FFCP PHASE1:Mm9::chr2:30271707..30271741,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=110854|HGNC=|MCL_coexpression_id=3343|UniProt=|association_with_transcript=0bp_to_ENSMUST00000125743_5end|description=CAGE_peak_3_at_Ppp2r4_5end|id=chr2:30271707..30271741,+|ontology_enrichment_celltype=CL:0000221!3.75e-18!44;CL:0000133!3.75e-18!44;CL:0002319!8.18e-18!43;CL:0000540!7.79e-14!33;CL:0000047!7.79e-14!33;CL:0000031!7.79e-14!33;CL:0000404!7.79e-14!33;CL:0000055!2.71e-13!50;CL:0000393!1.98e-10!39;CL:0000211!1.98e-10!39;CL:0000117!1.88e-08!23;CL:0000337!1.88e-08!23;CL:0000548!3.36e-07!115;CL:0000004!3.36e-07!115;CL:0000255!3.36e-07!115;CL:0002321!5.03e-07!70;CL:0000220!5.03e-07!70;CL:0000144!5.61e-07!121;CL:0000012!5.61e-07!121|ontology_enrichment_celltype_v019_2=CL:0000221,3.75e-18,44;CL:0000133,3.75e-18,44;CL:0002319,8.18e-18,43;CL:0000540,7.78e-14,33;CL:0000047,7.78e-14,33;CL:0000031,7.78e-14,33;CL:0000404,7.78e-14,33;CL:0000393,1.98e-10,39;CL:0000211,1.98e-10,39;CL:0000117,1.88e-08,23;CL:0000337,1.88e-08,23;CL:0002321,4.93e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.85e-19!73;UBERON:0005743!1.85e-19!73;UBERON:0000073!2.41e-19!75;UBERON:0001016!2.41e-19!75;UBERON:0004121!3.28e-13!102;UBERON:0000924!3.28e-13!102;UBERON:0006601!3.28e-13!102;UBERON:0002020!8.53e-11!34;UBERON:0001049!9.11e-11!52;UBERON:0005068!9.11e-11!52;UBERON:0006241!9.11e-11!52;UBERON:0007135!9.11e-11!52;UBERON:0002346!4.41e-10!71;UBERON:0003075!4.41e-10!71;UBERON:0007284!4.41e-10!71;UBERON:0002616!2.16e-09!49;UBERON:0002791!3.28e-09!29;UBERON:0003528!3.28e-09!29;UBERON:0001893!3.28e-09!29;UBERON:0002780!3.49e-09!39;UBERON:0001890!3.49e-09!39;UBERON:0006240!3.49e-09!39;UBERON:0000955!3.57e-09!50;UBERON:0006238!3.57e-09!50;UBERON:0003080!5.68e-09!40;UBERON:0003056!1.84e-08!49;UBERON:0000033!2.08e-08!63;UBERON:0000153!2.20e-08!94;UBERON:0007811!1.01e-07!86;UBERON:0000956!5.10e-07!21;UBERON:0001869!5.10e-07!21;UBERON:0000203!5.10e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.85e-19,73;UBERON:0001016,2.41e-19,75;UBERON:0004121,7.99e-15,95;UBERON:0000924,7.99e-15,95;UBERON:0006601,7.99e-15,95;UBERON:0002346,7.05e-12,64;UBERON:0003075,7.05e-12,64;UBERON:0007284,7.05e-12,64;UBERON:0000073,5.84e-11,54;UBERON:0002020,8.53e-11,34;UBERON:0001049,9.11e-11,52;UBERON:0005068,9.11e-11,52;UBERON:0006241,9.11e-11,52;UBERON:0007135,9.11e-11,52;UBERON:0010371,2.80e-10,73;UBERON:0003528,3.28e-09,29;UBERON:0002791,3.28e-09,29;UBERON:0001893,3.28e-09,29;UBERON:0002780,3.49e-09,39;UBERON:0001890,3.49e-09,39;UBERON:0006240,3.49e-09,39;UBERON:0002616,3.63e-09,46;UBERON:0003080,5.68e-09,40;UBERON:0000955,6.10e-09,47;UBERON:0006238,6.10e-09,47;UBERON:0003056,1.84e-08,49;UBERON:0000956,5.10e-07,21;UBERON:0001869,5.10e-07,21;UBERON:0000203,5.10e-07,21|phase1_expression=11.8510146857548,2.44282785347553,3.63999391511629,3.93203474698879,2.00358291978539,5.37213670118047,9.57811826441655,1.80772652818207,8.16574588479667,6.78787126333781,6.33506482434368,4.62678522172951,1.71200729931206,1.22388563386596,13.6575002344422,9.92128810210147,11.8925519281785,4.57420139769445,3.01651753932625,3.81950686618227,12.8415368128115,18.8652807281682,19.0675846071423,10.3995074815714,8.48814339948529,7.46501553349526,5.1691439539089,7.75696437669201