FFCP PHASE1:Mm9::chr4:70071368..70071394,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=214444|HGNC=|MCL_coexpression_id=2171|UniProt=E9Q8T6,E9PVW7,Q8K389|association_with_transcript=6bp_to_ENSMUST00000084491,ENSMUST00000098013,NM_145990,uc008thy.1,uc008thz.1_5end|description=CAGE_peak_4_at_Cdk5rap2_5end|id=chr4:70071368..70071394,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000153,4.44e-08,43|phase1_expression=2.24208385946712,0,0,0,0,1.6787927191189,0.233612640595526,0.258246646883153,0.140788722151667,0.234064526321993,0.34243593645101,0.638177271962691,0.684802919724823,0.34968160967599,0.666219523631325,4.04950534779652,2.79824751251259,0.157731082679119,0.548457734422955,1.27316895539409,1.02051948181284,1.48936426801328,1.82839852397255,0.159992422793407,0.22940928106717,0,0,0.430942465371778,0.380046838912748,0.504060259519861,0.443461021310609,3.17515336729816,1.23012957516914,0,0.866554859253824,1.16364251750945,0.612508068787107,1.67412652294763,0.7813353445238,1.57057123192139,0,0.683045484958446,0,2.14024590558481,0.811015449756117,0.917733760808408,0,1.09012578190223,0.659058548203415,0.972149495371417,0.979904951377538,2.87505128729943,0.335565212115473,0,0,0.514518872071894,0.85960031981627,0,1.61853168687678,0.528990979272033,2.53532561402472,0.338844532069132,0,0,0,0,1.49800055259202,0.768436610643109,3.52544681848824,2.43010688997043,2.94454945891935,0.856952953211411,0.662605622854841,2.69479758272899,4.40889166683887,1.83843757322004,0,0.638436690425939,0.614426133024974,1.18697658957174,1.55528994124096,2.6045668527838,0.279182999001381,1.12552522006336,0.916789486660861,1.17851434189467,2.13557521198654,2.42319279572891,2.19605960666234,5.59229544790213,0,0,0,0,0,0.448026887097336,0.702222100658759,0.852151612890289,0.519572009205738,2.47337702157238,1.69012103732017,5.13305909657271,15.2883143823987,21.3320010945999,1.73192832808971,1.26679932737549,1.51657333504435,0.79928715803342,1.8125651855302,0.742210695324124,3.29622120855658,2.74018930480927,0.691846491768175,1.50722640552623,2.11659672844269,1.50799909595611,0,0.433798070759735,1.76922110389975,4.20593809863264,2.65009822152472,3.87900202508178,0,0.292780797011547,2.09446706813455,0.510914110417183,1.1981512450592,1.79970819298022,2.03312363316904,0.898743836428936,0,1.38219787324151,0.695297280769106,0.255715457330331,0.83115217823824,0.486723789203273,2.85150218780886,1.8661045591514,1.51633655060205,0.631325567659422,5.85541993332167,4.59804208866946,3.42118046630164,3.31550599238573,5.10273743634959,4.09963904911519,4.40398105430725,0.776110112217047,5.38919982332106,6.80781888604149,5.27853372491847,3.94552318369635,5.83899223373756,3.48252166522167,3.70407845534298,3.38358253591438,1.40442637462647,2.05878325691772,1.70498099637356,2.48550927042602,3.28336483973535,3.24111710629827,3.07768156260773,1.77087808572663,3.23960937063494,2.32533944750408,2.14618721119695,2.10177616260905,2.63295759861569,1.97000956894914,0.405344047729279,0.146199987425332,0.219550115291051,0.536825675041487,0.420579897128254,2.16099685996497,0.330418782983798,1.05780226665418,4.90562976231038,3.71578674976702,2.44848176511977,2.21851877085677,1.55664630691409,1.71203063501303,1.42358718463353,0.658795818896044,1.25667604400135,1.59165177632921,0.779856348476481,0,0,0.398282546508734,2.84501851429623,5.36968009265725,2.25415471346161,4.48032921