FFCP PHASE1:Mm9::chr6:83267583..83267596,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=17768|HGNC=|MCL_coexpression_id=3577|UniProt=P18155|association_with_transcript=1bp_to_NM_008638,uc009cne.2_5end|description=CAGE_peak_2_at_Mthfd2_5end|id=chr6:83267583..83267596,-|ontology_enrichment_celltype=CL:0000034!2.37e-11!97;CL:0000723!1.26e-09!91;CL:0000048!1.26e-09!91;CL:0000144!1.74e-08!121;CL:0000012!1.74e-08!121;CL:0000548!5.52e-08!115;CL:0000004!5.52e-08!115;CL:0000255!5.52e-08!115;CL:0002371!7.88e-08!118|ontology_enrichment_celltype_v019_2=CL:0000034,2.31e-13,97;CL:0000723,1.64e-11,91;CL:0000048,1.64e-11,91;CL:0002031,8.93e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=|phase1_expression=1.60148847104794,0,0,0.60492842261366,1.50268718983904,0.33575854382378,0,0.774739940649458,5.63154888606667,4.44722600011788,11.9852577757853,9.25357044345902,1.19840510951844,1.22388563386596,2.33176833270964,3.64455481301687,11.8925519281785,1.10411757875383,1.09691546884591,0.84877930359606,0.255129870453209,1.88652807281682,3.6567970479451,0.47997726838022,1.14704640533585,0,0,0.430942465371778,0.380046838912748,0.504060259519861,0.886922042621219,1.90509202037889,3.69038872550742,0,1.1554064790051,1.32987716286794,1.02084678131185,0.837063261473815,0.7813353445238,0.523523743973798,0.588231488031014,1.36609096991689,1.94204141212461,1.88845226963366,1.62203089951223,1.65192076945513,1.56478268869608,0.65407546914134,0.219686182734472,0.972149495371417,0.419959264876088,0,0.838913030288682,1.45072428402269,0,3.8588915405392,2.86533439938757,3.09403255366465,0.606949382578793,1.05798195854407,1.90149421051854,1.0165335962074,1.77858959222228,0.899899717281399,1.97773272513395,1.4209602298922,0.599200221036809,0,0.622137673850866,0.540023753326763,0.630974884054146,1.14260393761521,0.662605622854841,0.367472397644862,0.670918297127655,1.83843757322004,1.10115880999389,1.40456071893706,1.99688493233117,1.45074916503213,1.00636407962651,2.08365348222704,0.837548997004143,1.12552522006336,1.83357897332172,1.47314292736834,0.427115042397309,1.3047961207771,4.08921443999194,2.87171928405785,0,0,1.3599426674155,1.07940638327563,0,0,0.140444420131752,0.852151612890289,1.55871602761721,1.41335829804136,0.563373679106722,5.13305909657271,0,0,2.59789249213457,2.53359865475099,1.51657333504435,0.45673551887624,1.55362730188303,1.03909497345377,2.08182392119363,1.52232739156071,2.53677046981664,1.65794904607885,0.940709657085638,1.0053327306374,0.741584903203122,0.144599356919912,3.5384422077995,1.13236794963186,1.10420759230197,0.484875253135222,0,1.46390398505774,1.04723353406728,0.255457055208591,2.87556298814209,0.599902730993408,1.14363204365758,0.898743836428936,0.915001205637253,1.13088916901578,0,0.767146371990992,0.83115217823824,0,0.305518091550949,0.622034853050465,1.0108910337347,0.631325567659422,0.650602214813519,0.459804208866946,0.900310649026746,0.452114453507145,0.544291993210623,0.384341160854549,0.749613796477831,0.517406741478031,1.5089759505299,0.756424320671277,0.703804496655795,0.876782929710299,0.278047249225598,0.696504333044333,0.411564272815887,0,0,0.51469581422943,2.27330799516474,0.207125772535502,0.469052119962192,0.180062061461015,0.946978942340841,0.393528463494808,0.462801338662135,0.465067889500816,0.268273401399619,0.350296027101508,0.658239399653922,0.492502392237286,0.243206428637567,0.146199987425332,0,0,0,0.823236899034275,0,0.793351699990633,0.213288250535234,0.464473343720877,0.257734922644187,0.605050573870028,0.444756087689741,0.760902504450237,1.42358718463353,0.494096864