FFCP PHASE1:Mm9::chr3:51364738..51364797,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=73251|HGNC=|MCL_coexpression_id=1|UniProt=Q8VHL1|association_with_transcript=0bp_to_NM_080793,uc008peb.1_5end|description=CAGE_peak_2_at_Setd7_5end|id=chr3:51364738..51364797,-|ontology_enrichment_celltype=CL:0000117!3.27e-07!23;CL:0000337!3.27e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.03e-07,23;CL:0000337,1.03e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.46e-23!63;UBERON:0004121!1.47e-23!102;UBERON:0000924!1.47e-23!102;UBERON:0006601!1.47e-23!102;UBERON:0001017!1.42e-20!73;UBERON:0005743!1.42e-20!73;UBERON:0000955!1.88e-20!50;UBERON:0006238!1.88e-20!50;UBERON:0000073!2.13e-20!75;UBERON:0001016!2.13e-20!75;UBERON:0002616!7.41e-20!49;UBERON:0001049!5.51e-19!52;UBERON:0005068!5.51e-19!52;UBERON:0006241!5.51e-19!52;UBERON:0007135!5.51e-19!52;UBERON:0003056!1.03e-17!49;UBERON:0007811!1.69e-17!86;UBERON:0002346!2.00e-17!71;UBERON:0003075!2.00e-17!71;UBERON:0007284!2.00e-17!71;UBERON:0003080!2.27e-16!40;UBERON:0000153!5.05e-16!94;UBERON:0002780!8.52e-16!39;UBERON:0001890!8.52e-16!39;UBERON:0006240!8.52e-16!39;UBERON:0002020!1.57e-12!34;UBERON:0002791!4.71e-12!29;UBERON:0003528!4.71e-12!29;UBERON:0001893!4.71e-12!29;UBERON:0000956!1.79e-09!21;UBERON:0001869!1.79e-09!21;UBERON:0000203!1.79e-09!21;UBERON:0000064!5.54e-09!99;UBERON:0002619!2.99e-08!17;UBERON:0002021!2.34e-07!10;UBERON:0000411!2.34e-07!10;UBERON:0001950!2.34e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.13e-27,95;UBERON:0000924,5.13e-27,95;UBERON:0006601,5.13e-27,95;UBERON:0010371,1.46e-23,73;UBERON:0000073,1.58e-21,54;UBERON:0001017,3.80e-21,73;UBERON:0001016,5.69e-21,75;UBERON:0002346,6.11e-21,64;UBERON:0003075,6.11e-21,64;UBERON:0007284,6.11e-21,64;UBERON:0001049,6.22e-20,52;UBERON:0005068,6.22e-20,52;UBERON:0006241,6.22e-20,52;UBERON:0007135,6.22e-20,52;UBERON:0000955,3.39e-19,47;UBERON:0006238,3.39e-19,47;UBERON:0003056,3.90e-19,49;UBERON:0002616,1.44e-18,46;UBERON:0003080,1.12e-17,40;UBERON:0002780,4.75e-17,39;UBERON:0001890,4.75e-17,39;UBERON:0006240,4.75e-17,39;UBERON:0010314,3.16e-14,92;UBERON:0002020,1.70e-13,34;UBERON:0003528,5.61e-13,29;UBERON:0002791,5.61e-13,29;UBERON:0001893,5.61e-13,29;UBERON:0000956,3.59e-10,21;UBERON:0001869,3.59e-10,21;UBERON:0000203,3.59e-10,21;UBERON:0002619,7.68e-09,17;UBERON:0002021,7.19e-08,10;UBERON:0000411,7.19e-08,10;UBERON:0001950,7.19e-08,10|phase1_expression=3.36312578920067,3.14077866875425,3.63999391511629,2.11724947914781,4.00716583957078,2.35030980676646,1.86890112476421,1.80772652818207,2.956563165185,7.0219357896598,0.68487187290202,0.0797721589953364,1.36960583944965,2.18551006047494,0,0.202475267389826,0,0.315462165358238,0.274228867211478,0.42438965179803,3.656861476496,1.88652807281682,0.522399578277871,0.799962113967033,1.14704640533585,4.01962374880514,4.73838195774982,1.72376986148711,0.950117097281869,1.76421090831952,0.886922042621219,0.635030673459631,0.61506478758457,0,0,0.332469290716985,1.42918549383658,0.418531630736908,0,0,1.76469446409304,2.04913645487534,1.94204141212