259691,2.90928730751439,4.1380133735288,2.84564417059158,1.91893192373483,1.255989822731,0.493588655687202,0,1.50160595144485,2.35870794135844,2.69834534861824,2.43432145666204,1.4470629585145,1.2731292589071,0.575392274901621,0.486405680325106,1.09824565275233,2.87536413054709,0.744281895337007,0.624075346229121,0.252578877947112,0.358794827043824,0,0,4.73728529426212,4.07412441105065,5.09235257325564,4.92849521405854,3.01511263395268,1.6663054862021,0.780534591431195,2.36452716159286,1.7717175171902,3.34855014180723,0.327726629431476,1.03610989119537,1.59113964439663,0,0,0.491764273019036,1.37968373152366,0.963303539926752,1.28932855251423,5.08198330667694,0.757412781613119,3.78609863299508,2.73307121007647,3.23135096599198,4.30143836314594,4.67877215573028,2.54768877709949,4.85772842009873,3.50707029493574,1.97643888973262,0.963963949265421,0.851640511249612,3.5613120733451,3.74640006513225,2.3095817216155,0,1.94224508923985,2.41858845571801,1.13163047853539,1.77181135728464,0.922305443831782,1.55056975900933,1.81766864738753,1.78248689192361,0.948110273807448,0,0,0.680879211507576,4.50152735078276,2.19909762430683,2.14337035031592,1.95074257006501,3.38900753443934,1.15184314421485,1.2178597964584,1.17335854031855,0.21183207086382,0.220528398054962,1.6488625294148,1.45317984026315,3.25689794612042,2.50681922406587,2.29797259643086,0.291480836629851,1.11255181206306,2.05045056957423,5.57244543500701,2.40752885580625,3.01389531207506,4.37421528707281,2.0590035588587,2.54967644990783,1.6794174278839,2.76399947608848,0.954670618015114,5.06137589729817,3.25311147402958,2.70013352054503,2.09088296014469,1.9652630737156,3.50647300600534,1.57041565878138,0.785267825952089,0.648074866458964,0.621339313086926,2.25477175473676,4.63501292736334,3.14371131868485,2.91676782516071,3.35815541042101,3.8859908862879,3.28600268208111,5.07797100891405,1.8874681996628,0.966336483304024,3.45636007509439,2.8441000856536,6.28448167399509,3.49217254360413,5.06691209613401,3.04345382634718,2.38417625737518,4.68762253127878,3.83992770653901,4.74542314756294,4.95344243257499,4.83965688656834,3.31356794515158,4.04089734889384,3.03879945672079,0.906921534460845,0.665957860122194,0.986852422704233,1.17519231454855,0.772758376128762,1.12609485270709,2.19781949120718,1.71494703263253,0,0.564751842617067,0.460325236507177,0,0,0,0,1.35004500046361,0.900642406448441,0.906284817968409,0.51776031175182,3.52876981786201,7.98049746802062,4.95127456686989,4.37592090722929,3.14419743941973,1.65459157605013,3.11145418922261,3.09052585858341,2.24643446714271,2.52697211763797,2.02783439912192,2.45214243801899,1.96647165686753,2.75308155340938,2.81433797882505,0.952587382566147,3.94006708212509,3.27945674788299,2.88460130562315,3.38557516309114,2.40008476669791,2.48466128623072,2.14592570952589,2.47088908274958,2.82328141245992,2.5384382367503,3.10977553883713,0.789209134313529,3.12349461845482,1.12228454331548,3.08451047122853,3.64466584789585,1.22769312950907,2.47898945897546,2.50778594275484,3.99696924700713,2.10538447600868,2.36358159453128,0.956441660344217,1.32354851471709,0.695603506861264|short_description=p4@Cdk5rap2}} | ||
|EntrezGene=214444 | |||
|HGNC= | |||
|MCL_coexpression_id=2171 | |||
|UniProt=E9Q8T6,E9PVW7,Q8K389 | |||
|association_with_transcript=6bp_to_ENSMUST00000084491,ENSMUST00000098013,NM_145990,uc008thy.1,uc008thz.1_5end | |||
