FFCP PHASE1:Mm9::chr7:25862363..25862382,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=232976|HGNC=|UniProt=Q8BY46|association_with_transcript=98bp_to_ENSMUST00000053410,NM_175477,uc009frk.2_5end|description=CAGE_peak_2_at_Zfp574_5end|id=chr7:25862363..25862382,+|ontology_enrichment_celltype=CL:0000221!1.35e-10!44;CL:0000133!1.35e-10!44;CL:0002319!2.85e-10!43;CL:0000117!5.26e-10!23;CL:0000337!5.26e-10!23;CL:0000540!5.61e-08!33;CL:0000047!5.61e-08!33;CL:0000031!5.61e-08!33;CL:0000404!5.61e-08!33;CL:0000055!2.19e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,2.81e-12,23;CL:0000337,2.81e-12,23;CL:0000221,4.97e-12,44;CL:0000133,4.97e-12,44;CL:0002319,1.27e-11,43;CL:0000540,6.59e-09,33;CL:0000047,6.59e-09,33;CL:0000031,6.59e-09,33;CL:0000404,6.59e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.19e-19!73;UBERON:0005743!4.19e-19!73;UBERON:0000033!4.13e-18!63;UBERON:0000073!8.56e-18!75;UBERON:0001016!8.56e-18!75;UBERON:0002346!2.16e-17!71;UBERON:0003075!2.16e-17!71;UBERON:0007284!2.16e-17!71;UBERON:0004121!2.53e-16!102;UBERON:0000924!2.53e-16!102;UBERON:0006601!2.53e-16!102;UBERON:0001049!6.73e-16!52;UBERON:0005068!6.73e-16!52;UBERON:0006241!6.73e-16!52;UBERON:0007135!6.73e-16!52;UBERON:0000955!6.29e-15!50;UBERON:0006238!6.29e-15!50;UBERON:0003056!1.42e-14!49;UBERON:0002616!1.87e-14!49;UBERON:0003080!1.35e-11!40;UBERON:0002780!3.47e-11!39;UBERON:0001890!3.47e-11!39;UBERON:0006240!3.47e-11!39;UBERON:0000153!1.52e-10!94;UBERON:0007811!3.00e-10!86;UBERON:0002020!1.09e-09!34;UBERON:0002791!1.57e-07!29;UBERON:0003528!1.57e-07!29;UBERON:0001893!1.57e-07!29;UBERON:0000025!2.99e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.47e-23,64;UBERON:0003075,6.47e-23,64;UBERON:0007284,6.47e-23,64;UBERON:0001017,1.23e-21,73;UBERON:0004121,1.58e-20,95;UBERON:0000924,1.58e-20,95;UBERON:0006601,1.58e-20,95;UBERON:0001016,1.94e-20,75;UBERON:0000073,2.75e-20,54;UBERON:0010371,2.34e-19,73;UBERON:0001049,5.06e-19,52;UBERON:0005068,5.06e-19,52;UBERON:0006241,5.06e-19,52;UBERON:0007135,5.06e-19,52;UBERON:0003056,2.49e-17,49;UBERON:0000955,3.73e-16,47;UBERON:0006238,3.73e-16,47;UBERON:0002616,1.45e-15,46;UBERON:0010314,1.07e-14,92;UBERON:0003080,1.62e-13,40;UBERON:0002780,5.38e-13,39;UBERON:0001890,5.38e-13,39;UBERON:0006240,5.38e-13,39;UBERON:0002020,4.40e-11,34;UBERON:0003528,2.27e-08,29;UBERON:0002791,2.27e-08,29;UBERON:0001893,2.27e-08,29;UBERON:0000025,1.62e-07,114;UBERON:0004111,8.72e-07,122|phase1_expression=1.44133962394315,0,1.36499771816861,0,0.500895729946347,0,0.467225281191051,0.129123323441576,1.12630977721333,1.40438715793196,0.34243593645101,0.239316476986009,0.171200729931206,0.0874204024189974,0.333109761815663,0.202475267389826,0,0.157731082679119,0.137114433605739,0,2.21112554392781,0.397163804803541,0,0.47997726838022,0.91763712426868,0,0,0.215471232685889,0.950117097281869,0.756090389279792,0.221730510655305,0.635030673459631,0,0,0.288851619751275,0.166234645358492,0.204169356262369,0,0,0,0,0,0.485510353031154,0.755380907853464,0.608261587317087,0.367093504323363,3.12956537739216,2.18025156380447,2.63623419281366,2.13872888981712,0.979904951377538