172033,0.251335208800269,0.795825888164603,0,0,0.216138049874694,0.597423819763102,0.569003702859245,0.685491075658373,0,0.814605311381257,0.775809948670503,0.210407459670956,0.252946148497029,0.147610147979602,0.627994911365499,0.863780147452604,0,4.00428253718626,2.16214894624523,3.14806957338795,2.43432145666204,1.4470629585145,1.52775511068852,1.15078454980324,0.324270453550071,0.823684239564244,0,0.744281895337007,0,0.505157755894224,0.179397413521912,0,0.739012760666419,0.757965647081939,1.46668478797823,0.509235257325564,0.469380496577004,0.335012514883631,0,0,0.630540576424764,0.44292937929755,0.637819074629948,0.327726629431476,0.345369963731791,0,3.01582567878545,2.17562273527484,0,0.275936746304732,2.0871576698413,2.10981035865966,3.44263385291018,0.504941854408746,1.26203287766503,1.17131623288992,1.07711698866399,1.43381278771531,0.668396022247182,0.849229592366497,1.61924280669958,1.75353514746787,1.18586333383957,0,0.425820255624806,0.534196811001766,0.162886959353576,0.329940245945071,2.65490276679926,0.485561272309963,0,0.943025398779491,1.18120757152309,0.614870295887855,1.03371317267288,0.727067458955011,1.78248689192361,2.21225730555071,5.27093042874994,4.12542172992747,1.36175842301515,0.900305470156551,0.646793418913773,0.643011105094777,0.177340233642274,0.713475270408282,0.822745103010605,0.608929898229199,2.11204537257339,0.63549621259146,2.20528398054962,0.32977250588296,0.161464426695906,0.784068024066026,0.835606408021955,0.164140899745061,0.874442509889552,1.66882771809459,4.27177201994632,1.03193433981611,0.740778109478847,2.26042148405629,1.77702496037333,2.0590035588587,1.86976272993241,0.839708713941948,1.93479963326193,0,0.632671987162271,0.609958401380546,0.756037385752609,1.46361807210128,0.655087691238533,1.07891477107857,0.41326727862668,0.26175594198403,0.648074866458964,1.24267862617385,1.12738587736838,0.897099276263873,1.32366792365678,0.777804753376191,1.03327858782185,0.168956125490778,0.704143431874524,1.43224823328345,2.09718688851422,0.724752362478018,1.44015003128933,0.632022241256357,1.01362607645082,0.924398614483445,1.42912905275575,1.61124026100733,0.993406773906324,1.08175904567972,0.590758108698309,1.00966449948148,0.914481679859998,0.705783295957884,0.779663045918019,0.673482891482306,0.467507608726276,0.680191150845634,2.88581739386284,2.6017018416748,1.00730769818447,0.19318959403219,0.375364950902364,1.09890974560359,0.214368379079066,1.00314420807073,0,0.920650473014354,0.572895513439397,0.171853182343688,0.685082519770642,0,0,0,0.453142408984205,0.51776031175182,0.726511433089237,0,1.36586884603307,0.729320151204882,0.628839487883947,0.735374033800057,0.666740183404846,0.618105171716683,0.320919209591815,1.76888048234658,0.760437899670719,0.377252682772152,0.936415074698824,0.640251524048693,0.631790158511746,0.476293691283074,1.15884325944855,0.964546102318525,1.23625770240992,0.588795680537589,1.02860775715625,0.70990322463735,0.238436189947321,0.290692833264657,0.752875043322645,0.676916863133412,0.365855945745545,0.789209134313529,0.407412341537585,0.561142271657738,1.18635018124174,0.985044823755635,0.818462086339379,0.619747364743864,1.15743966588685,0.499621155875892,0.233931608445408,0,0.382576664137687,0.441182838239031,0.231867835620421|short_description=p2@Mthfd2}} | ||
|EntrezGene=17768 | |||
|HGNC= | |||
|MCL_coexpression_id=3577 | |||
|UniProt=P18155 | |||
|association_with_transcript=1bp_to_NM_008638,uc009cne.2_5end | |||
|description=CAGE_peak_2_at_Mthfd2_5end | |||
|id=chr6:83267583..83267596,- | |||
