FFCP PHASE1:Mm9::chr11:51814282..51814296,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22210|HGNC=|UniProt=P63147|association_with_transcript=-18bp_to_ENSMUST00000109086,ENSMUST00000147833_5end|description=CAGE_peak_6_at_Ube2b_5end|id=chr11:51814282..51814296,-|ontology_enrichment_celltype=CL:0000221!1.89e-09!44;CL:0000133!1.89e-09!44;CL:0000540!3.38e-09!33;CL:0000047!3.38e-09!33;CL:0000031!3.38e-09!33;CL:0000404!3.38e-09!33;CL:0002319!4.66e-09!43;CL:0000393!3.71e-08!39;CL:0000211!3.71e-08!39;CL:0000055!1.42e-07!50;CL:0000117!9.15e-07!23;CL:0000337!9.15e-07!23|ontology_enrichment_celltype_v019_2=CL:0000221,1.24e-09,44;CL:0000133,1.24e-09,44;CL:0000540,1.76e-09,33;CL:0000047,1.76e-09,33;CL:0000031,1.76e-09,33;CL:0000404,1.76e-09,33;CL:0002319,3.13e-09,43;CL:0000393,4.23e-08,39;CL:0000211,4.23e-08,39;CL:0000117,5.86e-07,23;CL:0000337,5.86e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.50e-15!73;UBERON:0005743!8.50e-15!73;UBERON:0000073!7.39e-14!75;UBERON:0001016!7.39e-14!75;UBERON:0004121!5.87e-13!102;UBERON:0000924!5.87e-13!102;UBERON:0006601!5.87e-13!102;UBERON:0002346!1.04e-12!71;UBERON:0003075!1.04e-12!71;UBERON:0007284!1.04e-12!71;UBERON:0002616!2.71e-12!49;UBERON:0000955!1.29e-11!50;UBERON:0006238!1.29e-11!50;UBERON:0001049!1.38e-11!52;UBERON:0005068!1.38e-11!52;UBERON:0006241!1.38e-11!52;UBERON:0007135!1.38e-11!52;UBERON:0000033!1.60e-11!63;UBERON:0003080!2.12e-09!40;UBERON:0002780!4.42e-09!39;UBERON:0001890!4.42e-09!39;UBERON:0006240!4.42e-09!39;UBERON:0003056!8.80e-09!49;UBERON:0002020!1.00e-08!34;UBERON:0002791!2.82e-08!29;UBERON:0003528!2.82e-08!29;UBERON:0001893!2.82e-08!29;UBERON:0000025!8.74e-08!114;UBERON:0004111!1.03e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0010314,5.20e-19,92;UBERON:0001017,2.71e-15,73;UBERON:0001016,5.29e-14,75;UBERON:0000073,4.47e-13,54;UBERON:0004121,2.88e-12,95;UBERON:0000924,2.88e-12,95;UBERON:0006601,2.88e-12,95;UBERON:0002346,4.50e-12,64;UBERON:0003075,4.50e-12,64;UBERON:0007284,4.50e-12,64;UBERON:0001049,9.05e-12,52;UBERON:0005068,9.05e-12,52;UBERON:0006241,9.05e-12,52;UBERON:0007135,9.05e-12,52;UBERON:0010371,2.78e-11,73;UBERON:0002616,3.37e-11,46;UBERON:0000955,1.66e-10,47;UBERON:0006238,1.66e-10,47;UBERON:0003080,1.66e-09,40;UBERON:0002780,3.55e-09,39;UBERON:0001890,3.55e-09,39;UBERON:0006240,3.55e-09,39;UBERON:0003056,6.12e-09,49;UBERON:0002020,8.42e-09,34;UBERON:0003528,2.51e-08,29;UBERON:0002791,2.51e-08,29;UBERON:0001893,2.51e-08,29;UBERON:0004111,1.72e-07,122;UBERON:0000025,2.04e-07,114|phase1_expression=2.5623815536767,0.697950815278722,1.36499771816861,0.30246421130683,1.50268718983904,1.6787927191189,0.934450562382103,0.129123323441576,0.281577444303333,0.234064526321993,0,0.159544317990673,0.513602189793617,0.262261207256992,0.333109761815663,1.41732687172878,0.699561878128147,0.788655413395594,0.411343300817216,0.42438965179803,2.63634199468316,1.98581902401771,0.783599367416806,1.27993938234725,1.83527424853736,1.14846392823004,2.58457197695445,1.72376986148711,0.760093677825496,1.51218077855958,1.55211357458713,0.635030673459631,1.84519436275371,0,3.46621943701529,2.1610503896604,2.45003227514843,0.837063261473815,2