,2.87505128729943,0,0.725362142011344,1.00828139742739,0.257259436035947,0.573066879877513,0,1.41621522601718,1.5869729378161,2.53532561402472,1.0165335962074,0.889294796111139,0,0,0,1.79760066311043,3.07374644257244,1.76272340924412,1.21505344498522,2.3135745748652,2.28520787523043,1.54607978666129,2.20483438586917,1.82106394934649,2.75765635983006,2.20231761998777,2.68143409978894,1.22885226604995,1.71452174049252,2.74462930807229,2.6045668527838,1.3959149950069,0.56276261003168,1.68078072554491,1.76777151284201,2.13557521198654,2.23679334990361,0.075726193333184,0.302286240427142,0.579728977403356,0,0,0.539703191637817,0.649776417447669,1.79210754838934,0.983110940922263,0.170430322578058,0.259786004602869,0.70667914902068,1.54927761754349,0,0,0,0,0,0,2.96878087269556,0,1.03909497345377,0.520455980298408,0,0.922461989024234,0.60289056221049,1.29347577849275,0.879666139307728,1.23597483867187,1.44599356919912,0,0.323533699894818,0.441683036920787,0,0,1.17112318804619,1.04723353406728,0.255457055208591,1.43778149407104,1.79970819298022,0.889491589511453,1.79748767285787,1.37250180845588,1.88481528169297,0.521472960576829,1.53429274398198,1.45451631191692,2.92034273521964,1.2220723662038,0.248813941220186,0,1.89397670297827,1.56144531555244,1.14951052216736,1.80062129805349,1.20563854268572,1.90502197623718,2.0498195245576,2.24884138943349,1.03481348295606,3.66465587985832,2.26927296201383,1.58356011747554,1.09597866213787,0.834141747676794,0.696504333044333,0.205782136407943,1.99034266818493,0.702213187313235,0.772043721344145,0.568326998791185,0.828503090142008,1.17263029990548,0.720248245844059,0.946978942340841,1.18058539048442,0.308534225774757,0.697601834251224,1.3413670069981,1.5179494507732,0.822799249567402,0.985004784474571,0.56748166682099,0.438599962275997,0.219550115291051,0.134206418760372,1.89260953707715,1.9551876352064,0.330418782983798,0.264450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| ||
|EntrezGene=232976 | |||
|HGNC= | |||
|UniProt=Q8BY46 | |||
|association_with_transcript=98bp_to_ENSMUST00000053410,NM_175477,uc009frk.2_5end | |||
|description=CAGE_peak_2_at_Zfp574_5end | |||
|id=chr7:25862363..25862382,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.35e-10!44;CL:0000133!1.35e-10!44;CL:0002319!2.85e-10!43;CL:0000117!5.26e-10!23;CL:0000337!5.26e-10!23;CL:0000540!5.61e-08!33;CL:0000047!5.61e-08!33;CL:0000031!5.61e-08!33;CL:0000404!5.61e-08!33;CL:0000055!2.19e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.81e-12,23;CL:0000337,2.81e-12,23;CL:0000221,4.97e-12,44;CL:0000133,4.97e-12,44;CL:0002319,1.27e-11,43;CL:0000540,6.59e-09,33;CL:0000047,6.59e-09,33;CL:0000031,6.59e-09,33;CL:0000404,6.59e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.19e-19!73;UBERON:0005743!4.19e-19!73;UBERON:0000033!4.13e-18!63;UBERON:0000073!8.56e-18!75;UBERON:0001016!8.56e-18!75;UBERON:0002346!2.16e-17!71;UBERON:0003075!2.16e-17!71;UBERON:0007284!2.16e-17!71;UBERON:0004121!2.53e-16!102;UBERON:0000924!2.53e-16!102;UBERON:0006601!2.53e-16!102;UBERON:0001049!6.73e-16!52;UBERON:0005068!6.73e-16!52;UBERON:0006241!6.73e-16!52;UBERON:0007135!6.73