FFCP PHASE1:Mm9::chr19:5118345..5118358,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16594|HGNC=|UniProt=D3YXZ3|association_with_transcript=-45bp_to_ENSMUST00000025798_5end|description=CAGE_peak_2_at_Klc2_5end|id=chr19:5118345..5118358,-|ontology_enrichment_celltype=CL:0002321!2.16e-07!70;CL:0000220!2.16e-07!70|ontology_enrichment_celltype_v019_2=CL:0002321,2.32e-09,70;CL:0000117,2.68e-07,23;CL:0000337,2.68e-07,23;CL:0000221,4.68e-07,44;CL:0000133,4.68e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.46e-12!75;UBERON:0001016!3.46e-12!75;UBERON:0001017!5.00e-12!73;UBERON:0005743!5.00e-12!73;UBERON:0001049!1.31e-10!52;UBERON:0005068!1.31e-10!52;UBERON:0006241!1.31e-10!52;UBERON:0007135!1.31e-10!52;UBERON:0002616!2.52e-09!49;UBERON:0000955!2.97e-09!50;UBERON:0006238!2.97e-09!50;UBERON:0004121!3.44e-08!102;UBERON:0000924!3.44e-08!102;UBERON:0006601!3.44e-08!102;UBERON:0002346!5.53e-08!71;UBERON:0003075!5.53e-08!71;UBERON:0007284!5.53e-08!71;UBERON:0000033!1.02e-07!63;UBERON:0003076!2.06e-07!12;UBERON:0003057!2.06e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.34e-13,75;UBERON:0001017,2.72e-13,73;UBERON:0000073,5.78e-13,54;UBERON:0001049,2.09e-11,52;UBERON:0005068,2.09e-11,52;UBERON:0006241,2.09e-11,52;UBERON:0007135,2.09e-11,52;UBERON:0003076,1.06e-10,12;UBERON:0003057,1.06e-10,12;UBERON:0004121,1.86e-08,95;UBERON:0000924,1.86e-08,95;UBERON:0006601,1.86e-08,95;UBERON:0002346,3.04e-08,64;UBERON:0003075,3.04e-08,64;UBERON:0007284,3.04e-08,64;UBERON:0002616,1.79e-07,46;UBERON:0000955,3.64e-07,47;UBERON:0006238,3.64e-07,47;UBERON:0002240,5.32e-07,6;UBERON:0005174,5.32e-07,6;UBERON:0001137,5.32e-07,6;UBERON:0002020,7.43e-07,34|phase1_expression=0.480446541314382,1.39590163055744,2.72999543633722,1.51232105653415,2.00358291978539,2.01455126294268,2.10251376535973,0.129123323441576,0.140788722151667,0.468129052643987,0.34243593645101,0.558405112967355,0.171200729931206,0.0874204024189974,0,0.202475267389826,0,0.157731082679119,0.411343300817216,0,1.87095238332354,0.198581902401771,0,1.27993938234725,0.22940928106717,1.14846392823004,0.430761996159075,0.646413698057667,0.950117097281869,0.504060259519861,0.665191531965914,0,0,0,0,0,0.612508068787107,0,0,0,0,0,0,1.38486499773135,1.4192770370732,0.917733760808408,1.56478268869608,0.65407546914134,1.5378032791413,0.972149495371417,0.979904951377538,0,0.335565212115473,1.45072428402269,1.00828139742739,0.771778308107841,0.286533439938757,0.515672092277442,1.41621522601718,1.05798195854407,0,2.03306719241479,2.66788438833342,0.449949858640699,2.96659908770092,0,1.79760066311043,1.92109152660777,0.414758449233911,0.945041568321835,0.210324961351382,2.57085885963423,2.87129103237098,0.489963196859816,0.0958454710182364,0.919218786610021,4.40463523997555,5.36286819957788,4.45458946443106,1.05509030184155,1.55528994124096,0.52091337055676,5.30447698102624,3.37657566019008,2.75036845998258,1.76777151284201,2.27794689278565,2.79599168737951,1.13589289999776,0.529000920747499,1.15945795480671,0,0.679971333707751,1.07940638327563,0,0.448026887097336,1.54488862144927,1.36344258062446,1.55871602761721,0.35333957451034,1.12674735821344,0,5.09610479413291,0,1.73192832808971,1.01343946190039,0.505524445014783,0.34255163915718,0,0.593768556259299,0.173485326766136,0,1.61430848079241,0.301445281105245,0.23517741427141,0.879666139307728,0.247194967734374,0.289198713839823,0,0.485300549842228,0,0.484875253135222,0,4.09893115816166,5.02672096352292,0,0,0,0.254140454146129,3.89455662452539,0.915001205637253,0.251308704225729,1.73824320192276,3.83573185995496,5.61027720310812,2.43361894601636,0.407357455401265,0.497627882440372,0.505445516867349,0,0.910843100738926,0.919608417733892,0.360124259610698,0.90422890701429,0.204109497453984,0.384341160854549,0.749613796477831,0.517406741478031,0.646703978798527,0.378212160335639,0.703804496655795,0.657587197282725,0.278047249225598,0.696504333044333,0.205782136407943,1.39323986772945,0,0,0,0.207125772535502,0.234526059981096,0.900310307305074,0.23674473558521,0.590292695242212,0.308534225774757,0,0,0.233530684734339,0.658239399653922,0.985004784474571