461,0.125896817975577,0.912392380975631,0.917733760808408,0.782391344348039,0.872100625521786,1.09843091367236,1.74986909166855,1.67983705950435,0,0.167782606057736,0,0.672187598284928,0.771778308107841,0.85960031981627,2.06268836910977,2.42779753031517,1.5869729378161,1.90149421051854,1.35537812827653,0,0.899899717281399,0.988866362566974,1.4209602298922,2.09720077362883,1.92109152660777,3.00699875694585,2.70011876663381,1.68259969081106,2.85650984403804,2.42955395046775,2.81728838194394,3.06705507258356,1.83843757322004,16.5173821499083,23.8775322219301,20.7368819895929,1.58263545276233,2.28719109006024,1.56274011167028,13.959149950069,6.19038871034848,12.9878510610289,2.06240009831567,1.56608848879013,1.3047961207771,1.51452386666368,1.36028808192214,2.31891590961342,0,2.719885334831,0.539703191637817,0,0,3.65155492342555,0.170430322578058,0.259786004602869,0,2.11265129665021,0,0,0,0.432982082022428,0.253359865475099,1.01104889002957,0.5709193985953,0.258937883647172,1.7813056687779,0.693941307064543,0.913396434936424,0.691846491768175,0.60289056221049,0.940709657085638,0.753999547978053,3.46072954828123,0.578397427679647,3.5384422077995,3.23533699894818,0.883366073841574,0.969750506270444,1.86391761218122,17.2740670236813,20.9446706813455,1.78819938646014,2.27648736561249,1.19980546198682,1.65191295194984,8.98743836428936,15.0975198930147,2.1361239859187,10.6032835317289,12.5300574091862,10.5971902725376,9.89671704713322,1.32391173005411,1.24406970610093,0.252722758433675,2.31486041475121,1.56144531555244,1.37941262660084,2.34080768746954,1.50704817835715,2.58538696775046,1.7935920839879,2.24884138943349,4.65666067330228,0.646703978798527,0.567318240503458,1.75951124163949,0.876782929710299,0.834141747676794,1.74126083261083,2.88094990971121,0.59710280045548,0,2.05878325691772,0.852490498186778,2.07125772535502,1.17263029990548,1.62055855314913,1.18372367792605,0.787056926989615,1.54267112887378,0.23253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| ||
|EntrezGene=73251 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8VHL1 | |||
|association_with_transcript=0bp_to_NM_080793,uc008peb.1_5end | |||
|description=CAGE_peak_2_at_Setd7_5end | |||
|id=chr3:51364738..51364797,- | |||
|ontology_enrichment_celltype=CL:0000117!3.27e-07!23;CL:0000337!3.27e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.03e-07,23;CL:0000337,1.03e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.46e-23!63;UBERON:0004121!1.47e-23!102;UBERON:0000924!1.47e-23!102;UBERON:0006601!1.47e-23!102;UBERON:0001017!1.42e-20!73;UBERON:0005743!1.42e-20!73;UBERON:0000955!1.88e-20!50;UBERON:0006238!1.88e-20!50;UBERON:0000073!2.13e-20!75;UBERON:0001016!2.13e-20!75;UBERON:0002616!7.41e-20!49;UBERON:0001049!5.51e-19!52;UBERON:0005068!5.51e-19!52;UBERON:0006241!5.51e-19!52;UBERON:0007135!5.51e-19!52;UBERON:0003056!1.03e-17!49;UBERON:0007811!1.69e-17!86;UBERON:0002346!2.00e-17!71;UBERON:0003075!2.00e-17!71;UBERON:0007284!2.00e-17!71;UBERON:0003080!2.27e-16!40;UBERON:0000153!5.05e-16!94;UBERON:0002780!8.52e-16!39;UBERON:0001890!8.52e-16!39;