FFCP PHASE1:Mm9::chr17:13185469..13185514,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=60532|HGNC=|MCL_coexpression_id=482|UniProt=Q9ER69|association_with_transcript=-57bp_to_ENSMUST00000160781_5end|description=CAGE_peak_3_at_Wtap_5end|id=chr17:13185469..13185514,-|ontology_enrichment_celltype=CL:0000117!4.38e-10!23;CL:0000337!4.38e-10!23;CL:0000540!5.32e-09!33;CL:0000047!5.32e-09!33;CL:0000031!5.32e-09!33;CL:0000404!5.32e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.82e-10,23;CL:0000337,3.82e-10,23;CL:0000540,4.71e-09,33;CL:0000047,4.71e-09,33;CL:0000031,4.71e-09,33;CL:0000404,4.71e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!1.49e-17!94;UBERON:0007811!1.07e-14!86;UBERON:0002020!4.58e-14!34;UBERON:0002780!1.86e-12!39;UBERON:0001890!1.86e-12!39;UBERON:0006240!1.86e-12!39;UBERON:0003080!1.86e-12!40;UBERON:0001017!4.63e-12!73;UBERON:0005743!4.63e-12!73;UBERON:0001049!6.13e-12!52;UBERON:0005068!6.13e-12!52;UBERON:0006241!6.13e-12!52;UBERON:0007135!6.13e-12!52;UBERON:0002791!9.39e-12!29;UBERON:0003528!9.39e-12!29;UBERON:0001893!9.39e-12!29;UBERON:0003056!1.28e-11!49;UBERON:0000073!4.69e-11!75;UBERON:0001016!4.69e-11!75;UBERON:0000955!1.23e-10!50;UBERON:0006238!1.23e-10!50;UBERON:0002616!3.26e-10!49;UBERON:0000956!1.04e-09!21;UBERON:0001869!1.04e-09!21;UBERON:0000203!1.04e-09!21;UBERON:0000033!2.03e-09!63;UBERON:0002346!1.17e-08!71;UBERON:0003075!1.17e-08!71;UBERON:0007284!1.17e-08!71;UBERON:0004121!7.35e-08!102;UBERON:0000924!7.35e-08!102;UBERON:0006601!7.35e-08!102;UBERON:0002619!2.31e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002020,6.23e-14,34;UBERON:0002780,1.97e-12,39;UBERON:0001890,1.97e-12,39;UBERON:0006240,1.97e-12,39;UBERON:0003080,1.97e-12,40;UBERON:0000073,2.75e-12,54;UBERON:0001017,5.41e-12,73;UBERON:0001049,7.21e-12,52;UBERON:0005068,7.21e-12,52;UBERON:0006241,7.21e-12,52;UBERON:0007135,7.21e-12,52;UBERON:0003528,1.31e-11,29;UBERON:0002791,1.31e-11,29;UBERON:0001893,1.31e-11,29;UBERON:0003056,1.58e-11,49;UBERON:0002346,4.90e-11,64;UBERON:0003075,4.90e-11,64;UBERON:0007284,4.90e-11,64;UBERON:0001016,6.86e-11,75;UBERON:0010371,8.65e-11,73;UBERON:0000955,2.84e-10,47;UBERON:0006238,2.84e-10,47;UBERON:0002616,7.52e-10,46;UBERON:0000956,1.53e-09,21;UBERON:0001869,1.53e-09,21;UBERON:0000203,1.53e-09,21;UBERON:0004121,1.92e-09,95;UBERON:0000924,1.92e-09,95;UBERON:0006601,1.92e-09,95;UBERON:0002619,3.41e-07,17;UBERON:0000153,5.33e-07,43|phase1_expression=4.96461426024861,0.348975407639361,1.36499771816861,0.30246421130683,0.500895729946347,1.34303417529512,2.33612640595526,15.236552166106,9.43284438416167,11.7032263160997,4.45166717386313,4.78632953972018,12.6688540149092,18.7079661176654,7.66152452176024,3.44207954562704,4.89693314689703,4.57420139769445,5.75880621144103,1.27316895539409,3.14660173558958,0.992909512008853,0.261199789138935,1.59992422793407,0.45881856213434,0.57423196411502,0.86152399231815,1.07735616342945,0.760093677825496,2.26827116783938,2.88249663851896,1.27006134691926,0.61506478758457,0,4.33277429626912,2.32728503501889,3.87921776898501,3.34825304589526,3.1253413780952,0.523523743973798