FFCP PHASE1:Mm9::chr4:116380867..116380874,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67096|HGNC=|UniProt=|association_with_transcript=18bp_to_ENSMUST00000143330_5end|description=CAGE_peak_2_at_Mmachc_5end|id=chr4:116380867..116380874,-|ontology_enrichment_celltype=CL:0000117!2.10e-07!23;CL:0000337!2.10e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.68e-08,23;CL:0000337,1.68e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.95e-10!75;UBERON:0001016!6.95e-10!75;UBERON:0001017!1.03e-09!73;UBERON:0005743!1.03e-09!73;UBERON:0001049!2.01e-09!52;UBERON:0005068!2.01e-09!52;UBERON:0006241!2.01e-09!52;UBERON:0007135!2.01e-09!52;UBERON:0000955!1.70e-08!50;UBERON:0006238!1.70e-08!50;UBERON:0002616!2.00e-08!49;UBERON:0004121!5.66e-08!102;UBERON:0000924!5.66e-08!102;UBERON:0006601!5.66e-08!102;UBERON:0000033!8.15e-08!63;UBERON:0002346!5.55e-07!71;UBERON:0003075!5.55e-07!71;UBERON:0007284!5.55e-07!71|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.82e-09,54;UBERON:0001049,2.20e-08,52;UBERON:0005068,2.20e-08,52;UBERON:0006241,2.20e-08,52;UBERON:0007135,2.20e-08,52;UBERON:0001017,2.42e-08,73;UBERON:0001016,6.31e-08,75|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0.422366166455,0.234064526321993,0.68487187290202,0.319088635981346,0,0.174840804837995,0,0,0,0,0.137114433605739,0,1.02051948181284,0.297872853602656,0,0,0.22940928106717,0,0.430761996159075,0.215471232685889,0,0,0,0.635030673459631,0.61506478758457,0,0.577703239502549,0.498703936075477,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0.304130793658544,0.734187008646726,0.782391344348039,0.218025156380447,0.439372365468944,1.1665793944457,0.839918529752175,0,0,0,0.336093799142464,0.514518872071894,0.286533439938757,0,0.809265843438391,1.05798195854407,1.26766280701236,0.338844532069132,0.889294796111139,0.899899717281399,0,0,0,0.768436610643109,0.829516898467821,1.4850653216486,0.420649922702764,1.42825492201902,0.662605622854841,0.734944795289724,1.0543001812006,0,1.10115880999389,1.14918604276669,1.22885226604995,0.923204014111357,1.00636407962651,0.52091337055676,1.95428099300967,1.68828783009504,1.83357897332172,0.883885756421003,1.13897344639282,1.67759501242771,0.530083353332288,0.755715601067855,0.289864488701678,0,1.3599426674155,0,0.649776417447669,0.896053774194671,0.561777680527007,0.340860645156116,0.259786004602869,0,0.14084341977668,0,0,0,0.216491041011214,1.01343946190039,0.505524445014783,0.45673551887624,0.258937883647172,0.29688427812965,0.520455980298408,0,0.230615497256059,0.301445281105245,0.117588707135705,0.376999773989026,0.247194967734374,1.15679485535929,0,0.323533699894818,0.662524555381181,0,0,1.17112318804619,0.41889341362691,0.766371165625774,0.359445373517761,0,0.635351135365324,1.19832511523858,0.457500602818626,1.00523481690292,1.56441888173049,0.767146371990992,1.24672826735736,0.811206315338788,0.407357455401265,0.622034853050465,2.77995034277042,0.631325567659422,0.650602214813519,0.229902104433473,0.900310649026746,0.753524089178575,0.340182495756639,0.2562274405697,0.187403449119458,0.258703370739016,0.431135985865684,0.378212160335639,0.879755620819744,1.53437012699302,0.278047249225598,2.089512999133,0.411564272815887,0.796137067273973,0,0.257347907114715,0.284163499395593,1.03562886267751,0.938104239924385,0.900310307305074,0.473489471170421,0.983821158737019,0.462801338662135,0.465067889500816,1.87791380979733,0.583826711835847,1.48103864922132,0.32833492815819,0.891756905004413,0.730999937126662,0.439100230582101,0.671032093801859,1.68231958851302,0.823236899034275,0,0.528901133327089,0.426576501070468,0.464473343720877,0.77320476793256,0,0,0.380451252225118,0.474529061544512,0.164698954724011,0.754005626400808,0,0,0,0.216138049874694,0,1.32767530667157,0.114248512609729,0,0.814605311381257,0.387904974335251,0.140271639780637,0.252946148497029,0.295220295959204,0.156998727841375,0.246794327843601,0,0.500535317148282,0.196558995113203,0.224862112384854,0,0.241177159752417,0.25462585178142,0,0,0.823684239564