|description=CAGE_peak_4_at_Cdk5rap2_5end | |||
|id=chr4:70071368..70071394,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000153,4.44e-08,43 | |||
|phase1_expression=2.24208385946712,0,0,0,0,1.6787927191189,0.233612640595526,0.258246646883153,0.140788722151667,0.234064526321993,0.34243593645101,0.638177271962691,0.684802919724823,0.34968160967599,0.666219523631325,4.04950534779652,2.79824751251259,0.157731082679119,0.548457734422955,1.27316895539409,1.02051948181284,1.48936426801328,1.82839852397255,0.159992422793407,0.22940928106717,0,0,0.430942465371778,0.380046838912748,0.504060259519861,0.443461021310609,3.17515336729816,1.23012957516914,0,0.866554859253824,1.16364251750945,0.612508068787107,1.67412652294763,0.7813353445238,1.57057123192139,0,0.683045484958446,0,2.14024590558481,0.811015449756117,0.917733760808408,0,1.09012578190223,0.659058548203415,0.972149495371417,0.979904951377538,2.87505128729943,0.335565212115473,0,0,0.514518872071894,0.85960031981627,0,1.61853168687678,0.528990979272033,2.53532561402472,0.338844532069132,0,0,0,0,1.49800055259202,0.768436610643109,3.52544681848824,2.43010688997043,2.94454945891935,0.856952953211411,0.662605622854841,2.69479758272899,4.40889166683887,1.83843757322004,0,0.638436690425939,0.614426133024974,1.18697658957174,1.55528994124096,2.6045668527838,0.279182999001381,1.12552522006336,0.916789486660861,1.17851434189467,2.13557521198654,2.42319279572891,2.19605960666234,5.59229544790213,0,0,0,0,0,0.448026887097336,0.702222100658759,0.852151612890289,0.519572009205738,2.47337702157238,1.69012103732017,5.13305909657271,15.2883143823987,21.3320010945999,1.73192832808971,1.26679932737549,1.51657333504435,0.79928715803342,1.8125651855302,0.742210695324124,3.29622120855658,2.74018930480927,0.691846491768175,1.50722640552623,2.11659672844269,1.50799909595611,0,0.433798070759735,1.76922110389975,4.20593809863264,2.65009822152472,3.87900202508178,0,0.292780797011547,2.09446706813455,0.510914110417183,1.1981512450592,1.79970819298022,2.03312363316904,0.898743836428936,0,1.38219787324151,0.695297280769106,0.255715457330331,0.83115217823824,0.486723789203273,2.85150218780886,1.8661045591514,1.51633655060205,0.631325567659422,5.85541993332167,4.59804208866946,3.42118046630164,3.31550599238573,5.10273743634959,4.09963904911519,4.40398105430725,0.776110112217047,5.38919982332106,6.80781888604149,5.27853372491847,3.94552318369635,5.83899223373756,3.48252166522167,3.70407845534298,3.38358253591438,1.40442637462647,2.05878325691772,1.70498099637356,2.48550927042602,3.28336483973535,3.24111710629827,3.07768156260773,1.77087808572663,3.23960937063494,2.32533944750408,2.14618721119695,2.10177616260905,2.63295759861569,1.97000956894914,0.405344047729279,0.146199987425332,0.219550115291051,0.536825675041487,0.420579897128254,2.16099685996497,0.330418782983798,1.05780226665418,4.90562976231038,3.71578674976702,2.44848176511977,2.21851877085677,1.55664630691409,1.71203063501303,1.42358718463353,0.658795818896044,1.25667604400135,1.59165177632921,0.779856348476481,0,0,0.398282546508734,2.84501851429623,5.36968009265725,2.25415471346161,4.48032921259691,2.90928730751439,4.1380133735288,2.84564417059158,1.91893192373483,1.255989822731,0.493588655687202,0,1.50160595144485,2.35870794135844,2.69834534861824,2.43432145666204,1.4470629585145,1.2731292589071,0.575392274901621,0.486405680325106,1.09824565275233,2.