|ontology_enrichment_celltype=CL:0000034!2.37e-11!97;CL:0000723!1.26e-09!91;CL:0000048!1.26e-09!91;CL:0000144!1.74e-08!121;CL:0000012!1.74e-08!121;CL:0000548!5.52e-08!115;CL:0000004!5.52e-08!115;CL:0000255!5.52e-08!115;CL:0002371!7.88e-08!118 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,2.31e-13,97;CL:0000723,1.64e-11,91;CL:0000048,1.64e-11,91;CL:0002031,8.93e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=1.60148847104794,0,0,0.60492842261366,1.50268718983904,0.33575854382378,0,0.774739940649458,5.63154888606667,4.44722600011788,11.9852577757853,9.25357044345902,1.19840510951844,1.22388563386596,2.33176833270964,3.64455481301687,11.8925519281785,1.10411757875383,1.09691546884591,0.84877930359606,0.255129870453209,1.88652807281682,3.6567970479451,0.47997726838022,1.14704640533585,0,0,0.430942465371778,0.380046838912748,0.504060259519861,0.886922042621219,1.90509202037889,3.69038872550742,0,1.1554064790051,1.32987716286794,1.02084678131185,0.837063261473815,0.7813353445238,0.523523743973798,0.588231488031014,1.36609096991689,1.94204141212461,1.88845226963366,1.62203089951223,1.65192076945513,1.56478268869608,0.65407546914134,0.219686182734472,0.972149495371417,0.419959264876088,0,0.838913030288682,1.45072428402269,0,3.8588915405392,2.86533439938757,3.09403255366465,0.606949382578793,1.05798195854407,1.90149421051854,1.0165335962074,1.77858959222228,0.899899717281399,1.97773272513395,1.4209602298922,0.599200221036809,0,0.622137673850866,0.540023753326763,0.630974884054146,1.14260393761521,0.662605622854841,0.367472397644862,0.670918297127655,1.83843757322004,1.10115880999389,1.40456071893706,1.99688493233117,1.45074916503213,1.00636407962651,2.08365348222704,0.837548997004143,1.12552522006336,1.83357897332172,1.47314292736834,0.427115042397309,1.3047961207771,4.08921443999194,2.87171928405785,0,0,1.3599426674155,1.07940638327563,0,0,0.140444420131752,0.852151612890289,1.55871602761721,1.41335829804136,0.563373679106722,5.13305909657271,0,0,2.59789249213457,2.53359865475099,1.51657333504435,0.45673551887624,1.55362730188303,1.03909497345377,2.08182392119363,1.52232739156071,2.53677046981664,1.65794904607885,0.940709657085638,1.0053327306374,0.741584903203122,0.144599356919912,3.5384422077995,1.13236794963186,1.10420759230197,0.484875253135222,0,1.46390398505774,1.04723353406728,0.255457055208591,2.87556298814209,0.599902730993408,1.14363204365758,0.898743836428936,0.915001205637253,1.13088916901578,0,0.767146371990992,0.83115217823824,0,0.305518091550949,0.622034853050465,1.0108910337347,0.631325567659422,0.650602214813519,0.459804208866946,0.900310649026746,0.452114453507145,0.544291993210623,0.384341160854549,0.749613796477831,0.517406741478031,1.5089759505299,0.756424320671277,0.703804496655795,0.876782929710299,0.278047249225598,0.696504333044333,0.411564272815887,0,0,0.51469581422943,2.27330799516474,0.207125772535502,0.469052119962192,0.180062061461015,0.946978942340841,0.393528463494808,0.462801338662135,0.465067889500816,0.268273401399619,0.350296027101508,0.658239399653922,0.492502392237286,0.243206428637567,0.146199987425332,0,0,0,0.823236899034275,0,0.793351699990633,0.213288250535234,0.464473343720877,0.257734922644187,0.605050573870028,0.444756087689741,0.760902504450237,1.42358718463353,0.494096864172033,0.251335208800269,0.795825888164603,0,0,0.216138049874694,0.597423819763102,0.569003702859245,0.685491075658373,0,0.814605311381257,0.775809948670503,0.210407459670956,0.252946148497029,0.147610147979602,0.627994911365499,0.863780147452604,0,4.00428253718626,2.16214894624523,3.14806957338795,2.43432145666