,5.32065574477847,3.02436155711917,5.32153225572731,17.14582818341,10.4561013889377,0,5.19932915552294,4.48833542467929,5.9209113316087,2.51118978442145,3.1253413780952,2.61761871986899,1.17646297606203,2.73218193983378,0.971020706062307,3.65100772129174,5.17022349219524,2.56965453026354,19.559783608701,19.6222640742402,21.3095597252438,11.2769341463084,11.7588594165305,15.8127820801469,2.01339127269284,2.90144856804538,3.6970317905671,9.51859913333004,8.02293631828519,4.12537673821954,12.5436205732951,14.8117474196169,14.5781222806421,12.5372476865579,16.8966011261116,7.19919773825119,10.8775299882367,6.3943210345149,20.6724076257699,28.0479362884735,11.716926190858,16.605730414798,16.8259969081106,14.568200204594,15.0190607847097,10.534208732486,11.4056110511701,15.6267193723704,6.60695285996332,11.2364857514965,10.5988507946808,13.0567424852892,11.8019060247108,13.5437476344758,14.5175159480718,14.6318278608237,11.7654650788144,12.9636577608414,10.5355043791336,10.0655700745662,5.45228591998925,11.4113055761246,3.18850937571846,1.72084775396277,0.679971333707751,1.07940638327563,2.59910566979068,1.79210754838934,4.91555470461132,9.54409806437123,13.5088722393492,14.8402621294343,12.2533775205712,3.84979432242953,12.7402619853323,0,13.4224445426953,7.85415582972806,14.6602089054287,4.68153906848146,2.07150306917737,3.11728492036132,10.5826049327343,6.39377504455497,5.30415643688935,6.0289056221049,6.82014501387088,4.14699751387929,3.70792451601561,3.03658649531814,3.5384422077995,6.47067399789637,5.07935492458905,5.33362778448744,1.86391761218122,4.9772735491963,3.77004072264219,5.10914110417183,16.8939325553348,17.3971791988088,22.7455706460786,6.89036941262184,8.23501085073528,10.0523481690292,10.081810571152,9.972902835882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| ||
|EntrezGene=110854 | |||
|HGNC= | |||
|MCL_coexpression_id=3343 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000125743_5end | |||
|description=CAGE_peak_3_at_Ppp2r4_5end | |||
|id=chr2:30271707..30271741,+ | |||
|ontology_enrichment_celltype=CL:0000221!3.75e-18!44;CL:0000133!3.75e-18!44;CL:0002319!8.18e-18!43;CL:0000540!7.79e-14!33;CL:0000047!7.79e-14!33;CL:0000031!7.79e-14!33;CL:0000404!7.79e-14!33;CL:0000055!2.71e-13!50;CL:0000393!1.98e-10!39;CL:0000211!1.98e-10!39;CL:0000117!1.88e-08!23;CL:0000337!1.88e-08!23;CL:0000548!3.36e-07!115;CL:0000004!3.36e-07!115;CL:0000255!3.36e-07!115;CL:0002321!5.03e-07!70;CL:0000220!5.03e-07!70;CL:0000144!5.61e-07!121;CL:0000012!5.61e-07!121 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.75e-18,44;CL:0000133,3.75e-18,44;CL:0002319,8.18e-18,43;CL:0000540,7.78e-14,33;CL:0000047,7.78e-14,33;CL:0000031,7.78e-14,33;CL:0000404,7.78e-14,33;CL:0000393,1.98e-10,39;CL:0000211,1.98e-10,39;CL:0000117,1.88e-08,23;CL:0000337,1.88e-08,23;CL:0002321,4.93e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.85e-19!73;UBERON:0005743!1.85e-19!73;UBERON:0000073!2.41e-19!75;UBERON:0001016!2.41e-19!75;UBERON:0004121!3.28e-13!102;UBERON:0000924!3.28e-13!102;UBERON:0006601!3.28e-13!102;UBERON:0002020!8.53e-11!34;UBERON:0001049!9.11e-11!52;UBERON:0005068!9.11e-11!52;UBERON:0006241!9.11e-11!52;UBERON:0007135!9.11e-11!52;UBERON:0002346!4.41e-10!71;UBERON:0003075!4.41e-10!71;UBERON:0007284!4