FFCP PHASE1:Mm9::chr12:112615997..112616010,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=217866|HGNC=|MCL_coexpression_id=459|UniProt=Q7TT50,B2RQQ7|association_with_transcript=-68bp_to_ENSMUST00000041965,NM_183016,uc007pct.2_5end|description=CAGE_peak_6_at_Cdc42bpb_5end|id=chr12:112615997..112616010,-|ontology_enrichment_celltype=CL:0000117!2.42e-07!23;CL:0000337!2.42e-07!23|ontology_enrichment_celltype_v019_2=CL:0002609,4.53e-20,6;CL:0000117,1.70e-12,23;CL:0000337,1.70e-12,23;CL:0002608,7.72e-11,3;CL:0000540,3.79e-08,33;CL:0000047,3.79e-08,33;CL:0000031,3.79e-08,33;CL:0000404,3.79e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.90e-10!34;UBERON:0003056!8.83e-10!49;UBERON:0002791!1.05e-09!29;UBERON:0003528!1.05e-09!29;UBERON:0001893!1.05e-09!29;UBERON:0003080!2.30e-09!40;UBERON:0002780!2.59e-09!39;UBERON:0001890!2.59e-09!39;UBERON:0006240!2.59e-09!39;UBERON:0001049!2.33e-08!52;UBERON:0005068!2.33e-08!52;UBERON:0006241!2.33e-08!52;UBERON:0007135!2.33e-08!52;UBERON:0000956!5.00e-08!21;UBERON:0001869!5.00e-08!21;UBERON:0000203!5.00e-08!21;UBERON:0000033!1.37e-07!63;UBERON:0000955!1.67e-07!50;UBERON:0006238!1.67e-07!50;UBERON:0002616!2.16e-07!49;UBERON:0002346!8.03e-07!71;UBERON:0003075!8.03e-07!71;UBERON:0007284!8.03e-07!71|ontology_enrichment_uberon_v019_2=UBERON:0003528,6.01e-29,29;UBERON:0002791,6.01e-29,29;UBERON:0001893,6.01e-29,29;UBERON:0000956,9.64e-28,21;UBERON:0001869,9.64e-28,21;UBERON:0000203,9.64e-28,21;UBERON:0002020,2.52e-27,34;UBERON:0002780,1.32e-20,39;UBERON:0001890,1.32e-20,39;UBERON:0006240,1.32e-20,39;UBERON:0003080,5.31e-20,40;UBERON:0002619,2.08e-17,17;UBERON:0002616,6.35e-17,46;UBERON:0001049,1.48e-16,52;UBERON:0005068,1.48e-16,52;UBERON:0006241,1.48e-16,52;UBERON:0007135,1.48e-16,52;UBERON:0000955,1.74e-16,47;UBERON:0006238,1.74e-16,47;UBERON:0000073,8.41e-16,54;UBERON:0003056,1.15e-15,49;UBERON:0002346,9.70e-13,64;UBERON:0003075,9.70e-13,64;UBERON:0007284,9.70e-13,64;UBERON:0001017,3.54e-12,73;UBERON:0001016,9.54e-12,75;UBERON:0002021,8.23e-11,10;UBERON:0000411,8.23e-11,10;UBERON:0001950,8.23e-11,10;UBERON:0010371,1.06e-10,73;UBERON:0004121,1.95e-08,95;UBERON:0000924,1.95e-08,95;UBERON:0006601,1.95e-08,95;UBERON:0001954,5.23e-08,7;UBERON:0003022,5.23e-08,7;UBERON:0002421,5.23e-08,7;UBERON:0000349,5.23e-08,7;UBERON:0002600,5.23e-08,7;UBERON:0010314,1.02e-07,92|phase1_expression=0.480446541314382,0.697950815278722,0.909998478779072,0,1.00179145989269,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.255129870453209,0,0,0,0.22940928106717,0,0,0.430942465371778,0.190023419456374,0.504060259519861,0,0,0,0,0.288851619751275,0,0.204169356262369,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0,0.218025156380447,0,0,0,0,0,0,0,0,0.286533439938757,0,2.02316460859598,0.528990979272033,0.633831403506179,0.338844532069132,0,0,0,0,0,0.384218305321555,3.11068836925433,3.24014251996058,2.94454945891935,0.285650984403804,0.662605622854841,2.32732518508413,2.58782771749238,4.5960939330501,0,0.383062014255563,0.307213066512487,1.71452174049252,1.00636407