,3.52938892818609,3.41522742479223,0.971020706062307,1.25896817975577,1.01376931219515,1.65192076945513,0.782391344348039,1.52617609466313,0.659058548203415,0.972149495371417,0.979904951377538,0,4.53013036355888,11.6057942721815,8.4023449785616,0.514518872071894,0.85960031981627,0.515672092277442,33.5845325026932,37.0293685490423,34.8607271928399,1.69422266034566,1.77858959222228,0.449949858640699,0,0,1.19840044207362,2.68952813725088,51.7411165419304,59.807630680939,68.1452874778478,11.7116903605559,12.8103753751936,63.5727247925611,52.8108545310482,84.5681283681219,6.60695285996332,5.87361755191863,5.06901559745603,35.4774113994221,32.4781134788554,34.9011958273029,1.3959149950069,3.93933827022176,6.41752640662602,20.0347438122094,14.0947963991112,30.9423080069999,0.908714319998209,1.13357340160178,0.869593466105033,0.860423876981386,3.39985666853875,0,0,0.448026887097336,1.54488862144927,0.852151612890289,0.519572009205738,0.70667914902068,4.78867627240714,0,0,0,1.73192832808971,2.28023878927589,2.02209778005913,1.59857431606684,3.88406825470758,1.1875371125186,3.12273588179045,2.74018930480927,1.38369298353635,1.3565037649736,1.52865319276416,0.376999773989026,0.741584903203122,0.578397427679647,0.884610551949874,1.29413479957927,2.20841518460394,0.969750506270444,0,1.75668478206928,2.30391377494801,1.53274233125155,5.99075622529601,2.39961092397363,3.30382590389968,5.09288173976397,16.9275223042892,70.1151284789783,15.1227158567281,20.4572365864264,3.94797284663164,13.7905073607594,4.78645010096487,1.36847667671102,1.0108910337347,0.841767423545896,9.10843100738926,5.51765050640335,7.92273371143537,5.72678307775717,5.64702942956021,3.71529788826064,4.49768277886698,1.55222022443409,11.4251036254406,14.3720620927543,15.1317966780996,20.1660073833369,16.4047877043103,8.00979983000983,11.3180175024369,9.35461054046918,1.40442637462647,2.05878325691772,2.84163499395593,2.27838349789052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| ||
|EntrezGene=60532 | |||
|HGNC= | |||
|MCL_coexpression_id=482 | |||
|UniProt=Q9ER69 | |||
|association_with_transcript=-57bp_to_ENSMUST00000160781_5end | |||
|description=CAGE_peak_3_at_Wtap_5end | |||
|id=chr17:13185469..13185514,- | |||
|ontology_enrichment_celltype=CL:0000117!4.38e-10!23;CL:0000337!4.38e-10!23;CL:0000540!5.32e-09!33;CL:0000047!5.32e-09!33;CL:0000031!5.32e-09!33;CL:0000404!5.32e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.82e-10,23;CL:0000337,3.82e-10,23;CL:0000540,4.71e-09,33;CL:0000047,4.71e-09,33;CL:0000031,4.71e-09,33;CL:0000404,4.71e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.49e-17!94;UBERON:0007811!1.07e-14!86;UBERON:0002020!4.58e-14!34;UBERON:0002780!1.86e-12!39;UBERON:0001890!1.86e-12!39;UBERON:0006240!1.86e-12!39;UBERON:0003080!1.86e-12!40;UBERON:0001017!4.63e-12!73;UBERON:0005743!4.63e-12!73;UBERON:0001049!6.13e-12!52;UBERON:0005068!6.13e-12!52;UBERON:0006241!6.13e-12!52;UBERON:0007135!6.13e-12!52;UBERON:0002791!9.39e-12!29;UBERON:0003528!9.39e-12!29;UBERON:0001893!9.39e-12!29;UBERON:0003056!1.28e-11!49;UBERON:0000073!4.69e-11!75;UBERON:0001016!4.69e-11!75;UBERON:0000955!1.23e-10!50;UBERON:0006238!1.23e-10!50;UBERON:0002616!3.26e-10!49;UBERON:0000956!1.04e-09!21;UBERON:0001869!1.04e-09!21;UBERON:0000203!1.04e-09!21;UBERON:0000033!2.03e-09!63;UBERON:0002346!1.17e-08!71;UBERON:0003075!1.17e-08!71;UBERON:0007284!1.17e-08!71;UBERON:0004121!7.35e-08!102;UBERON:0000924!7.35e-08!102;UBERON:0006601!7.35e-08!102;UBERON:0002619!2.31e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,6.23e-14,34;UBERON:0002780,1.97e-12,39;UBERON:0001890,1.97e-12,39;UBERON:0006240,1.97e-12,39;UBERON:0003080,1.97e-12,40;UBERON:0000073,2.75e-12,54;UBERON:0001017,5.41e-12,73;UBERON:0001049,7.21e-12,52;UBERON:0005068,7.21e-12,52;UBERON:0006241,7.21e-12,52;UBERON:0007135,7.21e-12,52;UBERON:0003528,1.31e-11,29;UBERON:0002791,1.31e-11,29;UBERON:0001893,1.31e-11,29;UBERON:0003056,1.58e-11,49;UBERON:0002346,4.90e-11,64;UBERON:0003075,4.90e-11,64;UBERON:0007284,4.90e-11,64;UBERON:0001016,6.86e-11,75;UBERON:0010371,8.65e-11,73;UBERON:0000955,2.84e-10,47;UBERON:0006238,2.84e-10,47;UBERON:0002616,7.52e-10,46;UBERON:0000956,1.53e-09,21;UBERON:0001869,1.53e-09,21;UBERON:0000203,1.53e-09,21;UBERON:0004121,1.92e-09,95;UBERON:0000924,1.92e-09,95;UBERON:0006601,1.92e-09,95;UBERON:0002619,3.41e-07,17;UBERON:0000153,5.33e-07,43 | |||
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| |||
|short_description=p3@Wtap | |||
}} |
Revision as of 13:33, 13 September 2013
Short description: | p3@Wtap |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Wtap_5end |
Coexpression cluster: | MCL_coexpression_mm9:482 |
Association with transcript: | -57bp_to_ENSMUST00000160781_5end |
EntrezGene: | Wtap |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.82e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.82e-10 | 23 |
neuron | 4.71e-09 | 33 |
neuronal stem cell | 4.71e-09 | 33 |
neuroblast | 4.71e-09 | 33 |
electrically signaling cell | 4.71e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
gray matter | 6.23e-14 | 34 |
regional part of forebrain | 1.97e-12 | 39 |
forebrain | 1.97e-12 | 39 |
future forebrain | 1.97e-12 | 39 |
anterior neural tube | 1.97e-12 | 40 |
regional part of nervous system | 2.75e-12 | 54 |
central nervous system | 5.41e-12 | 73 |
neural tube | 7.21e-12 | 52 |
neural rod | 7.21e-12 | 52 |
future spinal cord | 7.21e-12 | 52 |
neural keel | 7.21e-12 | 52 |
brain grey matter | 1.31e-11 | 29 |
regional part of telencephalon | 1.31e-11 | 29 |
telencephalon | 1.31e-11 | 29 |
pre-chordal neural plate | 1.58e-11 | 49 |
neurectoderm | 4.90e-11 | 64 |
neural plate | 4.90e-11 | 64 |
presumptive neural plate | 4.90e-11 | 64 |
nervous system | 6.86e-11 | 75 |
ecto-epithelium | 8.65e-11 | 73 |
brain | 2.84e-10 | 47 |
future brain | 2.84e-10 | 47 |
regional part of brain | 7.52e-10 | 46 |
cerebral cortex | 1.53e-09 | 21 |
cerebral hemisphere | 1.53e-09 | 21 |
pallium | 1.53e-09 | 21 |
ectoderm-derived structure | 1.92e-09 | 95 |
ectoderm | 1.92e-09 | 95 |
presumptive ectoderm | 1.92e-09 | 95 |
regional part of cerebral cortex | 3.41e-07 | 17 |
anterior region of body | 5.33e-07 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.