FFCP PHASE1:Mm9::chr9:107134147..107134225,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=208869|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=0bp_to_ENSMUST00000167053,ENSMUST00000169164_5end|description=CAGE_peak_1_at_Dock3_5end|id=chr9:107134147..107134225,-|ontology_enrichment_celltype=CL:0000221!1.65e-13!44;CL:0000133!1.65e-13!44;CL:0000540!1.74e-13!33;CL:0000047!1.74e-13!33;CL:0000031!1.74e-13!33;CL:0000404!1.74e-13!33;CL:0002319!3.09e-13!43;CL:0000117!6.45e-13!23;CL:0000337!6.45e-13!23;CL:0000393!6.44e-09!39;CL:0000211!6.44e-09!39;CL:0000055!1.06e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.13e-15,33;CL:0000047,1.13e-15,33;CL:0000031,1.13e-15,33;CL:0000404,1.13e-15,33;CL:0000117,5.31e-15,23;CL:0000337,5.31e-15,23;CL:0000221,1.08e-14,44;CL:0000133,1.08e-14,44;CL:0002319,2.26e-14,43;CL:0000393,3.78e-11,39;CL:0000211,3.78e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!5.99e-32!102;UBERON:0000924!5.99e-32!102;UBERON:0006601!5.99e-32!102;UBERON:0000073!2.38e-30!75;UBERON:0001016!2.38e-30!75;UBERON:0001017!2.58e-30!73;UBERON:0005743!2.58e-30!73;UBERON:0002346!1.67e-27!71;UBERON:0003075!1.67e-27!71;UBERON:0007284!1.67e-27!71;UBERON:0000033!2.49e-26!63;UBERON:0001049!2.06e-24!52;UBERON:0005068!2.06e-24!52;UBERON:0006241!2.06e-24!52;UBERON:0007135!2.06e-24!52;UBERON:0000955!1.40e-23!50;UBERON:0006238!1.40e-23!50;UBERON:0002616!8.21e-23!49;UBERON:0003056!1.22e-21!49;UBERON:0002020!2.52e-19!34;UBERON:0003080!1.35e-18!40;UBERON:0002780!5.92e-18!39;UBERON:0001890!5.92e-18!39;UBERON:0006240!5.92e-18!39;UBERON:0002791!1.39e-16!29;UBERON:0003528!1.39e-16!29;UBERON:0001893!1.39e-16!29;UBERON:0007811!5.74e-14!86;UBERON:0000153!2.41e-12!94;UBERON:0000956!4.08e-12!21;UBERON:0001869!4.08e-12!21;UBERON:0000203!4.08e-12!21;UBERON:0002619!4.47e-10!17;UBERON:0002021!3.35e-08!10;UBERON:0000411!3.35e-08!10;UBERON:0001950!3.35e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.00e-34,95;UBERON:0000924,1.00e-34,95;UBERON:0006601,1.00e-34,95;UBERON:0001016,2.14e-34,75;UBERON:0001017,2.42e-34,73;UBERON:0002346,3.59e-32,64;UBERON:0003075,3.59e-32,64;UBERON:0007284,3.59e-32,64;UBERON:0010371,3.17e-30,73;UBERON:0000073,1.51e-29,54;UBERON:0001049,6.10e-28,52;UBERON:0005068,6.10e-28,52;UBERON:0006241,6.10e-28,52;UBERON:0007135,6.10e-28,52;UBERON:0003056,2.47e-25,49;UBERON:0000955,1.21e-24,47;UBERON:0006238,1.21e-24,47;UBERON:0002616,9.35e-24,46;UBERON:0002020,1.36e-22,34;UBERON:0003080,9.93e-22,40;UBERON:0002780,5.73e-21,39;UBERON:0001890,5.73e-21,39;UBERON:0006240,5.73e-21,39;UBERON:0003528,2.41e-19,29;UBERON:0002791,2.41e-19,29;UBERON:0001893,2.41e-19,29;UBERON:0010314,3.54e-19,92;UBERON:0000956,4.72e-14,21;UBERON:0001869,4.72e-14,21;UBERON:0000203,4.72e-14,21;UBERON:0002619,1.22e-11,17;UBERON:0002021,2.01e-09,10;UBERON:0000411,2.01e-09,10;UBERON:0001950,2.01e-09,10|phase1_expression=4.64431656603902,0,0,0,0,0.16787927191189,0.233612640595526,0.129123323441576,0.563154888606667,0.234064526321993,0.856089841127525,0.797721589