FFCP PHASE1:Mm9::chr8:63471986..63472044,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18004|HGNC=|MCL_coexpression_id=933|UniProt=P51954,B7ZWK0,Q8BSB6,Q8CD72,B2RXX0,B2RXQ4|association_with_transcript=0bp_to_ENSMUST00000034065,ENSMUST00000120689,ENSMUST00000125717,ENSMUST00000140444,ENSMUST00000154313,ENSMUST00000155664,NM_175089,uc009ltr.1,uc009lts.1,uc009ltt.1,uc009ltu.1,uc009ltv.1,uc012ged.1,uc012gee.1,uc012gef.1_5end|description=CAGE_peak_1_at_Nek1_5end|id=chr8:63471986..63472044,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.40e-11!102;UBERON:0000924!2.40e-11!102;UBERON:0006601!2.40e-11!102;UBERON:0002346!2.32e-10!71;UBERON:0003075!2.32e-10!71;UBERON:0007284!2.32e-10!71;UBERON:0001017!6.88e-10!73;UBERON:0005743!6.88e-10!73;UBERON:0000073!3.22e-09!75;UBERON:0001016!3.22e-09!75;UBERON:0000033!3.27e-09!63;UBERON:0002021!1.68e-07!10;UBERON:0000411!1.68e-07!10;UBERON:0001950!1.68e-07!10;UBERON:0000955!2.55e-07!50;UBERON:0006238!2.55e-07!50;UBERON:0002616!7.59e-07!49;UBERON:0001049!7.83e-07!52;UBERON:0005068!7.83e-07!52;UBERON:0006241!7.83e-07!52;UBERON:0007135!7.83e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.57e-10,95;UBERON:0000924,4.57e-10,95;UBERON:0006601,4.57e-10,95;UBERON:0001017,6.88e-10,73;UBERON:0010371,1.66e-09,73;UBERON:0001016,3.22e-09,75;UBERON:0002346,3.62e-09,64;UBERON:0003075,3.62e-09,64;UBERON:0007284,3.62e-09,64;UBERON:0010314,7.35e-09,92;UBERON:0000073,1.39e-07,54;UBERON:0002021,1.68e-07,10;UBERON:0000411,1.68e-07,10;UBERON:0001950,1.68e-07,10;UBERON:0001049,7.83e-07,52;UBERON:0005068,7.83e-07,52;UBERON:0006241,7.83e-07,52;UBERON:0007135,7.83e-07,52|phase1_expression=28.9869413259677,1.74487703819681,5.91499011206397,6.65421264875026,8.5152274090879,7.72244650794693,5.84031601488814,10.7172358456508,3.801295498095,3.7450324211519,11.1291679346578,8.85470964848234,13.1824562047028,13.1130603628496,13.6575002344422,13.970793449898,17.4890469532037,10.4102514568218,9.46089591879598,7.21462408056651,22.7916017604867,9.82980416888764,8.61959304158487,3.99981056983517,5.73523202667925,0,5.59990595006797,5.38678081714723,3.42042155021473,5.29263272495855,5.09980174507201,10.7955214488137,6.1506478758457,31.6963362030877,10.3986583110459,8.31173226792462,11.8418226632174,6.27797446105362,3.906676722619,9.94695113550217,13.5293242247133,9.56263678941824,7.76816564849846,11.4566104357775,9.32667767219534,8.62669735159903,6.25913075478431,5.23260375313072,1.97717564461025,4.86074747685709,2.2397827460058,5.75010257459886,11.2414346058683,10.8804321301702,11.4271891708438,8.2323019531503,12.3209379173665,6.70373719960675,13.9598357993122,12.6957835025288,12.6766280701236,1.35537812827653,0.889294796111139,1.7997994345628,2.96659908770092,1.4209602298922,2.39680088414724,8.06858441175265,10.9910989046986,9.85543349821342,7.99234853135252,10.2834354385369,13.0312439161452,10.656699531701,9.20116521775069,11.0306254393203,25.3266526298594,24.2605942361857,25.9595041203051,11.7378796079873,9.14876436024097,13.022834263919,18.1468949350898,21.3849791812038,29.9484565642548,24.1595440088408,27.9048494366242,21.8087351615602,5.98236927332154,12.5448789777264,11.8844440367688,7.74381489283248,1.3599426674155,7.01614149129162,16.2444104361917,11