e-16!52;UBERON:0000955!6.29e-15!50;UBERON:0006238!6.29e-15!50;UBERON:0003056!1.42e-14!49;UBERON:0002616!1.87e-14!49;UBERON:0003080!1.35e-11!40;UBERON:0002780!3.47e-11!39;UBERON:0001890!3.47e-11!39;UBERON:0006240!3.47e-11!39;UBERON:0000153!1.52e-10!94;UBERON:0007811!3.00e-10!86;UBERON:0002020!1.09e-09!34;UBERON:0002791!1.57e-07!29;UBERON:0003528!1.57e-07!29;UBERON:0001893!1.57e-07!29;UBERON:0000025!2.99e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.47e-23,64;UBERON:0003075,6.47e-23,64;UBERON:0007284,6.47e-23,64;UBERON:0001017,1.23e-21,73;UBERON:0004121,1.58e-20,95;UBERON:0000924,1.58e-20,95;UBERON:0006601,1.58e-20,95;UBERON:0001016,1.94e-20,75;UBERON:0000073,2.75e-20,54;UBERON:0010371,2.34e-19,73;UBERON:0001049,5.06e-19,52;UBERON:0005068,5.06e-19,52;UBERON:0006241,5.06e-19,52;UBERON:0007135,5.06e-19,52;UBERON:0003056,2.49e-17,49;UBERON:0000955,3.73e-16,47;UBERON:0006238,3.73e-16,47;UBERON:0002616,1.45e-15,46;UBERON:0010314,1.07e-14,92;UBERON:0003080,1.62e-13,40;UBERON:0002780,5.38e-13,39;UBERON:0001890,5.38e-13,39;UBERON:0006240,5.38e-13,39;UBERON:0002020,4.40e-11,34;UBERON:0003528,2.27e-08,29;UBERON:0002791,2.27e-08,29;UBERON:0001893,2.27e-08,29;UBERON:0000025,1.62e-07,114;UBERON:0004111,8.72e-07,122 | |||
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| |||
|short_description=p2@Zfp574 | |||
}} |
Revision as of 12:52, 14 September 2013
Short description: | p2@Zfp574 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Zfp574_5end |
Coexpression cluster: | NA |
Association with transcript: | 98bp_to_ENSMUST00000053410, NM_175477, uc009frk.2_5end |
EntrezGene: | Zfp574 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.81e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.81e-12 | 23 |
ectodermal cell | 4.97e-12 | 44 |
neurectodermal cell | 4.97e-12 | 44 |
neural cell | 1.27e-11 | 43 |
neuron | 6.59e-09 | 33 |
neuronal stem cell | 6.59e-09 | 33 |
neuroblast | 6.59e-09 | 33 |
electrically signaling cell | 6.59e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 6.47e-23 | 64 |
neural plate | 6.47e-23 | 64 |
presumptive neural plate | 6.47e-23 | 64 |
central nervous system | 1.23e-21 | 73 |
ectoderm-derived structure | 1.58e-20 | 95 |
ectoderm | 1.58e-20 | 95 |
presumptive ectoderm | 1.58e-20 | 95 |
nervous system | 1.94e-20 | 75 |
regional part of nervous system | 2.75e-20 | 54 |
ecto-epithelium | 2.34e-19 | 73 |
neural tube | 5.06e-19 | 52 |
neural rod | 5.06e-19 | 52 |
future spinal cord | 5.06e-19 | 52 |
neural keel | 5.06e-19 | 52 |
pre-chordal neural plate | 2.49e-17 | 49 |
brain | 3.73e-16 | 47 |
future brain | 3.73e-16 | 47 |
regional part of brain | 1.45e-15 | 46 |
structure with developmental contribution from neural crest | 1.07e-14 | 92 |
anterior neural tube | 1.62e-13 | 40 |
regional part of forebrain | 5.38e-13 | 39 |
forebrain | 5.38e-13 | 39 |
future forebrain | 5.38e-13 | 39 |
gray matter | 4.40e-11 | 34 |
brain grey matter | 2.27e-08 | 29 |
regional part of telencephalon | 2.27e-08 | 29 |
telencephalon | 2.27e-08 | 29 |
tube | 1.62e-07 | 114 |
anatomical conduit | 8.72e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.