FFCP PHASE1:Mm9::chr12:33832620..33832635,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=380753|HGNC=|MCL_coexpression_id=60|UniProt=F6X2K7|association_with_transcript=0bp_to_ENSMUST00000125192_5end|description=CAGE_peak_4_at_Atxn7l1_5end|id=chr12:33832620..33832635,+|ontology_enrichment_celltype=CL:0000117!1.03e-07!23;CL:0000337!1.03e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,9.29e-08,23;CL:0000337,9.29e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.01e-13!52;UBERON:0005068!2.01e-13!52;UBERON:0006241!2.01e-13!52;UBERON:0007135!2.01e-13!52;UBERON:0000955!2.06e-13!50;UBERON:0006238!2.06e-13!50;UBERON:0002616!8.47e-13!49;UBERON:0002020!2.97e-12!34;UBERON:0002791!1.12e-10!29;UBERON:0003528!1.12e-10!29;UBERON:0001893!1.12e-10!29;UBERON:0003080!1.60e-10!40;UBERON:0002780!5.84e-10!39;UBERON:0001890!5.84e-10!39;UBERON:0006240!5.84e-10!39;UBERON:0000033!9.34e-10!63;UBERON:0001017!1.25e-08!73;UBERON:0005743!1.25e-08!73;UBERON:0003056!2.01e-08!49;UBERON:0000073!3.91e-08!75;UBERON:0001016!3.91e-08!75;UBERON:0000153!1.57e-07!94;UBERON:0002346!1.77e-07!71;UBERON:0003075!1.77e-07!71;UBERON:0007284!1.77e-07!71;UBERON:0002021!3.01e-07!10;UBERON:0000411!3.01e-07!10;UBERON:0001950!3.01e-07!10;UBERON:0000025!5.12e-07!114;UBERON:0000956!5.36e-07!21;UBERON:0001869!5.36e-07!21;UBERON:0000203!5.36e-07!21;UBERON:0007811!7.91e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.25e-14,54;UBERON:0001049,1.41e-13,52;UBERON:0005068,1.41e-13,52;UBERON:0006241,1.41e-13,52;UBERON:0007135,1.41e-13,52;UBERON:0002020,2.48e-12,34;UBERON:0000955,6.59e-12,47;UBERON:0006238,6.59e-12,47;UBERON:0002616,2.60e-11,46;UBERON:0003528,9.57e-11,29;UBERON:0002791,9.57e-11,29;UBERON:0001893,9.57e-11,29;UBERON:0003080,1.57e-10,40;UBERON:0002780,5.76e-10,39;UBERON:0001890,5.76e-10,39;UBERON:0006240,5.76e-10,39;UBERON:0002346,9.70e-10,64;UBERON:0003075,9.70e-10,64;UBERON:0007284,9.70e-10,64;UBERON:0010371,1.02e-09,73;UBERON:0001017,1.40e-08,73;UBERON:0003056,2.50e-08,49;UBERON:0001016,4.34e-08,75;UBERON:0004121,1.35e-07,95;UBERON:0000924,1.35e-07,95;UBERON:0006601,1.35e-07,95;UBERON:0002021,2.73e-07,10;UBERON:0000411,2.73e-07,10;UBERON:0001950,2.73e-07,10;UBERON:0000956,4.89e-07,21;UBERON:0001869,4.89e-07,21;UBERON:0000203,4.89e-07,21;UBERON:0000025,5.02e-07,114|phase1_expression=0.960893082628764,0.697950815278722,1.36499771816861,1.81478526784098,0,1.51091344720701,1.86890112476421,0.903863264091034,1.12630977721333,1.17032263160997,0.34243593645101,0.558405112967355,1.02720437958723,1.04904482902797,2.6648780945253,0.404950534779652,0,1.57731082679119,1.7824876368746,0.84877930359606,6.54833334163237,1.68794617041505,0.783599367416806,1.27993938234725,1.83527424853736,0.57423196411502,1.7230479846363,1.50829862880122,0.190023419456374,0.252030129759931,1.10865255327652,1.27006134691926,0.61506478758457,0,0,0.498703936075477,0.612508068787107,0.837063261473815,0.7813353445238,1.0470474879476,0,1.36609096991689,0,3.14742044938943,2.43304634926835,6.24058957