,0.486412857275134,1.16959989940266,0.878200461164203,0.939444931322602,2.73376933133365,0.205809224758569,0.660837565967596,0.793351699990633,0.426576501070468,0.464473343720877,0.902072229254653,0,1.33426826306922,0.760902504450237,0,0.658795818896044,0,0.198956472041151,0.974820435595601,0,0.216138049874694,0.597423819763102,1.13800740571849,0.342745537829186,1.1270773567308,1.22190796707189,0.969762435838129,0.841629838683823,1.01178459398812,1.62371162777562,1.09899109488962,1.60416313098341,0.889357881261447,0.333690211432188,0.589676985339609,0,0.202860121388503,0.72353147925725,0,0.287696137450811,0,0.274561413188081,1.43768206527355,0.372140947668503,0.624075346229121,0.252578877947112,0.358794827043824,0.964887042726734,0.739012760666419,0.947457058852424,0.488894929326078,1.01847051465113,0,0.670025029767263,0.952174563544055,0.585400943573396,0.472905432318573,0.221464689648775,0.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| ||
|EntrezGene=16594 | |||
|HGNC= | |||
|UniProt=D3YXZ3 | |||
|association_with_transcript=-45bp_to_ENSMUST00000025798_5end | |||
|description=CAGE_peak_2_at_Klc2_5end | |||
|id=chr19:5118345..5118358,- | |||
|ontology_enrichment_celltype=CL:0002321!2.16e-07!70;CL:0000220!2.16e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.32e-09,70;CL:0000117,2.68e-07,23;CL:0000337,2.68e-07,23;CL:0000221,4.68e-07,44;CL:0000133,4.68e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.46e-12!75;UBERON:0001016!3.46e-12!75;UBERON:0001017!5.00e-12!73;UBERON:0005743!5.00e-12!73;UBERON:0001049!1.31e-10!52;UBERON:0005068!1.31e-10!52;UBERON:0006241!1.31e-10!52;UBERON:0007135!1.31e-10!52;UBERON:0002616!2.52e-09!49;UBERON:0000955!2.97e-09!50;UBERON:0006238!2.97e-09!50;UBERON:0004121!3.44e-08!102;UBERON:0000924!3.44e-08!102;UBERON:0006601!3.44e-08!102;UBERON:0002346!5.53e-08!71;UBERON:0003075!5.53e-08!71;UBERON:0007284!5.53e-08!71;UBERON:0000033!1.02e-07!63;UBERON:0003076!2.06e-07!12;UBERON:0003057!2.06e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.34e-13,75;UBERON:0001017,2.72e-13,73;UBERON:0000073,5.78e-13,54;UBERON:0001049,2.09e-11,52;UBERON:0005068,2.09e-11,52;UBERON:0006241,2.09e-11,52;UBERON:0007135,2.09e-11,52;UBERON:0003076,1.06e-10,12;UBERON:0003057,1.06e-10,12;UBERON:0004121,1.86e-08,95;UBERON:0000924,1.86e-08,95;UBERON:0006601,1.86e-08,95;UBERON:0002346,3.04e-08,64;UBERON:0003075,3.04e-08,64;UBERON:0007284,3.04e-08,64;UBERON:0002616,1.79e-07,46;UBERON:0000955,3.64e-07,47;UBERON:0006238,3.64e-07,47;UBERON:0002240,5.32e-07,6;UBERON:0005174,5.32e-07,6;UBERON:0001137,5.32e-07,6;UBERON:0002020,7.43e-07,34 | |||
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| |||
|short_description=p2@Klc2 | |||
}} | |||
Revision as of 17:59, 13 September 2013
| Short description: | p2@Klc2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Klc2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -45bp_to_ENSMUST00000025798_5end |
| EntrezGene: | Klc2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| embryonic cell | 2.32e-09 | 70 |
| CNS neuron (sensu Vertebrata) | 2.68e-07 | 23 |
| neuroblast (sensu Vertebrata) | 2.68e-07 | 23 |
| ectodermal cell | 4.68e-07 | 44 |
| neurectodermal cell | 4.68e-07 | 44 |
| Ontology term | p-value | n |
|---|---|---|
| nervous system | 2.34e-13 | 75 |
| central nervous system | 2.72e-13 | 73 |
| regional part of nervous system | 5.78e-13 | 54 |
| neural tube | 2.09e-11 | 52 |
| neural rod | 2.09e-11 | 52 |
| future spinal cord | 2.09e-11 | 52 |
| neural keel | 2.09e-11 | 52 |
| posterior neural tube | 1.06e-10 | 12 |
| chordal neural plate | 1.06e-10 | 12 |
| ectoderm-derived structure | 1.86e-08 | 95 |
| ectoderm | 1.86e-08 | 95 |
| presumptive ectoderm | 1.86e-08 | 95 |
| neurectoderm | 3.04e-08 | 64 |
| neural plate | 3.04e-08 | 64 |
| presumptive neural plate | 3.04e-08 | 64 |
| regional part of brain | 1.79e-07 | 46 |
| brain | 3.64e-07 | 47 |
| future brain | 3.64e-07 | 47 |
| spinal cord | 5.32e-07 | 6 |
| dorsal region element | 5.32e-07 | 6 |
| dorsum | 5.32e-07 | 6 |
| gray matter | 7.43e-07 | 34 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