204,1.4470629585145,1.52775511068852,1.15078454980324,0.324270453550071,0.823684239564244,0,0.744281895337007,0,0.505157755894224,0.179397413521912,0,0.739012760666419,0.757965647081939,1.46668478797823,0.509235257325564,0.469380496577004,0.335012514883631,0,0,0.630540576424764,0.44292937929755,0.637819074629948,0.327726629431476,0.345369963731791,0,3.01582567878545,2.17562273527484,0,0.275936746304732,2.0871576698413,2.10981035865966,3.44263385291018,0.504941854408746,1.26203287766503,1.17131623288992,1.07711698866399,1.43381278771531,0.668396022247182,0.849229592366497,1.61924280669958,1.75353514746787,1.18586333383957,0,0.425820255624806,0.534196811001766,0.162886959353576,0.329940245945071,2.65490276679926,0.485561272309963,0,0.943025398779491,1.18120757152309,0.614870295887855,1.03371317267288,0.727067458955011,1.78248689192361,2.21225730555071,5.27093042874994,4.12542172992747,1.36175842301515,0.900305470156551,0.646793418913773,0.643011105094777,0.177340233642274,0.713475270408282,0.822745103010605,0.608929898229199,2.11204537257339,0.63549621259146,2.20528398054962,0.32977250588296,0.161464426695906,0.784068024066026,0.835606408021955,0.164140899745061,0.874442509889552,1.66882771809459,4.27177201994632,1.03193433981611,0.740778109478847,2.26042148405629,1.77702496037333,2.0590035588587,1.86976272993241,0.839708713941948,1.93479963326193,0,0.632671987162271,0.609958401380546,0.756037385752609,1.46361807210128,0.655087691238533,1.07891477107857,0.41326727862668,0.26175594198403,0.648074866458964,1.24267862617385,1.12738587736838,0.897099276263873,1.32366792365678,0.777804753376191,1.03327858782185,0.168956125490778,0.704143431874524,1.43224823328345,2.09718688851422,0.724752362478018,1.44015003128933,0.632022241256357,1.01362607645082,0.924398614483445,1.42912905275575,1.61124026100733,0.993406773906324,1.08175904567972,0.590758108698309,1.00966449948148,0.914481679859998,0.705783295957884,0.779663045918019,0.673482891482306,0.467507608726276,0.680191150845634,2.88581739386284,2.6017018416748,1.00730769818447,0.19318959403219,0.375364950902364,1.09890974560359,0.214368379079066,1.00314420807073,0,0.920650473014354,0.572895513439397,0.171853182343688,0.685082519770642,0,0,0,0.453142408984205,0.51776031175182,0.726511433089237,0,1.36586884603307,0.729320151204882,0.628839487883947,0.735374033800057,0.666740183404846,0.618105171716683,0.320919209591815,1.76888048234658,0.760437899670719,0.377252682772152,0.936415074698824,0.640251524048693,0.631790158511746,0.476293691283074,1.15884325944855,0.964546102318525,1.23625770240992,0.588795680537589,1.02860775715625,0.70990322463735,0.238436189947321,0.290692833264657,0.752875043322645,0.676916863133412,0.365855945745545,0.789209134313529,0.407412341537585,0.561142271657738,1.18635018124174,0.985044823755635,0.818462086339379,0.619747364743864,1.15743966588685,0.499621155875892,0.233931608445408,0,0.382576664137687,0.441182838239031,0.231867835620421 | |||
|short_description=p2@Mthfd2 | |||
}} | |||
Revision as of 10:44, 14 September 2013
| Short description: | p2@Mthfd2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Mthfd2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3577 |
| Association with transcript: | 1bp_to_NM_008638, uc009cne.2_5end |
| EntrezGene: | Mthfd2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| stem cell | 2.31e-13 | 97 |
| somatic stem cell | 1.64e-11 | 91 |
| multi fate stem cell | 1.64e-11 | 91 |
| hematopoietic lineage restricted progenitor cell | 8.93e-07 | 25 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