349717,0,1.52617609466313,1.5378032791413,1.36100929351998,0.55994568650145,1.43752564364972,0.671130424230945,2.17608642603403,0.672187598284928,5.14518872071894,2.86533439938757,1.54701627683233,4.04632921719196,3.1739458756322,5.07065122804943,1.0165335962074,0.889294796111139,1.7997994345628,0,2.1314403448383,0.599200221036809,0.768436610643109,2.48855069540346,2.43010688997043,3.15487442027073,3.99911378165325,2.42955395046775,2.20483438586917,1.72521847832825,2.75765635983006,12.1127469099328,6.76742891851495,9.21639199537461,5.01167893374737,4.29991924931325,3.12548022334056,6.14202597803038,9.00420176050688,7.33431589328689,5.00868595305235,4.12877874317399,4.65998614563251,1.66597625333005,1.28471652181535,2.02905142091174,0.860423876981386,0,1.61910957491345,0,1.34408066129201,2.24711072210803,2.89731548382698,3.11743205523443,3.18005617059306,1.69012103732017,2.56652954828636,0,7.11066703153331,0.216491041011214,0.760079596425296,1.01104889002957,1.48439043634778,13.4647699496529,2.3750742250372,0.867426633830679,0.304465478312141,1.15307748628029,1.65794904607885,1.76383060703557,0.628332956648377,5.43828929015623,6.36237170447611,2.65383165584962,0.970601099684455,1.98757366614354,3.39412677194655,0,6.14839673724249,5.44561437714983,1.78819938646014,0.718890747035522,0,0.508280908292259,11.3840885947665,13.7250180845588,7.66491547888473,12.8629996942285,8.95004100656157,8.93488591606108,11.0324058886075,0.81471491080253,1.24406970610093,1.26361379216837,3.57751155007006,1.56144531555244,1.14951052216736,0.900310649026746,1.50704817835715,1.7009124787832,1.7935920839879,1.78033276663485,3.10444044886819,3.44908788692548,2.83659120251729,1.93546236580344,1.7535658594206,1.66828349535359,3.48252166522167,1.85203922767149,2.18937693500343,1.40442637462647,1.28673953557358,1.13665399758237,2.07125772535502,1.40715635988658,0.540186184383045,2.60419209143731,1.37734962223183,1.3884040159864,0.697601834251224,2.68273401399619,1.05088808130453,2.30383789878873,1.31333971263276,1.7835138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| ||
|EntrezGene=380753 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=F6X2K7 | |||
|association_with_transcript=0bp_to_ENSMUST00000125192_5end | |||
|description=CAGE_peak_4_at_Atxn7l1_5end | |||
|id=chr12:33832620..33832635,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.03e-07!23;CL:0000337!1.03e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.29e-08,23;CL:0000337,9.29e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.01e-13!52;UBERON:0005068!2.01e-13!52;UBERON:0006241!2.01e-13!52;UBERON:0007135!2.01e-13!52;UBERON:0000955!2.06e-13!50;UBERON:0006238!2.06e-13!50;UBERON:0002616!8.47e-13!49;UBERON:0002020!2.97e-12!34;UBERON:0002791!1.12e-10!29;UBERON:0003528!1.12e-10!29;UBERON:0001893!1.12e-10!29;UBERON:0003080!1.60e-10!40;UBERON:0002780!5.84e-10!39;UBERON:0001890!5.84e-10!39;UBERON:0006240!5.84e-10!39;UBERON:0000033!9.34e-10!63;UBERON:0001017!1.25e-08!73;UBERON:0005743