.3440060335714,3.14114246384279,1.17646297606203,1.36609096991689,0.971020706062307,2.01434908760924,2.63580021170738,0.917733760808408,2.34717403304412,3.2703773457067,2.19686182734472,3.30530828426282,3.3596741190087,0,1.34226084846189,1.45072428402269,1.00828139742739,2.05807548828758,0.85960031981627,0.515672092277442,2.22548106945558,1.05798195854407,2.53532561402472,1.35537812827653,0,1.7997994345628,0,2.1314403448383,1.19840044207362,1.92109152660777,2.38486108309499,2.8351247049655,2.3135745748652,2.57085885963423,1.32521124570968,1.5923803897944,2.68367318851062,4.5960939330501,2.20231761998777,2.68143409978894,4.45458946443106,1.31886287730194,3.47653045689157,2.6045668527838,1.95428099300967,5.6276261003168,3.81995619442025,2.06240009831567,1.70846016958924,2.05039390407831,0.832988126665025,0.906858721281426,1.15945795480671,0,0.679971333707751,1.61910957491345,1.29955283489534,0.896053774194671,3.08977724289854,0.170430322578058,1.03914401841148,0.70667914902068,2.67602497575693,0,2.54805239706646,0,0.649473123033642,0.760079596425296,0.505524445014783,2.05530983494308,0.258937883647172,2.22663208597237,1.56136794089522,0.913396434936424,1.84492397804847,1.80867168663147,3.05730638552832,2.76466500925286,0.988779870937496,1.59059292611903,0,2.91180329905337,3.75430581382669,0.969750506270444,0,1.17112318804619,2.09446706813455,1.02182822083437,1.43778149407104,3.59941638596045,2.1601938602421,2.39665023047716,1.83000241127451,2.76439574648302,2.78118912307642,3.83573185995496,1.87009240103604,4.05603157669394,1.2220723662038,1.99051152976149,1.51633655060205,0.420883711772948,1.30120442962704,2.06911893990126,1.62055916824814,1.65775299619287,1.7009124787832,1.40925092313335,1.49922759295566,2.32833033665114,1.29340795759705,1.13463648100692,0.879755620819744,1.31517439456545,0.278047249225598,0.696504333044333,1.23469281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| ||
|EntrezGene=22210 | |||
|HGNC= | |||
|UniProt=P63147 | |||
|association_with_transcript=-18bp_to_ENSMUST00000109086,ENSMUST00000147833_5end | |||
|description=CAGE_peak_6_at_Ube2b_5end | |||
|id=chr11:51814282..51814296,- | |||
|ontology_enrichment_celltype=CL:0000221!1.89e-09!44;CL:0000133!1.89e-09!44;CL:0000540!3.38e-09!33;CL:0000047!3.38e-09!33;CL:0000031!3.38e-09!33;CL:0000404!3.38e-09!33;CL:0002319!4.66e-09!43;CL:0000393!3.71e-08!39;CL:0000211!3.71e-08!39;CL:0000055!1.42e-07!50;CL:0000117!9.15e-07!23;CL:0000337!9.15e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.24e-09,44;CL:0000133,1.24e-09,44;CL:0000540,1.76e-09,33;CL:0000047,1.76e-09,33;CL:0000031,1.76e-09,33;CL:0000404,1.76e-09,33;CL:0002319,3.13e-09,43;CL:0000393,4.23e-08,39;CL:0000211,4.23e-08,39;CL:0000117,5.86e-07,23;CL:0000337,5.86e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.50e-15!73;UBERON:0005743!8.50e-15!73;UBERON:0000073!7.39e-14!75;UBERON:0001016!7.39e-14!75;UBERON:0004121!5.87e-13!102;UBERON:0000924!5.87e-13!102;UBERON:0006601!5.87e-13!102;UBERON:0002346!1.04e-12!71;UBERON:0003075!1.04e-12!71;UBERON:0007284!1.04e-12!71;UBERON:0002616!2.71e-12!49;UBERON:0000955!1.29e-11!50;UBERON:0006238!1.29e-11!50;UBERON:0001049!1.38e-11!52