FFCP PHASE1:Mm9::chr13:46514389..46514406,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=413|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr13:46514389..46514406,+|id=chr13:46514389..46514406,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!1.41e-11!49;UBERON:0000033!4.15e-11!63;UBERON:0000956!2.05e-10!21;UBERON:0001869!2.05e-10!21;UBERON:0000203!2.05e-10!21;UBERON:0002791!3.17e-10!29;UBERON:0003528!3.17e-10!29;UBERON:0001893!3.17e-10!29;UBERON:0002020!1.68e-09!34;UBERON:0002619!1.25e-08!17;UBERON:0003080!1.27e-08!40;UBERON:0002021!2.02e-08!10;UBERON:0000411!2.02e-08!10;UBERON:0001950!2.02e-08!10;UBERON:0007100!2.91e-08!18;UBERON:0000948!2.91e-08!18;UBERON:0005498!2.91e-08!18;UBERON:0004140!2.91e-08!18;UBERON:0009881!2.91e-08!18;UBERON:0004141!2.91e-08!18;UBERON:0003084!2.91e-08!18;UBERON:0007005!2.91e-08!18;UBERON:0004139!2.91e-08!18;UBERON:0004291!2.91e-08!18;UBERON:0002780!3.17e-08!39;UBERON:0001890!3.17e-08!39;UBERON:0006240!3.17e-08!39;UBERON:0002346!8.22e-08!71;UBERON:0003075!8.22e-08!71;UBERON:0007284!8.22e-08!71;UBERON:0000955!2.05e-07!50;UBERON:0006238!2.05e-07!50;UBERON:0004121!2.65e-07!102;UBERON:0000924!2.65e-07!102;UBERON:0006601!2.65e-07!102;UBERON:0002616!3.32e-07!49;UBERON:0001049!7.48e-07!52;UBERON:0005068!7.48e-07!52;UBERON:0006241!7.48e-07!52;UBERON:0007135!7.48e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.26e-17,10;UBERON:0000411,2.26e-17,10;UBERON:0001950,2.26e-17,10;UBERON:0000956,3.72e-17,21;UBERON:0001869,3.72e-17,21;UBERON:0000203,3.72e-17,21;UBERON:0002619,5.06e-15,17;UBERON:0003528,8.78e-14,29;UBERON:0002791,8.78e-14,29;UBERON:0001893,8.78e-14,29;UBERON:0010314,3.94e-13,92;UBERON:0007100,3.70e-12,18;UBERON:0000948,3.70e-12,18;UBERON:0005498,3.70e-12,18;UBERON:0004140,3.70e-12,18;UBERON:0009881,3.70e-12,18;UBERON:0004141,3.70e-12,18;UBERON:0003084,3.70e-12,18;UBERON:0007005,3.70e-12,18;UBERON:0004139,3.70e-12,18;UBERON:0004291,3.70e-12,18;UBERON:0002020,2.31e-11,34;UBERON:0002780,1.44e-09,39;UBERON:0001890,1.44e-09,39;UBERON:0006240,1.44e-09,39;UBERON:0003080,2.91e-09,40;UBERON:0004535,3.74e-09,23;UBERON:0001009,3.74e-09,23;UBERON:0003056,2.83e-08,49;UBERON:0004111,9.11e-08,122;UBERON:0002616,1.02e-07,46;UBERON:0000025,1.08e-07,114;UBERON:0000955,1.70e-07,47;UBERON:0006238,1.70e-07,47|phase1_expression=0.640595388419176,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439372365468944,1.1665793944457,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898800331555214,0.384218305321555,0.311068836925433,1.21505344498522,0.420649922702764,0,0.220868540951614,0.122490799214954,0.0958454710182364,0,0,0.638436690425939,0.46081959976873,0.131886287730194,0.0914876436024097,0,0.558365998002762,0,1.06958773443767,0.294628585473668,0.427115042397309,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.563373679106722,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0.60289056221049,0,0,0,0.144599356919912,0,0.970601099684455,0.441683036920787,0.484875253135222,0,0,0,0,0.239630249011841,0,0,0.599162557619291,0.915001205637253,0.251308704225729,1.73824320192276,0.767146371990992,0.41557608911912,0.648965052271031,0,0.124406970610093,0.252722758433675,0.631325567659422,0.260240885925407,0.459804208866946,0.360124259610698,0.60281927134286,0.544291993210623,1.0249097622788,0.0937017245597288,0.776110112217047,0,0,0,0.219195732427575,0.278047249225598,0.696504333044333,0.205782136407943,0,0.702213187313235,0,0,2.27838349789052,1.87620847984877,0.900310307305074,3.31442629819294,0.983821158737019,2.1597395804233,2.09280550275367,0.536546802799238,2.10177616260905,0.658239399653922,0.985004784474571,1.21603214318784,3.07019973593198,1.3173006917463,0.536825675041487,1.47202963994889,0.411618449517138,0,0,0,0,0.38660238396628,0,0,0,0.474529061544512,0,0,0.198956472041151,0.19496408711912,0,0.432276099749388,0,0,0.114248512609729,0,0,0,0.140271639780637,0.0632365371242573,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0.37898282354097,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0,0.144649058581512,0,0,0,0.275936746