FFCP PHASE1:Mm9::chr2:25324524..25324534,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=234|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:25324524..25324534,+|id=chr2:25324524..25324534,+|ontology_enrichment_celltype=CL:0002614!2.09e-11!3;CL:0002610!4.18e-11!3;CL:0000117!2.33e-08!23;CL:0000337!2.33e-08!23;CL:0000540!7.44e-07!33;CL:0000047!7.44e-07!33;CL:0000031!7.44e-07!33;CL:0000404!7.44e-07!33|ontology_enrichment_celltype_v019_2=CL:0002614,1.70e-39,3;CL:0000117,2.24e-12,23;CL:0000337,2.24e-12,23;CL:0002610,7.15e-11,3;CL:0000540,6.05e-09,33;CL:0000047,6.05e-09,33;CL:0000031,6.05e-09,33;CL:0000404,6.05e-09,33;CL:0000393,1.01e-07,39;CL:0000211,1.01e-07,39;CL:0002319,4.30e-07,43;CL:0000221,5.93e-07,44;CL:0000133,5.93e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002298!1.33e-20!6;UBERON:0002950!1.21e-14!4;UBERON:0001891!1.21e-14!4;UBERON:0009616!1.21e-14!4;UBERON:0001017!2.63e-14!73;UBERON:0005743!2.63e-14!73;UBERON:0000955!5.12e-14!50;UBERON:0006238!5.12e-14!50;UBERON:0000073!8.14e-14!75;UBERON:0001016!8.14e-14!75;UBERON:0002616!1.79e-12!49;UBERON:0000033!6.06e-12!63;UBERON:0004121!2.03e-11!102;UBERON:0000924!2.03e-11!102;UBERON:0006601!2.03e-11!102;UBERON:0002038!2.09e-11!3;UBERON:0002308!2.09e-11!3;UBERON:0009663!2.09e-11!3;UBERON:0009661!2.09e-11!3;UBERON:0006331!2.09e-11!3;UBERON:0000125!2.09e-11!3;UBERON:0001049!2.62e-11!52;UBERON:0005068!2.62e-11!52;UBERON:0006241!2.62e-11!52;UBERON:0007135!2.62e-11!52;UBERON:0004684!4.18e-11!3;UBERON:0002275!4.18e-11!3;UBERON:0002346!6.86e-10!71;UBERON:0003075!6.86e-10!71;UBERON:0007284!6.86e-10!71;UBERON:0002020!5.34e-08!34;UBERON:0007811!8.15e-08!86;UBERON:0001896!1.35e-07!2;UBERON:0005290!1.35e-07!2;UBERON:0010096!1.35e-07!2;UBERON:0000153!7.42e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.70e-39,3;UBERON:0009663,1.70e-39,3;UBERON:0009661,1.70e-39,3;UBERON:0000125,1.70e-39,3;UBERON:0002308,1.70e-39,3;UBERON:0002950,5.63e-30,4;UBERON:0001891,5.63e-30,4;UBERON:0009616,5.63e-30,4;UBERON:0010286,5.63e-30,4;UBERON:0002420,1.23e-15,8;UBERON:0007245,1.23e-15,8;UBERON:0010009,1.23e-15,8;UBERON:0010011,1.23e-15,8;UBERON:0000454,1.23e-15,8;UBERON:0004684,7.15e-11,3;UBERON:0002275,7.15e-11,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,1.10115880999389,0.638436690425939,0.46081959976873,0,0,0,0.558365998002762,2.25105044012672,6.1119299110724,0.294628585473668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748953197024114,0,0,0,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.468846746368813,0,0,0,0,0,0,0,0.283076530788832,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0.165458490457098,0,0,0,0.234714477291508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685082519770642,0,0.675022500231806,0,0.453142408984205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr2:25324524..25324534,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=234 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:25324524..25324534,+ | |||
|id=chr2:25324524..25324534,+ | |||
|ontology_enrichment_celltype=CL:0002614!2.09e-11!3;CL:0002610!4.18e-11!3;CL:0000117!2.33e-08!23;CL:0000337!2.33e-08!23;CL:0000540!7.44e-07!33;CL:0000047!7.44e-07!33;CL:0000031!7.44e-07!33;CL:0000404!7.44e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002614,1.70e-39,3;CL:0000117,2.24e-12,23;CL:0000337,2.24e-12,23;CL:0002610,7.15e-11,3;CL:0000540,6.05e-09,33;CL:0000047,6.05e-09,33;CL:0000031,6.05e-09,33;CL:0000404,6.05e-09,33;CL:0000393,1.01e-07,39;CL:0000211,1.01e-07,39;CL:0002319,4.30e-07,43;CL:0000221,5.93e-07,44;CL:0000133