UBERON:0006240!8.52e-16!39;UBERON:0002020!1.57e-12!34;UBERON:0002791!4.71e-12!29;UBERON:0003528!4.71e-12!29;UBERON:0001893!4.71e-12!29;UBERON:0000956!1.79e-09!21;UBERON:0001869!1.79e-09!21;UBERON:0000203!1.79e-09!21;UBERON:0000064!5.54e-09!99;UBERON:0002619!2.99e-08!17;UBERON:0002021!2.34e-07!10;UBERON:0000411!2.34e-07!10;UBERON:0001950!2.34e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.13e-27,95;UBERON:0000924,5.13e-27,95;UBERON:0006601,5.13e-27,95;UBERON:0010371,1.46e-23,73;UBERON:0000073,1.58e-21,54;UBERON:0001017,3.80e-21,73;UBERON:0001016,5.69e-21,75;UBERON:0002346,6.11e-21,64;UBERON:0003075,6.11e-21,64;UBERON:0007284,6.11e-21,64;UBERON:0001049,6.22e-20,52;UBERON:0005068,6.22e-20,52;UBERON:0006241,6.22e-20,52;UBERON:0007135,6.22e-20,52;UBERON:0000955,3.39e-19,47;UBERON:0006238,3.39e-19,47;UBERON:0003056,3.90e-19,49;UBERON:0002616,1.44e-18,46;UBERON:0003080,1.12e-17,40;UBERON:0002780,4.75e-17,39;UBERON:0001890,4.75e-17,39;UBERON:0006240,4.75e-17,39;UBERON:0010314,3.16e-14,92;UBERON:0002020,1.70e-13,34;UBERON:0003528,5.61e-13,29;UBERON:0002791,5.61e-13,29;UBERON:0001893,5.61e-13,29;UBERON:0000956,3.59e-10,21;UBERON:0001869,3.59e-10,21;UBERON:0000203,3.59e-10,21;UBERON:0002619,7.68e-09,17;UBERON:0002021,7.19e-08,10;UBERON:0000411,7.19e-08,10;UBERON:0001950,7.19e-08,10 | |||
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| |||
|short_description=p2@Setd7 | |||
}} |
Revision as of 02:15, 14 September 2013
Short description: | p2@Setd7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Setd7_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_NM_080793, uc008peb.1_5end |
EntrezGene: | Setd7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.03e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.03e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 5.13e-27 | 95 |
ectoderm | 5.13e-27 | 95 |
presumptive ectoderm | 5.13e-27 | 95 |
ecto-epithelium | 1.46e-23 | 73 |
regional part of nervous system | 1.58e-21 | 54 |
central nervous system | 3.80e-21 | 73 |
nervous system | 5.69e-21 | 75 |
neurectoderm | 6.11e-21 | 64 |
neural plate | 6.11e-21 | 64 |
presumptive neural plate | 6.11e-21 | 64 |
neural tube | 6.22e-20 | 52 |
neural rod | 6.22e-20 | 52 |
future spinal cord | 6.22e-20 | 52 |
neural keel | 6.22e-20 | 52 |
brain | 3.39e-19 | 47 |
future brain | 3.39e-19 | 47 |
pre-chordal neural plate | 3.90e-19 | 49 |
regional part of brain | 1.44e-18 | 46 |
anterior neural tube | 1.12e-17 | 40 |
regional part of forebrain | 4.75e-17 | 39 |
forebrain | 4.75e-17 | 39 |
future forebrain | 4.75e-17 | 39 |
structure with developmental contribution from neural crest | 3.16e-14 | 92 |
gray matter | 1.70e-13 | 34 |
brain grey matter | 5.61e-13 | 29 |
regional part of telencephalon | 5.61e-13 | 29 |
telencephalon | 5.61e-13 | 29 |
cerebral cortex | 3.59e-10 | 21 |
cerebral hemisphere | 3.59e-10 | 21 |
pallium | 3.59e-10 | 21 |
regional part of cerebral cortex | 7.68e-09 | 17 |
occipital lobe | 7.19e-08 | 10 |
visual cortex | 7.19e-08 | 10 |
neocortex | 7.19e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.