;UBERON:0005068!1.38e-11!52;UBERON:0006241!1.38e-11!52;UBERON:0007135!1.38e-11!52;UBERON:0000033!1.60e-11!63;UBERON:0003080!2.12e-09!40;UBERON:0002780!4.42e-09!39;UBERON:0001890!4.42e-09!39;UBERON:0006240!4.42e-09!39;UBERON:0003056!8.80e-09!49;UBERON:0002020!1.00e-08!34;UBERON:0002791!2.82e-08!29;UBERON:0003528!2.82e-08!29;UBERON:0001893!2.82e-08!29;UBERON:0000025!8.74e-08!114;UBERON:0004111!1.03e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,5.20e-19,92;UBERON:0001017,2.71e-15,73;UBERON:0001016,5.29e-14,75;UBERON:0000073,4.47e-13,54;UBERON:0004121,2.88e-12,95;UBERON:0000924,2.88e-12,95;UBERON:0006601,2.88e-12,95;UBERON:0002346,4.50e-12,64;UBERON:0003075,4.50e-12,64;UBERON:0007284,4.50e-12,64;UBERON:0001049,9.05e-12,52;UBERON:0005068,9.05e-12,52;UBERON:0006241,9.05e-12,52;UBERON:0007135,9.05e-12,52;UBERON:0010371,2.78e-11,73;UBERON:0002616,3.37e-11,46;UBERON:0000955,1.66e-10,47;UBERON:0006238,1.66e-10,47;UBERON:0003080,1.66e-09,40;UBERON:0002780,3.55e-09,39;UBERON:0001890,3.55e-09,39;UBERON:0006240,3.55e-09,39;UBERON:0003056,6.12e-09,49;UBERON:0002020,8.42e-09,34;UBERON:0003528,2.51e-08,29;UBERON:0002791,2.51e-08,29;UBERON:0001893,2.51e-08,29;UBERON:0004111,1.72e-07,122;UBERON:0000025,2.04e-07,114 | |||
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| |||
|short_description=p6@Ube2b | |||
}} |
Revision as of 19:52, 12 September 2013
Short description: | p6@Ube2b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Ube2b_5end |
Coexpression cluster: | NA |
Association with transcript: | -18bp_to_ENSMUST00000109086, ENSMUST00000147833_5end |
EntrezGene: | Ube2b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.24e-09 | 44 |
neurectodermal cell | 1.24e-09 | 44 |
neuron | 1.76e-09 | 33 |
neuronal stem cell | 1.76e-09 | 33 |
neuroblast | 1.76e-09 | 33 |
electrically signaling cell | 1.76e-09 | 33 |
neural cell | 3.13e-09 | 43 |
electrically responsive cell | 4.23e-08 | 39 |
electrically active cell | 4.23e-08 | 39 |
CNS neuron (sensu Vertebrata) | 5.86e-07 | 23 |
neuroblast (sensu Vertebrata) | 5.86e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 5.20e-19 | 92 |
central nervous system | 2.71e-15 | 73 |
nervous system | 5.29e-14 | 75 |
regional part of nervous system | 4.47e-13 | 54 |
ectoderm-derived structure | 2.88e-12 | 95 |
ectoderm | 2.88e-12 | 95 |
presumptive ectoderm | 2.88e-12 | 95 |
neurectoderm | 4.50e-12 | 64 |
neural plate | 4.50e-12 | 64 |
presumptive neural plate | 4.50e-12 | 64 |
neural tube | 9.05e-12 | 52 |
neural rod | 9.05e-12 | 52 |
future spinal cord | 9.05e-12 | 52 |
neural keel | 9.05e-12 | 52 |
ecto-epithelium | 2.78e-11 | 73 |
regional part of brain | 3.37e-11 | 46 |
brain | 1.66e-10 | 47 |
future brain | 1.66e-10 | 47 |
anterior neural tube | 1.66e-09 | 40 |
regional part of forebrain | 3.55e-09 | 39 |
forebrain | 3.55e-09 | 39 |
future forebrain | 3.55e-09 | 39 |
pre-chordal neural plate | 6.12e-09 | 49 |
gray matter | 8.42e-09 | 34 |
brain grey matter | 2.51e-08 | 29 |
regional part of telencephalon | 2.51e-08 | 29 |
telencephalon | 2.51e-08 | 29 |
anatomical conduit | 1.72e-07 | 122 |
tube | 2.04e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.