953364,0.171200729931206,0.174840804837995,0,0.202475267389826,0,0,0,0,28.3194156203062,0,0,0,0,0,0,0,0,0,0.221730510655305,1.27006134691926,1.23012957516914,15.8481681015439,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,0.782391344348039,1.96222640742402,1.09843091367236,2.52758868796568,0.699932108126813,2.87505128729943,0,0,0,0,0,0,46.3304695368479,43.3772603003067,42.466704034914,0.338844532069132,0,0,0,0,2.39680088414724,4.61061966385865,37.7430188802859,34.5615202129128,32.8106939708156,43.1332986449743,45.2780508950808,36.7472397644862,31.2456235519451,32.1726575313507,66.0695285996332,95.5101288877204,87.709330489315,54.4690368325701,51.4160557045542,42.7148963856543,65.8871877643259,50.6486349028512,66.3144395351356,52.1492596288392,55.5249555116501,52.5646437227348,1.8931548333296,1.66257432234928,0.869593466105033,0,0,0,0,0,2.80888840263504,0,0,0,8.30976176682415,0,0,0,0.216491041011214,0.253359865475099,0,2.16949371466214,1.29468941823586,5.19547486726887,0.867426633830679,1.21786191324856,0.461230994512117,1.3565037649736,2.82212897125692,1.75933227861546,0,1.59059292611903,1.76922110389975,0.485300549842228,0,0,1.86391761218122,102.18049815703,111.844541438385,0.766371165625774,0,0,0,94.3681028250383,140.910185668137,55.1622605775475,158.180131374972,155.986428971502,78.3360927989542,112.595436569024,0.611036183101898,0.124406970610093,0,9.46988351489133,3.513251959993,7.35686734187113,7.20248519221397,11.6042709733501,24.0849206995701,18.9608306021578,18.3655380137068,21.9897865128163,0,0.378212160335639,0.351902248327898,0.219195732427575,0.556094498451196,0.348252166522167,0.61734640922383,2.38841120182192,0,0,0,0.621377317606506,0.469052119962192,0.36012412292203,0.23674473558521,0.196764231747404,0.154267112887378,0.465067889500816,0,0.700592054203017,0.658239399653922,0,0.810688095458557,0.584799949701329,1.3173006917463,0.402619256281115,82.643949785702,42.9112233621616,0,0.264450566663544,0,0,1.28867461322093,1.21010114774006,1.11189021922435,0.380451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| ||
|EntrezGene=208869 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000167053,ENSMUST00000169164_5end | |||
|description=CAGE_peak_1_at_Dock3_5end | |||
|id=chr9:107134147..107134225,- | |||
|ontology_enrichment_celltype=CL:0000221!1.65e-13!44;CL:0000133!1.65e-13!44;CL:0000540!1.74e-13!33;CL:0000047!1.74e-13!33;CL:0000031!1.74e-13!33;CL:0000404!1.74e-13!33;CL:0002319!3.09e-13!43;CL:0000117!6.45e-13!23;CL:0000337!6.45e-13!23;CL:0000393!6.44e-09!39;CL:0000211!6.44e-09!39;CL:0000055!1.06e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.13e-15,33;CL:0000047,1.13e-15,33;CL:0000031,1.13e-15,33;CL:0000404,1.13e-15,33;CL:0000117,5.31e-15,23;CL:0000337,5.31e-15,23;CL:0000221,1.08e-14,44;CL:0000133,1.08e-14,44;CL:0002319,2.26e-14,43;CL:0000393,3.78e-11,39;CL:0000211,3.78e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.99e-32!102;UBERON:0000924!5.99e-32!102;UBERON:0006601!5.99e-32!102;UBERON