304732,0.160550589987792,0.117211686592203,0,1.76729649043061,0,0.390438744296638,0,0,0,0.283076530788832,0.809621403349789,0,0,0.321321316421807,0.567760340833074,0,0.162886959353576,0.494910368917606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0.178368817602071,0,0.304464949114599,0,0,0,0.32977250588296,1.13025098687134,0.180938774784468,0,0,0.291480836629851,0.18542530201051,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0.406638934253697,0.216010681643603,0,0,0.269728692769641,0.247960367176008,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0.288030006257865,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0,0.0762068066549998,0.100826185136841,0,0,0,1.36038230169127,0,0,0,0.579568782096571,0.187682475451182,0.73260649706906,0.214368379079066,0,1.12950368523413,2.76195141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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=413 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr13:46514389..46514406,+ | |||
|id=chr13:46514389..46514406,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!1.41e-11!49;UBERON:0000033!4.15e-11!63;UBERON:0000956!2.05e-10!21;UBERON:0001869!2.05e-10!21;UBERON:0000203!2.05e-10!21;UBERON:0002791!3.17e-10!29;UBERON:0003528!3.17e-10!29;UBERON:0001893!3.17e-10!29;UBERON:0002020!1.68e-09!34;UBERON:0002619!1.25e-08!17;UBERON:0003080!1.27e-08!40;UBERON:0002021!2.02e-08!10;UBERON:0000411!2.02e-08!10;UBERON:0001950!2.02e-08!10;UBERON:0007100!2.91e-08!18;UBERON:0000948!2.91e-08!18;UBERON:0005498!2.91e-08!18;UBERON:0004140!2.91e-08!18;UBERON:0009881!2.91e-08!18;UBERON:0004141!2.91e-08!18;UBERON:0003084!2.91e-08!18;UBERON:0007005!2.91e-08!18;UBERON:0004139!2.91e-08!18;UBERON:0004291!2.91e-08!18;UBERON:0002780!3.17e-08!39;UBERON:0001890!3.17e-08!39;UBERON:0006240!3.17e-08!39;UBERON:0002346!8.22e-08!71;UBERON:0003075!8.22e-08!71;UBERON:0007284!8.22e-08!71;UBERON:0000955!2.05e-07!50;UBERON:0006238!2.05e-07!50;UBERON:0004121!2.65e-07!102;UBERON:0000924!2.65e-07!102;UBERON:0006601!2.65e-07!102;UBERON:0002616!3.32e-07!49;UBERON:0001049!7.48e-07!52;UBERON:0005068!7.48e-07!52;UBERON:0006241!7.48e-07!52;UBERON:0007135!7.48e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.26e-17,10;UBERON:0000411,2.26e-17,10;UBERON:0001950,2.26e-17,10;UBERON:0000956,3.72e-17,21;UBERON:0001869,3.72e-17,21;UBERON:0000203,3.72e-17,21;UBERON:0002619,5.06e-15,17;UBERON:0003528,8.78e-14,29;UBERON:0002791,8.78e-14,29;UBERON:0001893,8.78e-14,29;UBERON:0010314,3.94e-13,92;UBERON:0007100,3.70e-12,18;UBERON:0000948,3.70e-12,18;UBERON:0005498,3.70e-12,18;UBERON:0004140,3.70e-12,18;UBERON:0009881,3.70e-12,18;UBERON:0004141,3.70e-12,18;UBERON:0003084,3.70e-12,18;UBERON:0007005,3.70e-12,18;UBERON:0004139,3.70e-12,18;UBERON:0004291,3.70e-12,18;UBERON:0002020,2.31e-11,34;UBERON:0002780,1.44e-09,39;UBERON:0001890,1.44e-09,39;UBERON:0006240,1.44e-09,39;UBERON:0003080,2.91e-09,40;UBERON:0004535,3.74e-09,23;UBERON:0001009,3.74e-09,23;UBERON:0003056,2.83e-08,49;UBERON:0004111,9.11e-08,122;UBERON:0002616,1.02e-07,46;UBERON:0000025,1.08e-07,114;UBERON:0000955,1.70e-07,47;UBERON:0006238,1.70e-07,47 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439372365468944,1.1665793944457,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.898800331555214,0.384218305321555,0.311068836925433,1.21505344498522,0.420649922702764,0,0.220868540951614,0.122490799214954,0.0958454710182364,0,0,0.638436690425939,0.46081959976873,0.131886287730194,0.0914876436024097,0,0.558365998002762,0,1.06958773443767,0.294628585473668,0.427115042397309,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.563373679106722,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0.60289056221049,0,0,0,0.144599356919912,0,0.970601099684455,0.441683036920787,0.484875253135222,0,0,0,0,0.239630249011841,0,0,0.599162557619291,0.915001205637253,0.251308704225729,1.73824320192276,0.767146371990992,0.41557608911912,0.648965052271031,0,0.124406970610093,0.252722758433675,0.631325567659422,0.260240885925407,0.459804208866946,0.360124259610698,0.60281927134286,0.544291