FFCP PHASE1:Mm9::chr11:93829611..93829622,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18103|HGNC=|UniProt=E9PZF0|association_with_transcript=-4bp_to_ENSMUST00000170303_5end|description=CAGE_peak_5_at_Nme2_5end|id=chr11:93829611..93829622,-|ontology_enrichment_celltype=CL:0000221!7.34e-15!44;CL:0000133!7.34e-15!44;CL:0002319!1.27e-14!43;CL:0000055!1.51e-14!50;CL:0000117!2.23e-12!23;CL:0000337!2.23e-12!23;CL:0002321!5.55e-12!70;CL:0000220!5.55e-12!70;CL:0000393!2.16e-10!39;CL:0000211!2.16e-10!39;CL:0000540!4.40e-10!33;CL:0000047!4.40e-10!33;CL:0000031!4.40e-10!33;CL:0000404!4.40e-10!33;CL:0000548!1.00e-09!115;CL:0000004!1.00e-09!115;CL:0000255!1.00e-09!115;CL:0002371!1.33e-08!118;CL:0000144!1.39e-07!121;CL:0000012!1.39e-07!121|ontology_enrichment_celltype_v019_2=CL:0000221,5.11e-15,44;CL:0000133,5.11e-15,44;CL:0002319,8.88e-15,43;CL:0002321,1.63e-12,70;CL:0000117,1.78e-12,23;CL:0000337,1.78e-12,23;CL:0000393,1.67e-10,39;CL:0000211,1.67e-10,39;CL:0000540,3.41e-10,33;CL:0000047,3.41e-10,33;CL:0000031,3.41e-10,33;CL:0000404,3.41e-10,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.99e-16!75;UBERON:0001016!3.99e-16!75;UBERON:0001017!3.21e-15!73;UBERON:0005743!3.21e-15!73;UBERON:0002020!5.36e-14!34;UBERON:0001049!1.22e-11!52;UBERON:0005068!1.22e-11!52;UBERON:0006241!1.22e-11!52;UBERON:0007135!1.22e-11!52;UBERON:0004121!3.79e-11!102;UBERON:0000924!3.79e-11!102;UBERON:0006601!3.79e-11!102;UBERON:0002791!5.02e-11!29;UBERON:0003528!5.02e-11!29;UBERON:0001893!5.02e-11!29;UBERON:0000955!1.69e-09!50;UBERON:0006238!1.69e-09!50;UBERON:0002616!4.03e-09!49;UBERON:0003080!6.41e-09!40;UBERON:0002780!1.11e-08!39;UBERON:0001890!1.11e-08!39;UBERON:0006240!1.11e-08!39;UBERON:0002346!1.65e-08!71;UBERON:0003075!1.65e-08!71;UBERON:0007284!1.65e-08!71;UBERON:0000033!1.85e-08!63;UBERON:0000956!1.39e-07!21;UBERON:0001869!1.39e-07!21;UBERON:0000203!1.39e-07!21;UBERON:0003056!1.98e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.77e-16,75;UBERON:0001017,2.28e-15,73;UBERON:0002020,4.69e-14,34;UBERON:0004121,6.07e-13,95;UBERON:0000924,6.07e-13,95;UBERON:0006601,6.07e-13,95;UBERON:0000073,8.99e-12,54;UBERON:0001049,1.00e-11,52;UBERON:0005068,1.00e-11,52;UBERON:0006241,1.00e-11,52;UBERON:0007135,1.00e-11,52;UBERON:0003528,4.64e-11,29;UBERON:0002791,4.64e-11,29;UBERON:0001893,4.64e-11,29;UBERON:0002346,2.29e-10,64;UBERON:0003075,2.29e-10,64;UBERON:0007284,2.29e-10,64;UBERON:0010371,1.96e-09,73;UBERON:0000955,3.02e-09,47;UBERON:0006238,3.02e-09,47;UBERON:0003080,5.86e-09,40;UBERON:0002616,7.22e-09,46;UBERON:0002780,1.02e-08,39;UBERON:0001890,1.02e-08,39;UBERON:0006240,1.02e-08,39;UBERON:0000956,1.37e-07,21;UBERON:0001869,1.37e-07,21;UBERON:0000203,1.37e-07,21;UBERON:0003056,1.83e-07,49|phase1_expression=3.68342348341026,2.44282785347553,1.36499771816861,1.81478526784098,0.500895729946347,4.36486106970913,5.13947809310157,0.645616617207881,0.422366166455,2.80877431586392,2.73948749160808,5.42450681168288,0,0.961624426608971,2.6648780945253,2.02475267389826,0,0.315462165358238,0.822686601634433,0.42438965179803,2.12608225377674,3.67376519443276,1.30599894569468,2.71987118748791,3.89995777814189,2.29692785646008,1.7230479846363,5.38678081714723,2.66032787238923,2.26827116783938,5.54326276638262