:0000073!2.38e-30!75;UBERON:0001016!2.38e-30!75;UBERON:0001017!2.58e-30!73;UBERON:0005743!2.58e-30!73;UBERON:0002346!1.67e-27!71;UBERON:0003075!1.67e-27!71;UBERON:0007284!1.67e-27!71;UBERON:0000033!2.49e-26!63;UBERON:0001049!2.06e-24!52;UBERON:0005068!2.06e-24!52;UBERON:0006241!2.06e-24!52;UBERON:0007135!2.06e-24!52;UBERON:0000955!1.40e-23!50;UBERON:0006238!1.40e-23!50;UBERON:0002616!8.21e-23!49;UBERON:0003056!1.22e-21!49;UBERON:0002020!2.52e-19!34;UBERON:0003080!1.35e-18!40;UBERON:0002780!5.92e-18!39;UBERON:0001890!5.92e-18!39;UBERON:0006240!5.92e-18!39;UBERON:0002791!1.39e-16!29;UBERON:0003528!1.39e-16!29;UBERON:0001893!1.39e-16!29;UBERON:0007811!5.74e-14!86;UBERON:0000153!2.41e-12!94;UBERON:0000956!4.08e-12!21;UBERON:0001869!4.08e-12!21;UBERON:0000203!4.08e-12!21;UBERON:0002619!4.47e-10!17;UBERON:0002021!3.35e-08!10;UBERON:0000411!3.35e-08!10;UBERON:0001950!3.35e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.00e-34,95;UBERON:0000924,1.00e-34,95;UBERON:0006601,1.00e-34,95;UBERON:0001016,2.14e-34,75;UBERON:0001017,2.42e-34,73;UBERON:0002346,3.59e-32,64;UBERON:0003075,3.59e-32,64;UBERON:0007284,3.59e-32,64;UBERON:0010371,3.17e-30,73;UBERON:0000073,1.51e-29,54;UBERON:0001049,6.10e-28,52;UBERON:0005068,6.10e-28,52;UBERON:0006241,6.10e-28,52;UBERON:0007135,6.10e-28,52;UBERON:0003056,2.47e-25,49;UBERON:0000955,1.21e-24,47;UBERON:0006238,1.21e-24,47;UBERON:0002616,9.35e-24,46;UBERON:0002020,1.36e-22,34;UBERON:0003080,9.93e-22,40;UBERON:0002780,5.73e-21,39;UBERON:0001890,5.73e-21,39;UBERON:0006240,5.73e-21,39;UBERON:0003528,2.41e-19,29;UBERON:0002791,2.41e-19,29;UBERON:0001893,2.41e-19,29;UBERON:0010314,3.54e-19,92;UBERON:0000956,4.72e-14,21;UBERON:0001869,4.72e-14,21;UBERON:0000203,4.72e-14,21;UBERON:0002619,1.22e-11,17;UBERON:0002021,2.01e-09,10;UBERON:0000411,2.01e-09,10;UBERON:0001950,2.01e-09,10 | |||
|phase1_expression=4.64431656603902,0,0,0,0,0.16787927191189,0.233612640595526,0.129123323441576,0.563154888606667,0.234064526321993,0.856089841127525,0.797721589953364,0.171200729931206,0.174840804837995,0,0.202475267389826,0,0,0,0,28.3194156203062,0,0,0,0,0,0,0,0,0,0.221730510655305,1.27006134691926,1.23012957516914,15.8481681015439,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,0.782391344348039,1.96222640742402,1.09843091367236,2.52758868796568,0.699932108126813,2.87505128729943,0,0,0,0,0,0,46.3304695368479,43.3772603003067,42.466704034914,0.338844532069132,0,0,0,0,2.39680088414724,4.61061966385865,37.7430188802859,34.5615202129128,32.8106939708156,43.1332986449743,45.2780508950808,36.7472397644862,31.2456235519451,32.1726575313507,66.0695285996332,95.5101288877204,87.709330489315,54.4690368325701,51.4160557045542,42.7148963856543,65.8871877643259,50.6486349028512,66.3144395351356,52.1492596288392,55.5249555116501,52.5646437227348,1.8931548333296,1.66257432234928,0.869593466105033,0,0,0,0,0,2.80888840263504,0,0,0,8.30976176682415,0,0,0,0.216491041011214,0.253359865475099,0,2.16949371466214,1.29468941823586,5.19547486