.6486990645307,9.12888730856387,13.9752864514007,9.35229616570328,10.9535268098205,47.7459193042947,21.815501160434,7.64415719119937,14.2213340630666,5.19578498426914,3.80039798212648,8.59391556525132,6.39429726426736,16.0541487861246,23.4538579722423,11.450031566565,14.3098774806706,18.4492397804847,18.38816214742,21.2835559915626,14.325991411583,9.88779870937496,19.5209131841881,10.6153266233985,12.1325137460557,13.6921741445444,10.6672555689749,9.31958806090611,32.7914492652933,24.2958179903608,7.66371165625774,7.42853771936706,6.59893004092748,7.87835407853001,30.7070810779887,30.1950397860293,17.9685723521396,29.2024857923024,25.3158302757027,27.4280218818619,24.0117069340281,13.0354385728405,13.0627319140598,11.1198013710817,12.2056276414155,17.4361393570023,15.4034409970427,14.2249082546226,17.1803492332715,12.9949713379036,18.8327168818729,17.0537138698706,22.5071932542944,10.5628316537093,19.6670323374532,21.8179393963297,12.9325482132269,18.0730711996639,16.3678518265418,17.0799173218593,17.9130840136644,8.42655824775882,11.5806558201622,7.672414483681,12.4275463521301,11.2572508790926,10.6236616261999,11.6004920436753,12.9864392953287,15.5809784016252,11.39416329277,13.9502168727802,9.10769670463922,10.5318303944627,11.8200574136949,12.9710095273369,15.7895986419359,18.8813099150304,11.9443712696731,25.0245038791311,19.2431625149262,5.28670052774077,7.40461586657924,17.276348293354,19.043407092556,19.330119198314,17.3447831176075,12.2307924114679,11.4135375667535,9.96511029243474,5.59976446061637,9.29940272560997,11.5394753783867,12.6726656627428,14.3811105384675,7.78096979548899,11.3510525754989,5.50036912763937,14.6238096140453,14.6520056375005,14.255592949172,17.4557238450863,12.6945834001477,15.492951595443,9.59465961867414,9.73392112616524,10.7355532611966,8.59712618552732,14.0149888801519,12.7763346823582,14.8408994174003,15.2145091041377,17.1235783424216,16.5506803657923,15.247895284893,7.29608520487659,10.158772287959,8.62609239164127,10.7920874823866,9.67316786655138,10.8608917517258,12.9166137735777,8.20153986317724,13.4869828821621,14.2118558827864,13.8520229975722,16.1257831486429,15.9589368836181,16.4156132292979,17.139142143793,12.2934198150413,16.2364198429377,15.2810635857655,17.8589340896386,11.1427054006702,10.7064688756855,9.25753974921674,6.03165135757089,4.89515115436839,12.7858710984949,12.1412168374082,26.0091955780223,25.7865710502847,17.0492343191742,8.83648245215305,23.347608236803,21.0836921920185,29.5130054893935,17.9226598464414,24.0622568008986,27.4584234865167,29.9559919239422,25.1340037803728,30.8324466798288,37.9159153377732,20.0135520143659,13.8891170860459,11.7278610734575,21.9410263553472,19.9117707509944,9.46844481004428,11.1859716076958,9.8074641473067,6.79194353625777,17.2163682848599,14.9888410037568,12.3601468022352,11.7644134866958,10.4292130118819,9.48767477174989,10.3135543248187,20.0859367394735,14.9450708045987,4.78627129996192,12.8602221018955,18.2660440651542,18.5503570306153,20.2395295340609,4.56697423671899,8.21350978222986,8.89694697628045,13.6727606794076,17.3130565588554,10.8181165886257,12.9672788595535,11.9372344003136,12.6388492803697,10.7847909553045,26.5158181875029,14.8657666294132,14.2406938894624