.41e-10!71;UBERON:0002616!2.16e-09!49;UBERON:0002791!3.28e-09!29;UBERON:0003528!3.28e-09!29;UBERON:0001893!3.28e-09!29;UBERON:0002780!3.49e-09!39;UBERON:0001890!3.49e-09!39;UBERON:0006240!3.49e-09!39;UBERON:0000955!3.57e-09!50;UBERON:0006238!3.57e-09!50;UBERON:0003080!5.68e-09!40;UBERON:0003056!1.84e-08!49;UBERON:0000033!2.08e-08!63;UBERON:0000153!2.20e-08!94;UBERON:0007811!1.01e-07!86;UBERON:0000956!5.10e-07!21;UBERON:0001869!5.10e-07!21;UBERON:0000203!5.10e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.85e-19,73;UBERON:0001016,2.41e-19,75;UBERON:0004121,7.99e-15,95;UBERON:0000924,7.99e-15,95;UBERON:0006601,7.99e-15,95;UBERON:0002346,7.05e-12,64;UBERON:0003075,7.05e-12,64;UBERON:0007284,7.05e-12,64;UBERON:0000073,5.84e-11,54;UBERON:0002020,8.53e-11,34;UBERON:0001049,9.11e-11,52;UBERON:0005068,9.11e-11,52;UBERON:0006241,9.11e-11,52;UBERON:0007135,9.11e-11,52;UBERON:0010371,2.80e-10,73;UBERON:0003528,3.28e-09,29;UBERON:0002791,3.28e-09,29;UBERON:0001893,3.28e-09,29;UBERON:0002780,3.49e-09,39;UBERON:0001890,3.49e-09,39;UBERON:0006240,3.49e-09,39;UBERON:0002616,3.63e-09,46;UBERON:0003080,5.68e-09,40;UBERON:0000955,6.10e-09,47;UBERON:0006238,6.10e-09,47;UBERON:0003056,1.84e-08,49;UBERON:0000956,5.10e-07,21;UBERON:0001869,5.10e-07,21;UBERON:0000203,5.10e-07,21 | |||
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| |||
|short_description=p3@Ppp2r4 | |||
}} |
Revision as of 23:41, 13 September 2013
Short description: | p3@Ppp2r4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ppp2r4_5end |
Coexpression cluster: | MCL_coexpression_mm9:3343 |
Association with transcript: | 0bp_to_ENSMUST00000125743_5end |
EntrezGene: | Ppp2r4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.75e-18 | 44 |
neurectodermal cell | 3.75e-18 | 44 |
neural cell | 8.18e-18 | 43 |
neuron | 7.78e-14 | 33 |
neuronal stem cell | 7.78e-14 | 33 |
neuroblast | 7.78e-14 | 33 |
electrically signaling cell | 7.78e-14 | 33 |
electrically responsive cell | 1.98e-10 | 39 |
electrically active cell | 1.98e-10 | 39 |
CNS neuron (sensu Vertebrata) | 1.88e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.88e-08 | 23 |
embryonic cell | 4.93e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.85e-19 | 73 |
nervous system | 2.41e-19 | 75 |
ectoderm-derived structure | 7.99e-15 | 95 |
ectoderm | 7.99e-15 | 95 |
presumptive ectoderm | 7.99e-15 | 95 |
neurectoderm | 7.05e-12 | 64 |
neural plate | 7.05e-12 | 64 |
presumptive neural plate | 7.05e-12 | 64 |
regional part of nervous system | 5.84e-11 | 54 |
gray matter | 8.53e-11 | 34 |
neural tube | 9.11e-11 | 52 |
neural rod | 9.11e-11 | 52 |
future spinal cord | 9.11e-11 | 52 |
neural keel | 9.11e-11 | 52 |
ecto-epithelium | 2.80e-10 | 73 |
brain grey matter | 3.28e-09 | 29 |
regional part of telencephalon | 3.28e-09 | 29 |
telencephalon | 3.28e-09 | 29 |
regional part of forebrain | 3.49e-09 | 39 |
forebrain | 3.49e-09 | 39 |
future forebrain | 3.49e-09 | 39 |
regional part of brain | 3.63e-09 | 46 |
anterior neural tube | 5.68e-09 | 40 |
brain | 6.10e-09 | 47 |
future brain | 6.10e-09 | 47 |
pre-chordal neural plate | 1.84e-08 | 49 |
cerebral cortex | 5.10e-07 | 21 |
cerebral hemisphere | 5.10e-07 | 21 |
pallium | 5.10e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.