726887,0.867426633830679,1.21786191324856,0.461230994512117,1.3565037649736,2.82212897125692,1.75933227861546,0,1.59059292611903,1.76922110389975,0.485300549842228,0,0,1.86391761218122,102.18049815703,111.844541438385,0.766371165625774,0,0,0,94.3681028250383,140.910185668137,55.1622605775475,158.180131374972,155.986428971502,78.3360927989542,112.595436569024,0.611036183101898,0.124406970610093,0,9.46988351489133,3.513251959993,7.35686734187113,7.20248519221397,11.6042709733501,24.0849206995701,18.9608306021578,18.3655380137068,21.9897865128163,0,0.378212160335639,0.351902248327898,0.219195732427575,0.556094498451196,0.348252166522167,0.61734640922383,2.38841120182192,0,0,0,0.621377317606506,0.469052119962192,0.36012412292203,0.23674473558521,0.196764231747404,0.154267112887378,0.465067889500816,0,0.700592054203017,0.658239399653922,0,0.810688095458557,0.584799949701329,1.3173006917463,0.402619256281115,82.643949785702,42.9112233621616,0,0.264450566663544,0,0,1.28867461322093,1.21010114774006,1.11189021922435,0.380451252225118,0,0.494096864172033,0.754005626400808,1.1937388322469,0.779856348476481,0,0.432276099749388,0.796565093017469,0.189667900953082,1.02823661348756,1.1270773567308,0.203651327845314,0.581857461502877,0.561086559122548,0.126473074248515,0,0.156998727841375,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554259570499814,0.568474235311454,0.651859905768103,0.339490171550376,0.704070744865506,0.335012514883631,0.238043640886014,0.195133647857799,0.315270288212382,0,0,0.163863314715738,0.172684981865896,0.578596234326046,0,0,0.491764273019036,0.275936746304732,75.4587772942622,79.4695235095137,0,0,3.15508219416257,3.12350995437311,2.15423397732799,3.34556317133573,1.78238939265915,5.66153061577665,2.83367491172426,6.42962887404886,6.32460444714438,169.657655070714,1.27746076687442,1.6025904330053,1.62886959353576,0.824850614862677,0,0,0.302323556964751,0.377210159511796,0,0,0.775284879504663,0.363533729477506,0,0.316036757935816,0,0,12.9367050186439,2.16073312837572,1.03486947026204,1.28602221018955,1.95074257006501,5.17269571046005,4.93647061806363,3.65357938937519,0.469343416127421,0.21183207086382,0.882113592219848,1.31909002353184,0.484393280087717,1.44751019827574,2.626191568069,2.46211349617592,1.45740418314925,73.6138448981723,0,0,0,0,0,0,0.509935289981566,0.559805809294632,0.690999869022119,0,0.474503990371703,0.609958401380546,1.18805874903981,0.836353184057875,0.218362563746178,0.809186078308924,0.909188012978695,0.523511883968059,0.129614973291793,0.621339313086926,16.9107881605257,1.04661582230785,1.48912641411388,6.61134040369762,3.87479470433193,2.36538575687089,1.99507305697782,8.07267186032491,24.1176492179135,28.2653421366427,22.1783104818556,0.316011120628178,0.405450430580328,0.821687657318618,0,0.358053391334963,0,0,0.147689527174577,0.100966449948148,0,0,0.292373642219257,0,0.116876902181569,0.226730383615211,2.44184548711471,0.62799699626633,0.335769232728157,11.5913756419314,0.187682475