FFCP PHASE1:Mm9::chr18:3382977..3383063,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71745|HGNC=|MCL_coexpression_id=1|UniProt=Q9D4H8|association_with_transcript=0bp_to_ENSMUST00000025073,uc008dxz.2_5end|description=CAGE_peak_2_at_Cul2_5end|id=chr18:3382977..3383063,+|ontology_enrichment_celltype=CL:0000540!1.41e-09!33;CL:0000047!1.41e-09!33;CL:0000031!1.41e-09!33;CL:0000404!1.41e-09!33;CL:0000117!5.09e-08!23;CL:0000337!5.09e-08!23|ontology_enrichment_celltype_v019_2=CL:0000540,1.41e-09,33;CL:0000047,1.41e-09,33;CL:0000031,1.41e-09,33;CL:0000404,1.41e-09,33;CL:0000117,5.09e-08,23;CL:0000337,5.09e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.00e-13!75;UBERON:0001016!7.00e-13!75;UBERON:0001017!1.43e-12!73;UBERON:0005743!1.43e-12!73;UBERON:0002346!2.58e-12!71;UBERON:0003075!2.58e-12!71;UBERON:0007284!2.58e-12!71;UBERON:0002020!3.60e-12!34;UBERON:0004121!1.64e-11!102;UBERON:0000924!1.64e-11!102;UBERON:0006601!1.64e-11!102;UBERON:0001049!2.36e-11!52;UBERON:0005068!2.36e-11!52;UBERON:0006241!2.36e-11!52;UBERON:0007135!2.36e-11!52;UBERON:0000033!5.64e-11!63;UBERON:0000955!1.55e-10!50;UBERON:0006238!1.55e-10!50;UBERON:0002616!4.75e-10!49;UBERON:0002791!1.57e-09!29;UBERON:0003528!1.57e-09!29;UBERON:0001893!1.57e-09!29;UBERON:0003056!6.74e-09!49;UBERON:0003080!5.36e-08!40;UBERON:0002021!1.47e-07!10;UBERON:0000411!1.47e-07!10;UBERON:0001950!1.47e-07!10;UBERON:0002780!1.68e-07!39;UBERON:0001890!1.68e-07!39;UBERON:0006240!1.68e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.21e-13,64;UBERON:0003075,6.21e-13,64;UBERON:0007284,6.21e-13,64;UBERON:0001016,7.26e-13,75;UBERON:0001017,1.48e-12,73;UBERON:0000073,1.65e-12,54;UBERON:0002020,3.74e-12,34;UBERON:0004121,9.55e-12,95;UBERON:0000924,9.55e-12,95;UBERON:0006601,9.55e-12,95;UBERON:0001049,2.43e-11,52;UBERON:0005068,2.43e-11,52;UBERON:0006241,2.43e-11,52;UBERON:0007135,2.43e-11,52;UBERON:0010314,8.33e-11,92;UBERON:0010371,1.05e-10,73;UBERON:0003528,1.63e-09,29;UBERON:0002791,1.63e-09,29;UBERON:0001893,1.63e-09,29;UBERON:0000955,6.38e-09,47;UBERON:0006238,6.38e-09,47;UBERON:0003056,6.92e-09,49;UBERON:0002616,1.85e-08,46;UBERON:0003080,5.51e-08,40;UBERON:0002021,1.47e-07,10;UBERON:0000411,1.47e-07,10;UBERON:0001950,1.47e-07,10;UBERON:0002780,1.72e-07,39;UBERON:0001890,1.72e-07,39;UBERON:0006240,1.72e-07,39|phase1_expression=7.20669811971573,1.74487703819681,4.09499315450582,2.11724947914781,3.50627010962443,2.68606835059024,3.73780224952841,2.7115897922731,10.98152032783,13.3416780003536,3.08192342805909,3.35043067780413,4.28001824828014,4.98296293788285,3.33109761815663,6.2767332890846,4.89693314689703,3.15462165358238,3.15363197293199,4.66828616977833,4.16712121740242,3.67376519443276,4.70159620450084,3.19984845586813,3.89995777814189,1.72269589234506,3.4460959692726,3.23206849028834,3.04037471130198,8.82105454159758,3.76941868114018,5.08024538767705,3.69038872550742,0,4.04392267651784,3.98963148860382,3.67504841272264,2.92972141515835,3.1253413780952,4.18818995179039,4.1176204162171,4.09827290975067,2.42755176515577,3.14742044