87536413054709,0.744281895337007,0.624075346229121,0.252578877947112,0.358794827043824,0,0,4.73728529426212,4.07412441105065,5.09235257325564,4.92849521405854,3.01511263395268,1.6663054862021,0.780534591431195,2.36452716159286,1.7717175171902,3.34855014180723,0.327726629431476,1.03610989119537,1.59113964439663,0,0,0.491764273019036,1.37968373152366,0.963303539926752,1.28932855251423,5.08198330667694,0.757412781613119,3.78609863299508,2.73307121007647,3.23135096599198,4.30143836314594,4.67877215573028,2.54768877709949,4.85772842009873,3.50707029493574,1.97643888973262,0.963963949265421,0.851640511249612,3.5613120733451,3.74640006513225,2.3095817216155,0,1.94224508923985,2.41858845571801,1.13163047853539,1.77181135728464,0.922305443831782,1.55056975900933,1.81766864738753,1.78248689192361,0.948110273807448,0,0,0.680879211507576,4.50152735078276,2.19909762430683,2.14337035031592,1.95074257006501,3.38900753443934,1.15184314421485,1.2178597964584,1.17335854031855,0.21183207086382,0.220528398054962,1.6488625294148,1.45317984026315,3.25689794612042,2.50681922406587,2.29797259643086,0.291480836629851,1.11255181206306,2.05045056957423,5.57244543500701,2.40752885580625,3.01389531207506,4.37421528707281,2.0590035588587,2.54967644990783,1.6794174278839,2.76399947608848,0.954670618015114,5.06137589729817,3.25311147402958,2.70013352054503,2.09088296014469,1.9652630737156,3.50647300600534,1.57041565878138,0.785267825952089,0.648074866458964,0.621339313086926,2.25477175473676,4.63501292736334,3.14371131868485,2.91676782516071,3.35815541042101,3.8859908862879,3.28600268208111,5.07797100891405,1.8874681996628,0.966336483304024,3.45636007509439,2.8441000856536,6.28448167399509,3.49217254360413,5.06691209613401,3.04345382634718,2.38417625737518,4.68762253127878,3.83992770653901,4.74542314756294,4.95344243257499,4.83965688656834,3.31356794515158,4.04089734889384,3.03879945672079,0.906921534460845,0.665957860122194,0.986852422704233,1.17519231454855,0.772758376128762,1.12609485270709,2.19781949120718,1.71494703263253,0,0.564751842617067,0.460325236507177,0,0,0,0,1.35004500046361,0.900642406448441,0.906284817968409,0.51776031175182,3.52876981786201,7.98049746802062,4.95127456686989,4.37592090722929,3.14419743941973,1.65459157605013,3.11145418922261,3.09052585858341,2.24643446714271,2.52697211763797,2.02783439912192,2.45214243801899,1.96647165686753,2.75308155340938,2.81433797882505,0.952587382566147,3.94006708212509,3.27945674788299,2.88460130562315,3.38557516309114,2.40008476669791,2.48466128623072,2.14592570952589,2.47088908274958,2.82328141245992,2.5384382367503,3.10977553883713,0.789209134313529,3.12349461845482,1.12228454331548,3.08451047122853,3.64466584789585,1.22769312950907,2.47898945897546,2.50778594275484,3.99696924700713,2.10538447600868,2.36358159453128,0.956441660344217,1.32354851471709,0.695603506861264 | |||
|short_description=p4@Cdk5rap2 | |||
}} | |||
Revision as of 05:25, 14 September 2013
| Short description: | p4@Cdk5rap2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Cdk5rap2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:2171 |
| Association with transcript: | 6bp_to_ENSMUST00000084491, ENSMUST00000098013, NM_145990, uc008thy.1, uc008thz.1_5end |
| EntrezGene: | Cdk5rap2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| anterior region of body | 4.44e-08 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