993210623,1.0249097622788,0.0937017245597288,0.776110112217047,0,0,0,0.219195732427575,0.278047249225598,0.696504333044333,0.205782136407943,0,0.702213187313235,0,0,2.27838349789052,1.87620847984877,0.900310307305074,3.31442629819294,0.983821158737019,2.1597395804233,2.09280550275367,0.536546802799238,2.10177616260905,0.658239399653922,0.985004784474571,1.21603214318784,3.07019973593198,1.3173006917463,0.536825675041487,1.47202963994889,0.411618449517138,0,0,0,0,0.38660238396628,0,0,0,0.474529061544512,0,0,0.198956472041151,0.19496408711912,0,0.432276099749388,0,0,0.114248512609729,0,0,0,0.140271639780637,0.0632365371242573,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0.37898282354097,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0,0.144649058581512,0,0,0,0.275936746304732,0.160550589987792,0.117211686592203,0,1.76729649043061,0,0.390438744296638,0,0,0,0.283076530788832,0.809621403349789,0,0,0.321321316421807,0.567760340833074,0,0.162886959353576,0.494910368917606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0.178368817602071,0,0.304464949114599,0,0,0,0.32977250588296,1.13025098687134,0.180938774784468,0,0,0.291480836629851,0.18542530201051,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0.406638934253697,0.216010681643603,0,0,0.269728692769641,0.247960367176008,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0.288030006257865,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0,0.0762068066549998,0.100826185136841,0,0,0,1.36038230169127,0,0,0,0.579568782096571,0.187682475451182,0.73260649706906,0.214368379079066,0,1.12950368523413,2.76195141904306,1.71868654031819,1.03111909406213,2.05524755931193,0.755393897389701,1.35004500046361,0.900642406448441,2.71885445390523,2.07104124700728,0.31136204275253,1.19707462020309,0.341467211508268,0.243106717068294,0.209613162627982,0.367687016900028,1.33348036680969,0.618105171716683,0.64183841918363,0.505394423527595,0.50695859978048,0.188626341386076,0.187283014939765,0.448176066834085,0.574354689556133,1.42888107384922,0.695305955669133,0.192909220463705,0.824171801606613,0.441596760403192,0.342869252385415,0,0.238436189947321,0.145346416632329,0.470546902076653,0.338458431566706,0.73171189149109,0.263069711437843,1.08643291076689,0.561142271657738,0.355905054372522,0.29551344712669,0,0.309873682371932,0.192906610981141,0.499621155875892,0,1.71896843238639,2.67803664896381,0.441182838239031,0.927471342481686 | |||
|short_description=p@chr13:46514389..46514406,+ | |||
}} |
Revision as of 00:38, 13 September 2013
Short description: | p@chr13:46514389..46514406, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:46514389..46514406, + |
Coexpression cluster: | MCL_coexpression_mm9:413 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 2.26e-17 | 10 |
visual cortex | 2.26e-17 | 10 |
neocortex | 2.26e-17 | 10 |
cerebral cortex | 3.72e-17 | 21 |
cerebral hemisphere | 3.72e-17 | 21 |
pallium | 3.72e-17 | 21 |
regional part of cerebral cortex | 5.06e-15 | 17 |
brain grey matter | 8.78e-14 | 29 |
regional part of telencephalon | 8.78e-14 | 29 |
telencephalon | 8.78e-14 | 29 |
structure with developmental contribution from neural crest | 3.94e-13 | 92 |
primary circulatory organ | 3.70e-12 | 18 |
heart | 3.70e-12 | 18 |
primitive heart tube | 3.70e-12 | 18 |
primary heart field | 3.70e-12 | 18 |
anterior lateral plate mesoderm | 3.70e-12 | 18 |
heart tube | 3.70e-12 | 18 |
heart primordium | 3.70e-12 | 18 |
cardiac mesoderm | 3.70e-12 | 18 |
cardiogenic plate | 3.70e-12 | 18 |
heart rudiment | 3.70e-12 | 18 |
gray matter | 2.31e-11 | 34 |
regional part of forebrain | 1.44e-09 | 39 |
forebrain | 1.44e-09 | 39 |
future forebrain | 1.44e-09 | 39 |
anterior neural tube | 2.91e-09 | 40 |
cardiovascular system | 3.74e-09 | 23 |
circulatory system | 3.74e-09 | 23 |
pre-chordal neural plate | 2.83e-08 | 49 |
anatomical conduit | 9.11e-08 | 122 |
regional part of brain | 1.02e-07 | 46 |
tube | 1.08e-07 | 114 |
brain | 1.70e-07 | 47 |
future brain | 1.70e-07 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.