,9.81530995059472,14.3160027323565,12.1657862671712,12.5827995263587,6.96911562974807,9.37674730568509,7.73919853304773,8.59203556213602,19.1383276116587,16.4688768372747,15.9847904416266,14.8452690170273,12.0099410060398,11.8680624818642,12.6459787259764,8.63794608547298,8.03612834409116,10.5627683224777,58.6240656231558,15.2506876964858,12.4093867842823,14.7782903141476,12.5285028773399,14.5302267922069,11.8530811032212,19.2702489569046,33.7647089050789,53.6316748233733,51.8454011264158,8.21628913633263,8.31173382689673,10.0656738021531,11.5629532450238,11.8157619140538,13.510332125126,9.73583141111748,9.30444021199837,13.2266049432073,9.22102360525498,9.27600903258933,9.06358290879698,11.3529973135589,8.99952146798081,14.964205318604,7.5475224147182,9.9582380836518,3.18980771091749,16.4211154927362,10.322536149815,16.3004945597866,11.7902608493486,15.5487352250963,35.0146142422581,31.302116082488,28.0718801585304,27.49650917499,33.5690434687615,32.4819375877571,31.0510350106631,28.3702358031259,27.6416869480365,42.4563455636492,13.5961425335271,16.7590446828433,16.9026269696593,18.4761104971903,13.8344687334468,11.2144540154509,16.0017644017163,15.0405591784393,18.6133141563253,19.2049880940486,18.2505095920973,19.9943921869241,14.8889996877113,15.6221371867881,15.737318493838,10.9547548995107,17.614417543618,17.1689206212697,13.5988347265091,15.6030855342461,15.7719856097291,15.0854435235437,17.4058418661544,17.1508771626148,16.5632509530982,14.2998687336933,18.47572526015,14.4688341290814,17.654534799962,12.3451299764702,19.5747779904887,16.0562306272168,18.415396942636,17.3529262128282,14.0821826016233,16.7373087218424,17.3109390249602,13.7517474590911,10.3295699317175,14.117850823649,14.1439379728457|short_description=p1@Nek1}} | ||
|EntrezGene=18004 | |||
|HGNC= | |||
|MCL_coexpression_id=933 | |||
|UniProt=P51954,B7ZWK0,Q8BSB6,Q8CD72,B2RXX0,B2RXQ4 | |||
|association_with_transcript=0bp_to_ENSMUST00000034065,ENSMUST00000120689,ENSMUST00000125717,ENSMUST00000140444,ENSMUST00000154313,ENSMUST00000155664,NM_175089,uc009ltr.1,uc009lts.1,uc009ltt.1,uc009ltu.1,uc009ltv.1,uc012ged.1,uc012gee.1,uc012gef.1_5end | |||
|description=CAGE_peak_1_at_Nek1_5end | |||
|id=chr8:63471986..63472044,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.40e-11!102;UBERON:0000924!2.40e-11!102;UBERON:0006601!2.40e-11!102;UBERON:0002346!2.32e-10!71;UBERON:0003075!2.32e-10!71;UBERON:0007284!2.32e-10!71;UBERON:0001017!6.88e-10!73;UBERON:0005743!6.88e-10!73;UBERON:0000073!3.22e-09!75;UBERON:0001016!3.22e-09!75;UBERON:0000033!3.27e-09!63;UBERON:0002021!1.68e-07!10;UBERON:0000411!1.68e-07!10;UBERON:0001950!1.68e-07!10;UBERON:0000955!2.55e-07!50;UBERON:0006238!2.55e-07!50;UBERON:0002616!7.59e-07!49;UBERON:0001049!7.83e-07!52;UBERON:0005068!7.83e-07!52;UBERON:0006241!7.83e-07!52;UBERON:0007135!7.83e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.57e-10,95;UBERON:0000924,4.57e-10,95;UBERON:0006601,4.57e-10,95;UBERON:0001017,6.88e-10,73;UBERON:0010371,1.66e-09,73;UBERON:0001016,3.22e-09,75;UBERON:0002346,3.62e-09,64;UBERON:0003075,3.62e-09,64;UBERON:0007284,3.62e-09,64;UBERON:0010314,7.35e-09,92;UBERON:0000073,1.39e-07,54;UBERON:0002021,1.68e-07,10;UBERON:0000411,1.68e-07,10;UBERON:0001950,1.68e-07,10;UBERON:0001049,7.83e-07,52;UBERON:0005068,7.83e-07,52;UBERON:0006241,7.83e-07,52;UBERON:0007135,7.83e-07,52 | |||