244,0,0.372140947668503,0.624075346229121,1.26289438973556,0.896987067609561,0,0,1.32643988239339,1.14075483509418,0.169745085775188,0.234690248288502,0,0,0.195133647857799,0.157635144106191,0,0.159454768657487,0.163863314715738,0,0,0,0,0.983528546038072,1.37968373152366,0.80275294993896,1.40654023910644,3.93443868904021,2.01976741763498,0.315508219416257,1.17131623288992,0.430846795465598,0,0.668396022247182,0,0.404810701674894,0.292255857911312,0.790575555893047,0.642642632843614,0.141940085208269,0.178065603667255,0.325773918707152,0.494910368917606,2.65490276679926,0.971122544619926,0,0.188605079755898,0,0.307435147943927,0.258428293168221,0,0.356497378384721,0.948110273807448,2.10837217149998,1.03135543248187,1.70219802876894,0.720244376125241,0.905510786479282,0,0.709360934569094,1.07021290561242,0.658196082408484,0.608929898229199,0,0.42366414172764,0.441056796109924,0.65954501176592,0.322928853391811,0.482503399425247,0.119372344003136,0.328281799490123,0,2.03967832211561,0.341741761595705,0.8255474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| ||
|EntrezGene=67096 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=18bp_to_ENSMUST00000143330_5end | |||
|description=CAGE_peak_2_at_Mmachc_5end | |||
|id=chr4:116380867..116380874,- | |||
|ontology_enrichment_celltype=CL:0000117!2.10e-07!23;CL:0000337!2.10e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.68e-08,23;CL:0000337,1.68e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.95e-10!75;UBERON:0001016!6.95e-10!75;UBERON:0001017!1.03e-09!73;UBERON:0005743!1.03e-09!73;UBERON:0001049!2.01e-09!52;UBERON:0005068!2.01e-09!52;UBERON:0006241!2.01e-09!52;UBERON:0007135!2.01e-09!52;UBERON:0000955!1.70e-08!50;UBERON:0006238!1.70e-08!50;UBERON:0002616!2.00e-08!49;UBERON:0004121!5.66e-08!102;UBERON:0000924!5.66e-08!102;UBERON:0006601!5.66e-08!102;UBERON:0000033!8.15e-08!63;UBERON:0002346!5.55e-07!71;UBERON:0003075!5.55e-07!71;UBERON:0007284!5.55e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.82e-09,54;UBERON:0001049,2.20e-08,52;UBERON:0005068,2.20e-08,52;UBERON:0006241,2.20e-08,52;UBERON:0007135,2.20e-08,52;UBERON:0001017,2.42e-08,73;UBERON:0001016,6.31e-08,75 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0.422366166455,0.234064526321993,0.68487187290202,0.319088635981346,0,0.174840804837995,0,0,0,0,0.137114433605739,0,1.02051948181284,0.297872853602656,0,0,0.22940928106717,0,0.430761996159075,0.215471232685889,0,0,0,0.635030673459631,0.61506478758457,0,0.577703239502549,0.498703936075477,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0.304130793658544,0.734187008646726,0.782391344348039,0.218025156380447,0.439372365468944,1.1665793944457,0.839918529752175,0,0,0,0.336093799142464,0.514518872071894,0.286533439938757,0,0.809265843438391,1.05798195854407,1.26766280701236,0.338844532069132,0.889294796111139,0.899899717281399,0,0,0,0.768436610643109,0.829516898467821,1.4850653216486,0.420649922702764,1.42825492201902,0.662605622854841,0.734944795289724,1.0543001812006,0,1.10115880999389,1.14918604276669,1.22885226604995,0.923204014111357,1.00636407962651,0.52091337055676,1.95428099300967,1.68828783009504,1.83357897332172,0.883885756421003,1.13897344639282,1.67759501242771,0.530083353332288,0.755715601067855,0.289864488701678,0,1.3599426674155,0,0.649776417447669,0.896053774194671,0.561777680527007,0.340860645156116,0.259786004602869,0,0.14084341977668,0,0,0,0.216491041011214,1.01343946190039,0.505524445014783,0.45673551887624,0.258937883647172,0.29688427812965,0.520455980298408,0,0.230615497256059,0.301445281105245,0.117588707135705,0.376999773989026,0.247194967734374,1.15679485535929,0,0.323533699894818,0.662524555381181,0,0,1.17112318804619,0.41889341362691,0.766371165625774,0.359445373517761,0,0.635351135365324,1.19832511523858,0.457500602818626,1.00523481690292,1.56441888173049,0.767146371990992,1.24672826735736,0.811206315338788,0.407357455401265,0.622034853050465,2.77995034277042,0.631325567659422,0.650602214813519,0.229902104433473,0.900310649026