938943,2.02753862439029,3.12029478674859,1.56478268869608,2.8343270329458,0.878744730937887,2.13872888981712,0.699932108126813,1.43752564364972,11.0736519998106,13.0565185562042,8.4023449785616,4.3734104126111,4.01146815914259,4.12537673821954,9.1042407386819,8.99284664762456,3.80298842103708,0.338844532069132,1.77858959222228,0.449949858640699,0,0.7104801149461,0.599200221036809,1.92109152660777,7.25827286159344,4.59020190327748,5.8890989178387,10.8547374073445,8.83474163806454,6.98197555525238,5.36734637702124,6.43453150627015,23.1243350098716,15.1947932321373,15.9750794586493,7.64940468835124,8.96578907303615,10.939180781692,9.49222196604695,15.757353080887,14.3630352910202,19.4454866412621,15.233769845504,14.3527573285481,5.90664307998836,7.55715601067855,2.89864488701678,7.74381489283248,4.0798280022465,6.47643829965381,14.2950811838487,8.06448396775204,6.03911006566533,4.26075806445144,2.07828803682295,4.24007489412408,5.49289337129054,1.28326477414318,2.54805239706646,7.11066703153331,6.27824018932521,4.56047757855178,7.58286667522175,4.11061966988616,4.14300613835475,3.85949561568544,4.3371331691534,4.56698217468212,6.91846491768175,7.23468674652588,7.64326596382081,4.14699751387929,10.1349936771093,2.60278842455841,4.42305275974937,5.3383060482645,3.97514733228708,5.33362778448744,1.86391761218122,11.7112318804619,11.9384622883669,3.32094171771169,4.19352935770721,5.99902730993408,4.95573885584952,15.5782264981016,10.0650132620098,12.1884721549478,14.2535942557667,16.1100738118108,10.389402227978,17.8465389374533,5.70300437561771,4.47865094196335,1.51633655060205,3.99839526184301,8.84819012146385,8.04657365517155,5.58192602396583,6.93242162044289,7.89223390155403,8.58361925908494,6.46541899462129,4.65666067330228,5.6047678162539,7.75334928688059,7.74184946321375,5.91828477554452,5.83899223373756,4.87553033131033,6.37924622864625,5.37392520409932,5.61770549850588,6.94839349209731,5.11494298912067,7.87077935634907,5.39409937956521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| ||
|EntrezGene=71745 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q9D4H8 | |||
|association_with_transcript=0bp_to_ENSMUST00000025073,uc008dxz.2_5end | |||
|description=CAGE_peak_2_at_Cul2_5end | |||
|id=chr18:3382977..3383063,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.41e-09!33;CL:0000047!1.41e-09!33;CL:0000031!1.41e-09!33;CL:0000404!1.41e-09!33;CL:0000117!5.09e-08!23;CL:0000337!5.09e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.41e-09,33;CL:0000047,1.41e-09,33;CL:0000031,1.41e-09,33;CL:0000404,1.41e-09,33;CL:0000117,5.09e-08,23;CL:0000337,5.09e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.00e-13!75;UBERON:0001016!7.00e-13!75;UBERON:0001017!1.43e-12!73;UBERON:0005743!1.43e-12!73;UBERON:0002346!2.58e-12!71;UBERON:0003075!2.58e-12!71;UBERON:0007284!2.58e-12!71;UBERON:0002020!3.60e-12!34;UBERON:0004121!1.64e-11!102;UBERON:0000924!1.64e-11!102;UBERON:0006601!1.64e-11!102;UBERON:0001049!2.36e-11!52;UBERON:0005068!2.36e-11!52;UBERON:0006241!2.36e-11!52;UBERON:0007135