|phase1_expression=28.9869413259677,1.74487703819681,5.91499011206397,6.65421264875026,8.5152274090879,7.72244650794693,5.84031601488814,10.7172358456508,3.801295498095,3.7450324211519,11.1291679346578,8.85470964848234,13.1824562047028,13.1130603628496,13.6575002344422,13.970793449898,17.4890469532037,10.4102514568218,9.46089591879598,7.21462408056651,22.7916017604867,9.82980416888764,8.61959304158487,3.99981056983517,5.73523202667925,0,5.59990595006797,5.38678081714723,3.42042155021473,5.29263272495855,5.09980174507201,10.7955214488137,6.1506478758457,31.6963362030877,10.3986583110459,8.31173226792462,11.8418226632174,6.27797446105362,3.906676722619,9.94695113550217,13.5293242247133,9.56263678941824,7.76816564849846,11.4566104357775,9.32667767219534,8.62669735159903,6.25913075478431,5.23260375313072,1.97717564461025,4.86074747685709,2.2397827460058,5.75010257459886,11.2414346058683,10.8804321301702,11.4271891708438,8.2323019531503,12.3209379173665,6.70373719960675,13.9598357993122,12.6957835025288,12.6766280701236,1.35537812827653,0.889294796111139,1.7997994345628,2.96659908770092,1.4209602298922,2.39680088414724,8.06858441175265,10.9910989046986,9.85543349821342,7.99234853135252,10.2834354385369,13.0312439161452,10.656699531701,9.20116521775069,11.0306254393203,25.3266526298594,24.2605942361857,25.9595041203051,11.7378796079873,9.14876436024097,13.022834263919,18.1468949350898,21.3849791812038,29.9484565642548,24.1595440088408,27.9048494366242,21.8087351615602,5.98236927332154,12.5448789777264,11.8844440367688,7.74381489283248,1.3599426674155,7.01614149129162,16.2444104361917,11.6486990645307,9.12888730856387,13.9752864514007,9.35229616570328,10.9535268098205,47.7459193042947,21.815501160434,7.64415719119937,14.2213340630666,5.19578498426914,3.80039798212648,8.59391556525132,6.39429726426736,16.0541487861246,23.4538579722423,11.450031566565,14.3098774806706,18.4492397804847,18.38816214742,21.2835559915626,14.325991411583,9.88779870937496,19.5209131841881,10.6153266233985,12.1325137460557,13.6921741445444,10.6672555689749,9.31958806090611,32.7914492652933,24.2958179903608,7.66371165625774,7.42853771936706,6.59893004092748,7.87835407853001,30.7070810779887,30.1950397860293,17.9685723521396,29.2024857923024,25.3158302757027,27.4280218818619,24.0117069340281,13.0354385728405,13.0627319140598,11.1198013710817,12.2056276414155,17.4361393570023,15.4034409970427,14.2249082546226,17.1803492332715,12.9949713379036,18.8327168818729,17.0537138698706,22.5071932542944,10.5628316537093,19.6670323374532,21.8179393963297,12.9325482132269,18.0730711996639,16.3678518265418,17.0799173218593,17.9130840136644,8.42655824775882,11.5806558201622,7.672414483681,12.4275463521301,11.2572508790926,10.6236616261999,11.6004920436753,12.9864392953287,15.5809784016252,11.39416329277,13.9502168727802,9.10769670463922,10.5318303944627,11.8200574136949,12.9710095273369,15.7895986419359,18.8813099150304,11.9443712696731,25.0245038791311,19.2431625149262,5.28670052774077,7.40461586657924,17.276348293354,19.043407092556,19.330119198314,17.3447831176075,12.2307924114679,11.4