | 45 |
| blood island | 9.04e-08 | 45 |
| hemolymphoid system | 7.73e-07 | 48 |
| immune system | 7.73e-07 | 48 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