962651,0.52091337055676,0.558365998002762,0,0.15279824777681,0,0.854230084794618,1.86399445825301,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0.29688427812965,0.346970653532272,0,0,0.150722640552623,0,0,0,0,0,0.323533699894818,0.220841518460394,0,1.86391761218122,0.878342391034642,0,0,0.11981512450592,0,0,0.299581278809645,0.457500602818626,7.91622418311046,1.21677024134594,0.511430914660661,0,0.324482526135515,0.305518091550949,0,0,0,0.390361328888111,0.689706313300419,0.360124259610698,0.30140963567143,0.272145996605311,0.512454881139399,0.749613796477831,0,0.431135985865684,0.567318240503458,0.351902248327898,0,0.556094498451196,1.0447564995665,0.411564272815887,0.59710280045548,0,0,0,0,0.469052119962192,0.720248245844059,0.473489471170421,0.393528463494808,0.771335564436891,0.697601834251224,0,0.116765342367169,0.16455984991348,0.164167464079095,0.486412857275134,0.146199987425332,0.439100230582101,0.134206418760372,0.841159794256509,3.60166143327496,0.330418782983798,0.264450566663544,0.426576501070468,0.928946687441754,0.128867461322093,0.605050573870028,0.667134131534611,0.380451252225118,0.474529061544512,0.164698954724011,0.251335208800269,0.198956472041151,0,0,0,0,0.758671603812327,0.114248512609729,0,0.407302655690628,0,0.350679099451593,0.316182685621286,0.295220295959204,0.31399745568275,0,0,0,0.196558995113203,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.369506380333209,0.947457058852424,0.162964976442026,0.169745085775188,0.234690248288502,0.167506257441816,0.238043640886014,0.390267295715598,0.315270288212382,0.221464689648775,0.478364305972461,0.491589944147214,0.518054945597687,0.289298117163023,0,0,0,0,0,0,0.163934945376675,0,0.315508219416257,0,0,0,0,0.283076530788832,0,0,0.395287777946524,0.321321316421807,0.141940085208269,0.534196811001766,0.325773918707152,0.329940245945071,0,0.485561272309963,0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| ||
|EntrezGene=217866 | |||
|HGNC= | |||
|MCL_coexpression_id=459 | |||
|UniProt=Q7TT50,B2RQQ7 | |||
|association_with_transcript=-68bp_to_ENSMUST00000041965,NM_183016,uc007pct.2_5end | |||
|description=CAGE_peak_6_at_Cdc42bpb_5end | |||
|id=chr12:112615997..112616010,- | |||
|ontology_enrichment_celltype=CL:0000117!2.42e-07!23;CL:0000337!2.42e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,4.53e-20,6;CL:0000117,1.70e-12,23;CL:0000337,1.70e-12,23;CL:0002608,7.72e-11,3;CL:0000540,3.79e-08,33;CL:0000047,3.79e-08,33;CL:0000031,3.79e-08,33;CL:0000404,3.79e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.90e-10!34;UBERON:0003056!8.83e-10!49;UBERON:0002791!1.05e-09!29;UBERON:0003528!1.05e-09!29;UBERON:0001893!1.05e-09!29;UBERON:0003080!2.30e-09!40;UBERON:0002780!2.59e-09!39;UBERON:0001890!2.59e-09!39;UBERON:0006240!2.59e-09!39;UBERON:0001049!2.33e-08!52;UBERON:0005068!2.33e-08!52;UBERON:0006241!2.33e-08!52;UBERON:0007135!2.33e-08!52;UBERON:0000956!5.00e-08!21;UBERON:0001869!5.00e-08!21;UBERON:0000203!5.00e-08!21;UBERON:0000033!1.37e-07!63;UBERON:0000955!1.67e-07!50;UBERON:0006238!1.67e-07