,5.93e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!1.33e-20!6;UBERON:0002950!1.21e-14!4;UBERON:0001891!1.21e-14!4;UBERON:0009616!1.21e-14!4;UBERON:0001017!2.63e-14!73;UBERON:0005743!2.63e-14!73;UBERON:0000955!5.12e-14!50;UBERON:0006238!5.12e-14!50;UBERON:0000073!8.14e-14!75;UBERON:0001016!8.14e-14!75;UBERON:0002616!1.79e-12!49;UBERON:0000033!6.06e-12!63;UBERON:0004121!2.03e-11!102;UBERON:0000924!2.03e-11!102;UBERON:0006601!2.03e-11!102;UBERON:0002038!2.09e-11!3;UBERON:0002308!2.09e-11!3;UBERON:0009663!2.09e-11!3;UBERON:0009661!2.09e-11!3;UBERON:0006331!2.09e-11!3;UBERON:0000125!2.09e-11!3;UBERON:0001049!2.62e-11!52;UBERON:0005068!2.62e-11!52;UBERON:0006241!2.62e-11!52;UBERON:0007135!2.62e-11!52;UBERON:0004684!4.18e-11!3;UBERON:0002275!4.18e-11!3;UBERON:0002346!6.86e-10!71;UBERON:0003075!6.86e-10!71;UBERON:0007284!6.86e-10!71;UBERON:0002020!5.34e-08!34;UBERON:0007811!8.15e-08!86;UBERON:0001896!1.35e-07!2;UBERON:0005290!1.35e-07!2;UBERON:0010096!1.35e-07!2;UBERON:0000153!7.42e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.70e-39,3;UBERON:0009663,1.70e-39,3;UBERON:0009661,1.70e-39,3;UBERON:0000125,1.70e-39,3;UBERON:0002308,1.70e-39,3;UBERON:0002950,5.63e-30,4;UBERON:0001891,5.63e-30,4;UBERON:0009616,5.63e-30,4;UBERON:0010286,5.63e-30,4;UBERON:0002420,1.23e-15,8;UBERON:0007245,1.23e-15,8;UBERON:0010009,1.23e-15,8;UBERON:0010011,1.23e-15,8;UBERON:0000454,1.23e-15,8;UBERON:0004684,7.15e-11,3;UBERON:0002275,7.15e-11,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,1.10115880999389,0.638436690425939,0.46081959976873,0,0,0,0.558365998002762,2.25105044012672,6.1119299110724,0.294628585473668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748953197024114,0,0,0,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.468846746368813,0,0,0,0,0,0,0,0.283076530788832,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0.165458490457098,0,0,0,0.234714477291508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685082519770642,0,0.675022500231806,0,0.453142408984205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:25324524..25324534,+ | |||
}} |
Revision as of 23:27, 13 September 2013
Short description: | p@chr2:25324524..25324534, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:25324524..25324534, + |
Coexpression cluster: | MCL_coexpression_mm9:234 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the substantia nigra | 1.70e-39 | 3 |
CNS neuron (sensu Vertebrata) | 2.24e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.24e-12 | 23 |
raphe nuclei neuron | 7.15e-11 | 3 |
neuron | 6.05e-09 | 33 |
neuronal stem cell | 6.05e-09 | 33 |
neuroblast | 6.05e-09 | 33 |
electrically signaling cell | 6.05e-09 | 33 |
electrically responsive cell | 1.01e-07 | 39 |
electrically active cell | 1.01e-07 | 39 |
neural cell | 4.30e-07 | 43 |
ectodermal cell | 5.93e-07 | 44 |
neurectodermal cell | 5.93e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 1.70e-39 | 3 |
telencephalic nucleus | 1.70e-39 | 3 |
midbrain nucleus | 1.70e-39 | 3 |
neural nucleus | 1.70e-39 | 3 |
nucleus of brain | 1.70e-39 | 3 |
regional part of midbrain | 5.63e-30 | 4 |
midbrain | 5.63e-30 | 4 |
presumptive midbrain | 5.63e-30 | 4 |
midbrain neural tube | 5.63e-30 | 4 |
basal ganglion | 1.23e-15 | 8 |
nuclear complex of neuraxis | 1.23e-15 | 8 |
aggregate regional part of brain | 1.23e-15 | 8 |
collection of basal ganglia | 1.23e-15 | 8 |
cerebral subcortex | 1.23e-15 | 8 |
raphe nuclei | 7.15e-11 | 3 |
reticular formation | 7.15e-11 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.