135375667535,9.96511029243474,5.59976446061637,9.29940272560997,11.5394753783867,12.6726656627428,14.3811105384675,7.78096979548899,11.3510525754989,5.50036912763937,14.6238096140453,14.6520056375005,14.255592949172,17.4557238450863,12.6945834001477,15.492951595443,9.59465961867414,9.73392112616524,10.7355532611966,8.59712618552732,14.0149888801519,12.7763346823582,14.8408994174003,15.2145091041377,17.1235783424216,16.5506803657923,15.247895284893,7.29608520487659,10.158772287959,8.62609239164127,10.7920874823866,9.67316786655138,10.8608917517258,12.9166137735777,8.20153986317724,13.4869828821621,14.2118558827864,13.8520229975722,16.1257831486429,15.9589368836181,16.4156132292979,17.139142143793,12.2934198150413,16.2364198429377,15.2810635857655,17.8589340896386,11.1427054006702,10.7064688756855,9.25753974921674,6.03165135757089,4.89515115436839,12.7858710984949,12.1412168374082,26.0091955780223,25.7865710502847,17.0492343191742,8.83648245215305,23.347608236803,21.0836921920185,29.5130054893935,17.9226598464414,24.0622568008986,27.4584234865167,29.9559919239422,25.1340037803728,30.8324466798288,37.9159153377732,20.0135520143659,13.8891170860459,11.7278610734575,21.9410263553472,19.9117707509944,9.46844481004428,11.1859716076958,9.8074641473067,6.79194353625777,17.2163682848599,14.9888410037568,12.3601468022352,11.7644134866958,10.4292130118819,9.48767477174989,10.3135543248187,20.0859367394735,14.9450708045987,4.78627129996192,12.8602221018955,18.2660440651542,18.5503570306153,20.2395295340609,4.56697423671899,8.21350978222986,8.89694697628045,13.6727606794076,17.3130565588554,10.8181165886257,12.9672788595535,11.9372344003136,12.6388492803697,10.7847909553045,26.5158181875029,14.8657666294132,14.2406938894624,9.81530995059472,14.3160027323565,12.1657862671712,12.5827995263587,6.96911562974807,9.37674730568509,7.73919853304773,8.59203556213602,19.1383276116587,16.46887683727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| |||
|short_description=p1@Nek1 | |||
}} |
Revision as of 15:50, 14 September 2013
Short description: | p1@Nek1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nek1_5end |
Coexpression cluster: | MCL_coexpression_mm9:933 |
Association with transcript: | 0bp_to_ENSMUST00000034065, ENSMUST00000120689, ENSMUST00000125717, ENSMUST00000140444, ENSMUST00000154313, ENSMUST00000155664, NM_175089, uc009ltr.1, uc009lts.1, uc009ltt.1, uc009ltu.1, uc009ltv.1, uc012ged.1, uc012gee.1, uc012gef.1_5end |
EntrezGene: | Nek1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 4.57e-10 | 95 |
ectoderm | 4.57e-10 | 95 |
presumptive ectoderm | 4.57e-10 | 95 |
central nervous system | 6.88e-10 | 73 |
ecto-epithelium | 1.66e-09 | 73 |
nervous system | 3.22e-09 | 75 |
neurectoderm | 3.62e-09 | 64 |
neural plate | 3.62e-09 | 64 |
presumptive neural plate | 3.62e-09 | 64 |
structure with developmental contribution from neural crest | 7.35e-09 | 92 |
regional part of nervous system | 1.39e-07 | 54 |
occipital lobe | 1.68e-07 | 10 |
visual cortex | 1.68e-07 | 10 |
neocortex | 1.68e-07 | 10 |
neural tube | 7.83e-07 | 52 |
neural rod | 7.83e-07 | 52 |
future spinal cord | 7.83e-07 | 52 |
neural keel | 7.83e-07 | 52 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.