!50;UBERON:0002616!2.16e-07!49;UBERON:0002346!8.03e-07!71;UBERON:0003075!8.03e-07!71;UBERON:0007284!8.03e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,6.01e-29,29;UBERON:0002791,6.01e-29,29;UBERON:0001893,6.01e-29,29;UBERON:0000956,9.64e-28,21;UBERON:0001869,9.64e-28,21;UBERON:0000203,9.64e-28,21;UBERON:0002020,2.52e-27,34;UBERON:0002780,1.32e-20,39;UBERON:0001890,1.32e-20,39;UBERON:0006240,1.32e-20,39;UBERON:0003080,5.31e-20,40;UBERON:0002619,2.08e-17,17;UBERON:0002616,6.35e-17,46;UBERON:0001049,1.48e-16,52;UBERON:0005068,1.48e-16,52;UBERON:0006241,1.48e-16,52;UBERON:0007135,1.48e-16,52;UBERON:0000955,1.74e-16,47;UBERON:0006238,1.74e-16,47;UBERON:0000073,8.41e-16,54;UBERON:0003056,1.15e-15,49;UBERON:0002346,9.70e-13,64;UBERON:0003075,9.70e-13,64;UBERON:0007284,9.70e-13,64;UBERON:0001017,3.54e-12,73;UBERON:0001016,9.54e-12,75;UBERON:0002021,8.23e-11,10;UBERON:0000411,8.23e-11,10;UBERON:0001950,8.23e-11,10;UBERON:0010371,1.06e-10,73;UBERON:0004121,1.95e-08,95;UBERON:0000924,1.95e-08,95;UBERON:0006601,1.95e-08,95;UBERON:0001954,5.23e-08,7;UBERON:0003022,5.23e-08,7;UBERON:0002421,5.23e-08,7;UBERON:0000349,5.23e-08,7;UBERON:0002600,5.23e-08,7;UBERON:0010314,1.02e-07,92 | |||
|phase1_expression=0.480446541314382,0.697950815278722,0.909998478779072,0,1.00179145989269,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0.255129870453209,0,0,0,0.22940928106717,0,0,0.430942465371778,0.190023419456374,0.504060259519861,0,0,0,0,0.288851619751275,0,0.204169356262369,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0,0.218025156380447,0,0,0,0,0,0,0,0,0.286533439938757,0,2.02316460859598,0.528990979272033,0.633831403506179,0.338844532069132,0,0,0,0,0,0.384218305321555,3.11068836925433,3.24014251996058,2.94454945891935,0.285650984403804,0.662605622854841,2.32732518508413,2.58782771749238,4.5960939330501,0,0.383062014255563,0.307213066512487,1.71452174049252,1.00636407962651,0.52091337055676,0.558365998002762,0,0.15279824777681,0,0.854230084794618,1.86399445825301,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0.29688427812965,0.346970653532272,0,0,0.150722640552623,0,0,0,0,0,0.323533699894818,0.220841518460394,0,1.86391761218122,0.878342391034642,0,0,0.11981512450592,0,0,0.299581278809645,0.457500602818626,7.91622418311046,1.21677024134594,0.511430914660661,0,0.324482526135515,0.305518091550949,0,0,0,0.390361328888111,0.689706313300419,0.360124259610698,0.30140963567143,0.272145996605311,0.512454881139399,0.749613796477831,0,0.431135985865684,0.567318240503458,0.351902248327898,0,0.556094498451196,1.0447564995665,0.411564272815887,0.59710280045548,0,0,0,0,0.469052119962192,0.720248245844059,0.473489471170421,0.393528463494808,0.771335564436891,0.697601834251224,0,0.116765342367169,0.16455984991348,0.164167464079095,0.486412857275134,0.146199987425332,0.439100230582101,0.134206418760372,0.841159794256509,3.60166143327496,0.330418782983798,0.264450566663544,0.426576501070468,0.928946687441754,0.128867461322093,0.605050573870028,0.667134131534611,0.380451252225118,0.474529061544