FFCP PHASE1:Mm9::chr7:5008484..5008508,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=232821|HGNC=|MCL_coexpression_id=1|UniProt=D3YWL5|association_with_transcript=-9bp_to_ENSMUST00000123956_5end|description=CAGE_peak_2_at_Ccdc106_5end|id=chr7:5008484..5008508,+|ontology_enrichment_celltype=CL:0000117!1.63e-14!23;CL:0000337!1.63e-14!23;CL:0000540!1.92e-11!33;CL:0000047!1.92e-11!33;CL:0000031!1.92e-11!33;CL:0000404!1.92e-11!33;CL:0000221!5.43e-11!44;CL:0000133!5.43e-11!44;CL:0002319!7.38e-11!43;CL:0000393!1.49e-07!39;CL:0000211!1.49e-07!39;CL:0000055!3.73e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.51e-20,23;CL:0000337,3.51e-20,23;CL:0000540,9.56e-16,33;CL:0000047,9.56e-16,33;CL:0000031,9.56e-16,33;CL:0000404,9.56e-16,33;CL:0002319,1.24e-12,43;CL:0000221,4.06e-12,44;CL:0000133,4.06e-12,44;CL:0000393,7.27e-12,39;CL:0000211,7.27e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!6.17e-30!71;UBERON:0003075!6.17e-30!71;UBERON:0007284!6.17e-30!71;UBERON:0001017!3.58e-29!73;UBERON:0005743!3.58e-29!73;UBERON:0000073!6.72e-28!75;UBERON:0001016!6.72e-28!75;UBERON:0001049!8.94e-28!52;UBERON:0005068!8.94e-28!52;UBERON:0006241!8.94e-28!52;UBERON:0007135!8.94e-28!52;UBERON:0000033!9.36e-28!63;UBERON:0000955!2.78e-26!50;UBERON:0006238!2.78e-26!50;UBERON:0002616!1.27e-25!49;UBERON:0004121!1.31e-25!102;UBERON:0000924!1.31e-25!102;UBERON:0006601!1.31e-25!102;UBERON:0003056!9.23e-24!49;UBERON:0002020!2.49e-22!34;UBERON:0003080!1.47e-21!40;UBERON:0002780!4.81e-21!39;UBERON:0001890!4.81e-21!39;UBERON:0006240!4.81e-21!39;UBERON:0002791!5.49e-19!29;UBERON:0003528!5.49e-19!29;UBERON:0001893!5.49e-19!29;UBERON:0000153!1.26e-14!94;UBERON:0000956!4.11e-14!21;UBERON:0001869!4.11e-14!21;UBERON:0000203!4.11e-14!21;UBERON:0007811!5.33e-13!86;UBERON:0002619!7.45e-12!17;UBERON:0002021!7.67e-09!10;UBERON:0000411!7.67e-09!10;UBERON:0001950!7.67e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.88e-39,64;UBERON:0003075,1.88e-39,64;UBERON:0007284,1.88e-39,64;UBERON:0000073,1.90e-38,54;UBERON:0001017,1.75e-37,73;UBERON:0001049,2.01e-36,52;UBERON:0005068,2.01e-36,52;UBERON:0006241,2.01e-36,52;UBERON:0007135,2.01e-36,52;UBERON:0001016,6.76e-36,75;UBERON:0010371,5.38e-32,73;UBERON:0000955,1.09e-31,47;UBERON:0006238,1.09e-31,47;UBERON:0004121,3.14e-31,95;UBERON:0000924,3.14e-31,95;UBERON:0006601,3.14e-31,95;UBERON:0002616,9.08e-31,46;UBERON:0002020,4.81e-30,34;UBERON:0003056,8.04e-30,49;UBERON:0003080,1.56e-28,40;UBERON:0002780,8.56e-28,39;UBERON:0001890,8.56e-28,39;UBERON:0006240,8.56e-28,39;UBERON:0003528,3.01e-25,29;UBERON:0002791,3.01e-25,29;UBERON:0001893,3.01e-25,29;UBERON:0010314,3.43e-21,92;UBERON:0000956,2.99e-18,21;UBERON:0001869,2.99e-18,21;UBERON:0000203,2.99e-18,21;UBERON:0002619,5.27e-15,17;UBERON:0002021,5.02e-12,10;UBERON:0000411,5.02e-12,10;UBERON:0001950,5.02e-12,10;UBERON:0000025,4.00e-08,114;UBERON:0002420,4.59e-08,8;UBERON:0007245,4.59e-08,8;UBERON:0010009,4.59e-08,8;UBERON:0010011,4.59e-08,8;UBERON:0000454,4.59e-08,8;UBERON:0003076,4.60e-08,12;UBERON:0003057,4.60e-08,12|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0.65407546914134,1.09843091367236,0.972149495371417,0.279972843250725,0,0,0,0,0,0,0,5.26022798234954,8.46385566835253,7.60597684207415,0,0,0,0,0,0.898800331555214,1.53687322128622,2.17748185847803,2.97013064329719,3.36519938162211,7.42692559449889,7.50953039235486,3.42974237801871,2.87536413054709,5.51531271966013,3.30347642998166,4.21368215681119,2.4577045320999,5.01167893374737,4.84884511092771,6.77187381723788,1.95428099300967,2.8138130501584,3.81995619442025,6.48182888042069,4.8406371471695,6.52398060388552,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.845060518660083,0,0,0,0,0,0,0.45673551887624,0,0.148442139064825,0.867426633830679,0.608930956624282,0.461230994512117,0.452167921657868,0.23517741427141,0.125666591329675,0,0,0,0,0,0,0,2.04946557908083,2.09446706813455,0,0,0,0,2.09706895166752,11.8950156732843,8.41884159156192,9.73416193076748,8.95004100656157,3.53239675751252,7.78758062725237,0.305518091550949,0.497627882440372,0.252722758433675,0.631325567659422,1.69156575851515,2.75882525320168,1.44049703844279,0.753524089178575,1.08858398642125,1.15302348256365,1.03071897015702,1.29351685369508,1.5089759505299,1.13463648100692,2.11141348996739,1.97276159184817,1.66828349535359,0.696504333044333,0.61734640922383,0.796137067273973,0,0,0,0.207125772535502,0.469052119962192,0.180062061461015,0.23674473558521,0.196764231747404,0.154267112887378,0,0,0,0,0,0,0,0.219550115291051,0,9.67333763394985,6.79170441703277,0,0,1.06644125267617,0.696710015581316,0.77320476793256,0.403367049246685,0.667134131534611,0.760902504450237,0,0.823494773620054,0.251335208800269,0.397912944082302,0.19496408711912,0,0.648414149624083,0.199141273254367,1.89667900953082,1.37098215131675,1.1270773567308,1.62921062276251,1.35766741017338,1.26244475802573,0.379419222745544,0,0.156998727841375,0.12339716392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| ||
|EntrezGene=232821 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=D3YWL5 | |||
|association_with_transcript=-9bp_to_ENSMUST00000123956_5end | |||
|description=CAGE_peak_2_at_Ccdc106_5end | |||
|id=chr7:5008484..5008508,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.63e-14!23;CL:0000337!1.63e-14!23;CL:0000540!1.92e-11!33;CL:0000047!1.92e-11!33;CL:0000031!1.92e-11!33;CL:0000404!1.92e-11!33;CL:0000221!5.43e-11!44;CL:0000133!5.43e-11!44;CL:0002319!7.38e-11!43;CL:0000393!1.49e-07!39;CL:0000211!1.49e-07!39;CL:0000055!3.73e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.51e-20,23;CL:0000337,3.51e-20,23;CL:0000540,9.56e-16,33;CL:0000047,9.56e-16,33;CL:0000031,9.56e-16,33;CL:0000404,9.56e-16,33;CL:0002319,1.24e-12,43;CL:0000221,4.06e-12,44;CL:0000133,4.06e-12,44;CL:0000393,7.27e-12,39;CL:0000211,7.27e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!6.17e-30!71;UBERON:0003075