!1.25e-08!73;UBERON:0003056!2.01e-08!49;UBERON:0000073!3.91e-08!75;UBERON:0001016!3.91e-08!75;UBERON:0000153!1.57e-07!94;UBERON:0002346!1.77e-07!71;UBERON:0003075!1.77e-07!71;UBERON:0007284!1.77e-07!71;UBERON:0002021!3.01e-07!10;UBERON:0000411!3.01e-07!10;UBERON:0001950!3.01e-07!10;UBERON:0000025!5.12e-07!114;UBERON:0000956!5.36e-07!21;UBERON:0001869!5.36e-07!21;UBERON:0000203!5.36e-07!21;UBERON:0007811!7.91e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.25e-14,54;UBERON:0001049,1.41e-13,52;UBERON:0005068,1.41e-13,52;UBERON:0006241,1.41e-13,52;UBERON:0007135,1.41e-13,52;UBERON:0002020,2.48e-12,34;UBERON:0000955,6.59e-12,47;UBERON:0006238,6.59e-12,47;UBERON:0002616,2.60e-11,46;UBERON:0003528,9.57e-11,29;UBERON:0002791,9.57e-11,29;UBERON:0001893,9.57e-11,29;UBERON:0003080,1.57e-10,40;UBERON:0002780,5.76e-10,39;UBERON:0001890,5.76e-10,39;UBERON:0006240,5.76e-10,39;UBERON:0002346,9.70e-10,64;UBERON:0003075,9.70e-10,64;UBERON:0007284,9.70e-10,64;UBERON:0010371,1.02e-09,73;UBERON:0001017,1.40e-08,73;UBERON:0003056,2.50e-08,49;UBERON:0001016,4.34e-08,75;UBERON:0004121,1.35e-07,95;UBERON:0000924,1.35e-07,95;UBERON:0006601,1.35e-07,95;UBERON:0002021,2.73e-07,10;UBERON:0000411,2.73e-07,10;UBERON:0001950,2.73e-07,10;UBERON:0000956,4.89e-07,21;UBERON:0001869,4.89e-07,21;UBERON:0000203,4.89e-07,21;UBERON:0000025,5.02e-07,114 | |||
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| |||
|short_description=p4@Atxn7l1 | |||
}} |
Revision as of 22:44, 12 September 2013
Short description: | p4@Atxn7l1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Atxn7l1_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000125192_5end |
EntrezGene: | Atxn7l1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.29e-08 | 23 |
neuroblast (sensu Vertebrata) | 9.29e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.25e-14 | 54 |
neural tube | 1.41e-13 | 52 |
neural rod | 1.41e-13 | 52 |
future spinal cord | 1.41e-13 | 52 |
neural keel | 1.41e-13 | 52 |
gray matter | 2.48e-12 | 34 |
brain | 6.59e-12 | 47 |
future brain | 6.59e-12 | 47 |
regional part of brain | 2.60e-11 | 46 |
brain grey matter | 9.57e-11 | 29 |
regional part of telencephalon | 9.57e-11 | 29 |
telencephalon | 9.57e-11 | 29 |
anterior neural tube | 1.57e-10 | 40 |
regional part of forebrain | 5.76e-10 | 39 |
forebrain | 5.76e-10 | 39 |
future forebrain | 5.76e-10 | 39 |
neurectoderm | 9.70e-10 | 64 |
neural plate | 9.70e-10 | 64 |
presumptive neural plate | 9.70e-10 | 64 |
ecto-epithelium | 1.02e-09 | 73 |
central nervous system | 1.40e-08 | 73 |
pre-chordal neural plate | 2.50e-08 | 49 |
nervous system | 4.34e-08 | 75 |
ectoderm-derived structure | 1.35e-07 | 95 |
ectoderm | 1.35e-07 | 95 |
presumptive ectoderm | 1.35e-07 | 95 |
occipital lobe | 2.73e-07 | 10 |
visual cortex | 2.73e-07 | 10 |
neocortex | 2.73e-07 | 10 |
cerebral cortex | 4.89e-07 | 21 |
cerebral hemisphere | 4.89e-07 | 21 |
pallium | 4.89e-07 | 21 |
tube | 5.02e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.