746,0.753524089178575,0.340182495756639,0.2562274405697,0.187403449119458,0.258703370739016,0.431135985865684,0.378212160335639,0.879755620819744,1.53437012699302,0.278047249225598,2.089512999133,0.411564272815887,0.796137067273973,0,0.257347907114715,0.284163499395593,1.03562886267751,0.938104239924385,0.900310307305074,0.473489471170421,0.983821158737019,0.462801338662135,0.465067889500816,1.87791380979733,0.583826711835847,1.48103864922132,0.32833492815819,0.891756905004413,0.730999937126662,0.439100230582101,0.671032093801859,1.68231958851302,0.823236899034275,0,0.528901133327089,0.426576501070468,0.464473343720877,0.77320476793256,0,0,0.380451252225118,0.474529061544512,0.164698954724011,0.754005626400808,0,0,0,0.216138049874694,0,1.32767530667157,0.114248512609729,0,0.814605311381257,0.387904974335251,0.140271639780637,0.252946148497029,0.295220295959204,0.156998727841375,0.246794327843601,0,0.500535317148282,0.196558995113203,0.224862112384854,0,0.241177159752417,0.25462585178142,0,0,0.823684239564244,0,0.372140947668503,0.624075346229121,1.26289438973556,0.896987067609561,0,0,1.32643988239339,1.14075483509418,0.169745085775188,0.234690248288502,0,0,0.195133647857799,0.157635144106191,0,0.159454768657487,0.163863314715738,0,0,0,0,0.983528546038072,1.37968373152366,0.80275294993896,1.40654023910644,3.93443868904021,2.01976741763498,0.315508219416257,1.17131623288992,0.430846795465598,0,0.668396022247182,0,0.404810701674894,0.292255857911312,0.790575555893047,0.642642632843614,0.141940085208269,0.178065603667255,0.325773918707152,0.494910368917606,2.65490276679926,0.971122544619926,0,0.188605079755898,0,0.307435147943927,0.258428293168221,0,0.356497378384721,0.948110273807448,2.10837217149998,1.03135543248187,1.70219802876894,0.720244376125241,0.905510786479282,0,0.709360934569094,1.07021290561242,0.658196082408484,0.608929898229199,0,0.42366414172764,0.441056796109924,0.65954501176592,0.322928853391811,0.482503399425247,0.119372344003136,0.328281799490123,0,2.03967832211561,0.341741761595705,0.82554747185289,0.555583582109135,0,0.136694227721025,0,0,0.139951452323658,0.276399947608848,0.954670618015114,1.10717597753397,0.609958401380546,0.432021363287205,0,0.87345025498471,0.269728692769641,0.578574190077352,0,0.90730481304255,0.621339313086926,7.32800820289447,0.598066184175915,1.15820943319968,0.583353565032143,0.774958940866387,0.337912250981556,0.821500670520278,1.0416350787516,0.734015410979976,2.41584120826006,3.16833006883652,0.316011120628178,0.810900861160657,0.410843828659309,0.77952493786677,0.537080087002444,0.39736270956253,0.240390899039938,0,0.302899349844443,0.15241361331,0.100826185136841,0.487289403698762,0.0962118416403295,0.233753804363138,1.36038230169127,1.77588762699252,1.61484941897056,0.671538465456314,0.965947970160952,0,0,0.214368379079066,0.501572104035363,1.12950368523413,0.920650473014354,1.71868654031819,1.20297227640581,0.685082519770642,0,0,0.900642406448441,0,0.51776031175182,0.518936737920883,0.399024873401031,0.512200817262403,1.21553358534147,0.209613162627982,0.919217542250071,1.11123363900808,0.206035057238894,0.64183841918363,0.252697211763798,0.50695859978048,0.565879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| |||
|short_description=p2@Mmachc | |||
}} | |||
Revision as of 03:32, 14 September 2013
| Short description: | p2@Mmachc |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Mmachc_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 18bp_to_ENSMUST00000143330_5end |
| EntrezGene: | Mmachc |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 1.68e-08 | 23 |
| neuroblast (sensu Vertebrata) | 1.68e-08 | 23 |
| Ontology term | p-value | n |
|---|---|---|
| regional part of nervous system | 1.82e-09 | 54 |
| neural tube | 2.20e-08 | 52 |
| neural rod | 2.20e-08 | 52 |
| future spinal cord | 2.20e-08 | 52 |
| neural keel | 2.20e-08 | 52 |
| central nervous system | 2.42e-08 | 73 |
| nervous system | 6.31e-08 | 75 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