!2.36e-11!52;UBERON:0000033!5.64e-11!63;UBERON:0000955!1.55e-10!50;UBERON:0006238!1.55e-10!50;UBERON:0002616!4.75e-10!49;UBERON:0002791!1.57e-09!29;UBERON:0003528!1.57e-09!29;UBERON:0001893!1.57e-09!29;UBERON:0003056!6.74e-09!49;UBERON:0003080!5.36e-08!40;UBERON:0002021!1.47e-07!10;UBERON:0000411!1.47e-07!10;UBERON:0001950!1.47e-07!10;UBERON:0002780!1.68e-07!39;UBERON:0001890!1.68e-07!39;UBERON:0006240!1.68e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.21e-13,64;UBERON:0003075,6.21e-13,64;UBERON:0007284,6.21e-13,64;UBERON:0001016,7.26e-13,75;UBERON:0001017,1.48e-12,73;UBERON:0000073,1.65e-12,54;UBERON:0002020,3.74e-12,34;UBERON:0004121,9.55e-12,95;UBERON:0000924,9.55e-12,95;UBERON:0006601,9.55e-12,95;UBERON:0001049,2.43e-11,52;UBERON:0005068,2.43e-11,52;UBERON:0006241,2.43e-11,52;UBERON:0007135,2.43e-11,52;UBERON:0010314,8.33e-11,92;UBERON:0010371,1.05e-10,73;UBERON:0003528,1.63e-09,29;UBERON:0002791,1.63e-09,29;UBERON:0001893,1.63e-09,29;UBERON:0000955,6.38e-09,47;UBERON:0006238,6.38e-09,47;UBERON:0003056,6.92e-09,49;UBERON:0002616,1.85e-08,46;UBERON:0003080,5.51e-08,40;UBERON:0002021,1.47e-07,10;UBERON:0000411,1.47e-07,10;UBERON:0001950,1.47e-07,10;UBERON:0002780,1.72e-07,39;UBERON:0001890,1.72e-07,39;UBERON:0006240,1.72e-07,39 | |||
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| |||
|short_description=p2@Cul2 | |||
}} |
Revision as of 15:56, 13 September 2013
Short description: | p2@Cul2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Cul2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000025073, uc008dxz.2_5end |
EntrezGene: | Cul2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.41e-09 | 33 |
neuronal stem cell | 1.41e-09 | 33 |
neuroblast | 1.41e-09 | 33 |
electrically signaling cell | 1.41e-09 | 33 |
CNS neuron (sensu Vertebrata) | 5.09e-08 | 23 |
neuroblast (sensu Vertebrata) | 5.09e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 6.21e-13 | 64 |
neural plate | 6.21e-13 | 64 |
presumptive neural plate | 6.21e-13 | 64 |
nervous system | 7.26e-13 | 75 |
central nervous system | 1.48e-12 | 73 |
regional part of nervous system | 1.65e-12 | 54 |
gray matter | 3.74e-12 | 34 |
ectoderm-derived structure | 9.55e-12 | 95 |
ectoderm | 9.55e-12 | 95 |
presumptive ectoderm | 9.55e-12 | 95 |
neural tube | 2.43e-11 | 52 |
neural rod | 2.43e-11 | 52 |
future spinal cord | 2.43e-11 | 52 |
neural keel | 2.43e-11 | 52 |
structure with developmental contribution from neural crest | 8.33e-11 | 92 |
ecto-epithelium | 1.05e-10 | 73 |
brain grey matter | 1.63e-09 | 29 |
regional part of telencephalon | 1.63e-09 | 29 |
telencephalon | 1.63e-09 | 29 |
brain | 6.38e-09 | 47 |
future brain | 6.38e-09 | 47 |
pre-chordal neural plate | 6.92e-09 | 49 |
regional part of brain | 1.85e-08 | 46 |
anterior neural tube | 5.51e-08 | 40 |
occipital lobe | 1.47e-07 | 10 |
visual cortex | 1.47e-07 | 10 |
neocortex | 1.47e-07 | 10 |
regional part of forebrain | 1.72e-07 | 39 |
forebrain | 1.72e-07 | 39 |
future forebrain | 1.72e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.