451182,0.36630324853453,0,0,136.105194070713,143.621473790239,132.338863604501,114.969778987927,179.491620179908,191.114656039594,167.405580057488,166.618845192962,151.349564600724,149.114969784524,1.3492355185943,7.98049746802062,7.85374586469017,7.53630822911712,6.49800804146745,9.37601893095072,7.3341420174533,9.27157757575024,11.2321723357135,10.1078884705519,10.6461305953901,11.8834595073228,6.367622507952,10.308049537184,8.55788487438638,10.9547548995107,10.429589335037,10.6100071255038,13.1867488257058,10.4511233295422,7.88599280486455,8.69631450180754,8.10683045820891,8.1393993314104,11.0107975085937,9.81529451543447,9.3293266165114,6.83981249738391,8.55565917228929,7.2948495315506,11.1516917036724,9.55493479042966,6.13846564754534,8.6764631064141,6.75173138433995,14.2392029424629,9.12333272937093,7.52048689169044,3.82576664137687,2.64709702943419,2.086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| |||
|short_description=p1@Dock3 | |||
}} |
Revision as of 16:44, 14 September 2013
Short description: | p1@Dock3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dock3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000167053, ENSMUST00000169164_5end |
EntrezGene: | Dock3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.13e-15 | 33 |
neuronal stem cell | 1.13e-15 | 33 |
neuroblast | 1.13e-15 | 33 |
electrically signaling cell | 1.13e-15 | 33 |
CNS neuron (sensu Vertebrata) | 5.31e-15 | 23 |
neuroblast (sensu Vertebrata) | 5.31e-15 | 23 |
ectodermal cell | 1.08e-14 | 44 |
neurectodermal cell | 1.08e-14 | 44 |
neural cell | 2.26e-14 | 43 |
electrically responsive cell | 3.78e-11 | 39 |
electrically active cell | 3.78e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.00e-34 | 95 |
ectoderm | 1.00e-34 | 95 |
presumptive ectoderm | 1.00e-34 | 95 |
nervous system | 2.14e-34 | 75 |
central nervous system | 2.42e-34 | 73 |
neurectoderm | 3.59e-32 | 64 |
neural plate | 3.59e-32 | 64 |
presumptive neural plate | 3.59e-32 | 64 |
ecto-epithelium | 3.17e-30 | 73 |
regional part of nervous system | 1.51e-29 | 54 |
neural tube | 6.10e-28 | 52 |
neural rod | 6.10e-28 | 52 |
future spinal cord | 6.10e-28 | 52 |
neural keel | 6.10e-28 | 52 |
pre-chordal neural plate | 2.47e-25 | 49 |
brain | 1.21e-24 | 47 |
future brain | 1.21e-24 | 47 |
regional part of brain | 9.35e-24 | 46 |
gray matter | 1.36e-22 | 34 |
anterior neural tube | 9.93e-22 | 40 |
regional part of forebrain | 5.73e-21 | 39 |
forebrain | 5.73e-21 | 39 |
future forebrain | 5.73e-21 | 39 |
brain grey matter | 2.41e-19 | 29 |
regional part of telencephalon | 2.41e-19 | 29 |
telencephalon | 2.41e-19 | 29 |
structure with developmental contribution from neural crest | 3.54e-19 | 92 |
cerebral cortex | 4.72e-14 | 21 |
cerebral hemisphere | 4.72e-14 | 21 |
pallium | 4.72e-14 | 21 |
regional part of cerebral cortex | 1.22e-11 | 17 |
occipital lobe | 2.01e-09 | 10 |
visual cortex | 2.01e-09 | 10 |
neocortex | 2.01e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.