!6.17e-30!71;UBERON:0007284!6.17e-30!71;UBERON:0001017!3.58e-29!73;UBERON:0005743!3.58e-29!73;UBERON:0000073!6.72e-28!75;UBERON:0001016!6.72e-28!75;UBERON:0001049!8.94e-28!52;UBERON:0005068!8.94e-28!52;UBERON:0006241!8.94e-28!52;UBERON:0007135!8.94e-28!52;UBERON:0000033!9.36e-28!63;UBERON:0000955!2.78e-26!50;UBERON:0006238!2.78e-26!50;UBERON:0002616!1.27e-25!49;UBERON:0004121!1.31e-25!102;UBERON:0000924!1.31e-25!102;UBERON:0006601!1.31e-25!102;UBERON:0003056!9.23e-24!49;UBERON:0002020!2.49e-22!34;UBERON:0003080!1.47e-21!40;UBERON:0002780!4.81e-21!39;UBERON:0001890!4.81e-21!39;UBERON:0006240!4.81e-21!39;UBERON:0002791!5.49e-19!29;UBERON:0003528!5.49e-19!29;UBERON:0001893!5.49e-19!29;UBERON:0000153!1.26e-14!94;UBERON:0000956!4.11e-14!21;UBERON:0001869!4.11e-14!21;UBERON:0000203!4.11e-14!21;UBERON:0007811!5.33e-13!86;UBERON:0002619!7.45e-12!17;UBERON:0002021!7.67e-09!10;UBERON:0000411!7.67e-09!10;UBERON:0001950!7.67e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.88e-39,64;UBERON:0003075,1.88e-39,64;UBERON:0007284,1.88e-39,64;UBERON:0000073,1.90e-38,54;UBERON:0001017,1.75e-37,73;UBERON:0001049,2.01e-36,52;UBERON:0005068,2.01e-36,52;UBERON:0006241,2.01e-36,52;UBERON:0007135,2.01e-36,52;UBERON:0001016,6.76e-36,75;UBERON:0010371,5.38e-32,73;UBERON:0000955,1.09e-31,47;UBERON:0006238,1.09e-31,47;UBERON:0004121,3.14e-31,95;UBERON:0000924,3.14e-31,95;UBERON:0006601,3.14e-31,95;UBERON:0002616,9.08e-31,46;UBERON:0002020,4.81e-30,34;UBERON:0003056,8.04e-30,49;UBERON:0003080,1.56e-28,40;UBERON:0002780,8.56e-28,39;UBERON:0001890,8.56e-28,39;UBERON:0006240,8.56e-28,39;UBERON:0003528,3.01e-25,29;UBERON:0002791,3.01e-25,29;UBERON:0001893,3.01e-25,29;UBERON:0010314,3.43e-21,92;UBERON:0000956,2.99e-18,21;UBERON:0001869,2.99e-18,21;UBERON:0000203,2.99e-18,21;UBERON:0002619,5.27e-15,17;UBERON:0002021,5.02e-12,10;UBERON:0000411,5.02e-12,10;UBERON:0001950,5.02e-12,10;UBERON:0000025,4.00e-08,114;UBERON:0002420,4.59e-08,8;UBERON:0007245,4.59e-08,8;UBERON:0010009,4.59e-08,8;UBERON:0010011,4.59e-08,8;UBERON:0000454,4.59e-08,8;UBERON:0003076,4.60e-08,12;UBERON:0003057,4.60e-08,12 | |||
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|short_description=p2@Ccdc106 | |||
}} |
Revision as of 13:31, 14 September 2013
Short description: | p2@Ccdc106 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ccdc106_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -9bp_to_ENSMUST00000123956_5end |
EntrezGene: | Ccdc106 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.51e-20 | 23 |
neuroblast (sensu Vertebrata) | 3.51e-20 | 23 |
neuron | 9.56e-16 | 33 |
neuronal stem cell | 9.56e-16 | 33 |
neuroblast | 9.56e-16 | 33 |
electrically signaling cell | 9.56e-16 | 33 |
neural cell | 1.24e-12 | 43 |
ectodermal cell | 4.06e-12 | 44 |
neurectodermal cell | 4.06e-12 | 44 |
electrically responsive cell | 7.27e-12 | 39 |
electrically active cell | 7.27e-12 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.