512,0.164698954724011,0.251335208800269,0.198956472041151,0,0,0,0,0.758671603812327,0.114248512609729,0,0.407302655690628,0,0.350679099451593,0.316182685621286,0.295220295959204,0.31399745568275,0,0,0,0.196558995113203,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.369506380333209,0.947457058852424,0.162964976442026,0.169745085775188,0.234690248288502,0.167506257441816,0.238043640886014,0.390267295715598,0.315270288212382,0.221464689648775,0.478364305972461,0.491589944147214,0.518054945597687,0.289298117163023,0,0,0,0,0,0,0.163934945376675,0,0.315508219416257,0,0,0,0,0.283076530788832,0,0,0.395287777946524,0.321321316421807,0.141940085208269,0.534196811001766,0.325773918707152,0.329940245945071,0,0.485561272309963,0.302323556964751,0.188605079755898,0.295301892880773,0,0,0.363533729477506,0,0,0,0,0,0.900305470156551,0.517434735131018,0,0.886701168211368,0.178368817602071,0.658196082408484,0.304464949114599,0.23467170806371,0,0,0,0.161464426695906,0.241251699712623,0,0,0,0.18542530201051,0.170870880797853,0.412773735926445,0.185194527369712,0,0,0,0,0,0,0,0,1.21991680276109,0.432021363287205,0.209088296014469,0,0.134864346384821,0.165306911450672,0.26175594198403,0.259229946583586,0,0,0.299033092087958,0.496375471371293,1.36115831840833,1.03327858782185,0.506868376472335,0.352071715937262,0.13020438484395,0.734015410979976,0.241584120826006,0.576060012515731,0,0.202725215290164,0.410843828659309,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0,0.443971906748129,0.358855426437903,0,0.19318959403219,0.375364950902364,0,0.214368379079066,0,3.3885110557024,1.84130094602871,1.14579102687879,1.20297227640581,2.05524755931193,0.755393897389701,1.35004500046361,0,0.453142408984205,0,0.207574695168353,0.798049746802062,1.02440163452481,0,1.25767897576789,0.183843508450014,0,0.618105171716683,0,1.01078884705519,0,0.377252682772152,0.561849044819294,0.512201219238954,0.287177344778066,0.952587382566147,0.115884325944855,0.77163688185482,0.412085900803307,0.294397840268795,0.685738504770831,0.354951612318675,0.238436189947321,0.290692833264657,0.470546902076653,0.507687647350059,0.548783918618318,0,0.407412341537585,0,0.355905054372522,0.788035859004508,1.22769312950907,0.929621047115796,0.578719832943424,0.999242311751784,0.467863216890817,0,0,0,0 | |||
|short_description=p6@Cdc42bpb | |||
}} |
Revision as of 22:18, 12 September 2013
Short description: | p6@Cdc42bpb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Cdc42bpb_5end |
Coexpression cluster: | MCL_coexpression_mm9:459 |
Association with transcript: | -68bp_to_ENSMUST00000041965, NM_183016, uc007pct.2_5end |
EntrezGene: | Cdc42bpb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 4.53e-20 | 6 |
CNS neuron (sensu Vertebrata) | 1.70e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.70e-12 | 23 |
hippocampal neuron | 7.72e-11 | 3 |
neuron | 3.79e-08 | 33 |
neuronal stem cell | 3.79e-08 | 33 |
neuroblast | 3.79e-08 | 33 |
electrically signaling cell | 3.79e-08 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.