,4.44521471421742,11.0711661765223,0,2.02196133825892,3.32469290716985,2.45003227514843,0,1.5626706890476,0.523523743973798,0.588231488031014,0,0,1.00717454380462,2.63580021170738,3.85448179539531,3.12956537739216,3.70642765846759,5.4921545683618,4.27745777963423,6.57936181639204,8.62515386189829,0.167782606057736,0.725362142011344,0.672187598284928,4.3734104126111,3.43840127926508,2.06268836910977,7.08107613008592,4.7609188134483,7.60597684207415,6.77689064138264,6.22506357277798,4.04954872776629,2.96659908770092,3.5524005747305,3.89480143673926,4.99483796918021,3.7328260431052,4.86021377994086,4.20649922702764,7.14127461009509,7.73039893330647,6.00204916153275,6.99671938433125,3.67687514644008,1.10115880999389,4.97980618532232,4.14737639791857,8.44072241473241,14.4550476891807,4.68822033501084,8.37548997004143,6.19038871034848,5.65353516774197,4.12480019663135,7.11858403995515,7.64237727883732,6.81535739998656,3.47629176491213,0,1.72084775396277,1.3599426674155,2.15881276655127,1.94932925234301,1.79210754838934,1.26399978118577,2.55645483867087,4.1565760736459,3.5333957451034,3.23939865486365,5.13305909657271,0,0,2.81438353314578,2.28023878927589,2.52762222507392,1.82694207550496,0,1.33597925158342,2.25530924795977,0.913396434936424,1.61430848079241,2.26083960828934,0.705532242814229,1.50799909595611,1.48316980640624,0.86759614151947,2.65383165584962,2.10296904931632,2.87093973998512,0.969750506270444,1.86391761218122,0.585561594023094,1.46612694769419,0.766371165625774,0.599075622529601,1.19980546198682,1.27070227073065,3.2953940669061,1.37250180845588,6.53402630986895,3.65031072403781,4.60287823194595,4.1557608911912,3.56930778749067,1.12023300235348,0.622034853050465,3.53811861807145,0.631325567659422,2.86264974517948,3.21862946206862,2.340807687469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| ||
|EntrezGene=18103 | |||
|HGNC= | |||
|UniProt=E9PZF0 | |||
|association_with_transcript=-4bp_to_ENSMUST00000170303_5end | |||
|description=CAGE_peak_5_at_Nme2_5end | |||
|id=chr11:93829611..93829622,- | |||
|ontology_enrichment_celltype=CL:0000221!7.34e-15!44;CL:0000133!7.34e-15!44;CL:0002319!1.27e-14!43;CL:0000055!1.51e-14!50;CL:0000117!2.23e-12!23;CL:0000337!2.23e-12!23;CL:0002321!5.55e-12!70;CL:0000220!5.55e-12!70;CL:0000393!2.16e-10!39;CL:0000211!2.16e-10!39;CL:0000540!4.40e-10!33;CL:0000047!4.40e-10!33;CL:0000031!4.40e-10!33;CL:0000404!4.40e-10!33;CL:0000548!1.00e-09!115;CL:0000004!1.00e-09!115;CL:0000255!1.00e-09!115;CL:0002371!1.33e-08!118;CL:0000144!1.39e-07!121;CL:0000012!1.39e-07!121 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.11e-15,44;CL:0000133,5.11e-15,44;CL:0002319,8.88e-15,43;CL:0002321,1.63e-12,70;CL:0000117,1.78e-12,23;CL:0000337,1.78e-12,23;CL:0000393,1.67e-10,39;CL:0000211,1.67e-10,39;CL:0000540,3.41e-10,33;CL:0000047,3.41e-10,33;CL:0000031,3.41e-10,33;CL:0000404,3.41e-10,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.99e-16!75;UBERON:0001016!3.99e-16!75;UBERON:0001017!3.21e-15!73;UBERON:0005743!3.21e-15!73;UBERON:0002020!5.36e-14!34;UBERON:0001049!1.22e-11!52;UBERON:0005068!1.22e-11!52;UBERON:0006241!1.22e-11!52;UBERON:0007135!1.22e-11!52;UBERON:0004121!3.79e-11!102;UBERON:0000924!3.79e-11!102;UBERON:0006601!3.79e-11!102;UBERON:0002791!5.02e-11!29;UBERON:0003528!5.02e-11!29;UBERON:0001893!5.02e-11!29;UBERON:0000955!1.69e-09!50;UBERON:0006238!1.69e-09!50;UBERON:0002616!4.03e-09!49;UBERON:0003080!6.41e-09!40;UBERON:0002780!1.11e-08!39;UBERON:0001890!1.11e-08!39;UBERON:0006240!1.11e-08!39;UBERON:0002346!1.65e-08!71;UBERON:0003075!1.65e-08!71;UBERON:0007284!1.65e-08!71;UBERON:0000033!1.85e-08!63;UBERON:0000956!1.39e-07!21;UBERON:0001869!1.39e-07!21;UBERON:0000203!1.39e-07!21;UBERON:0003056!1.98e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.77e-16,75;UBERON:0001017,2.28e-15,73;UBERON:0002020,4.69e-14,34;UBERON:0004121,6.07e-13,95;UBERON:0000924,6.07e-13,95;UBERON:0006601,6.07e-13,95;UBERON:0000073,8.99e-12,54;UBERON:0001049,1.00e-11,52;UBERON:0005068,1.00e-11,52;UBERON:0006241,1.00e-11,52;UBERON:0007135,1.00e-11,52;UBERON:0003528,4.64e-11,29;UBERON:0002791,4.64e-11,29;UBERON:0001893,4.64e-11,29;UBERON:0002346,2.29e-10,64;UBERON:0003075,2.29e-10,64;UBERON:0007284,2.29e-10,64;UBERON:0010371,1.96e-09,73;UBERON:0000955,3.02e-09,47;UBERON:0006238,3.02e-09,47;UBERON:0003080,5.86e-09,40;UBERON:0002616,7.22e-09,46;UBERON:0002780,1.02e-08,39;UBERON:0001890,1.02e-08,39;UBERON:0006240,1.02e-08,39;UBERON:0000956,1.37e-07,21;UBERON:0001869,1.37e-07,21;UBERON:0000203,1.37e-07,21;UBERON:0003056,1.83e-07,49 | |||
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| |||
|short_description=p5@Nme2 | |||
}} |
Revision as of 21:29, 12 September 2013
Short description: | p5@Nme2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Nme2_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_ENSMUST00000170303_5end |
EntrezGene: | Nme2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.11e-15 | 44 |
neurectodermal cell | 5.11e-15 | 44 |
neural cell | 8.88e-15 | 43 |
embryonic cell | 1.63e-12 | 70 |
CNS neuron (sensu Vertebrata) | 1.78e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.78e-12 | 23 |
electrically responsive cell | 1.67e-10 | 39 |
electrically active cell | 1.67e-10 | 39 |
neuron | 3.41e-10 | 33 |
neuronal stem cell | 3.41e-10 | 33 |
neuroblast | 3.41e-10 | 33 |
electrically signaling cell | 3.41e-10 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.77e-16 | 75 |
central nervous system | 2.28e-15 | 73 |
gray matter | 4.69e-14 | 34 |
ectoderm-derived structure | 6.07e-13 | 95 |
ectoderm | 6.07e-13 | 95 |
presumptive ectoderm | 6.07e-13 | 95 |
regional part of nervous system | 8.99e-12 | 54 |
neural tube | 1.00e-11 | 52 |
neural rod | 1.00e-11 | 52 |
future spinal cord | 1.00e-11 | 52 |
neural keel | 1.00e-11 | 52 |
brain grey matter | 4.64e-11 | 29 |
regional part of telencephalon | 4.64e-11 | 29 |
telencephalon | 4.64e-11 | 29 |
neurectoderm | 2.29e-10 | 64 |
neural plate | 2.29e-10 | 64 |
presumptive neural plate | 2.29e-10 | 64 |
ecto-epithelium | 1.96e-09 | 73 |
brain | 3.02e-09 | 47 |
future brain | 3.02e-09 | 47 |
anterior neural tube | 5.86e-09 | 40 |
regional part of brain | 7.22e-09 | 46 |
regional part of forebrain | 1.02e-08 | 39 |
forebrain | 1.02e-08 | 39 |
future forebrain | 1.02e-08 | 39 |
cerebral cortex | 1.37e-07 | 21 |
cerebral hemisphere | 1.37e-07 | 21 |
pallium | 1.37e-07 | 21 |
pre-chordal neural plate | 1.83e-07 | 49 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.