FFCP PHASE1:Mm9::chr1:176103019..176103047,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20739|HGNC=|MCL_coexpression_id=10|UniProt=P08032|association_with_transcript=112bp_to_ENSMUST00000027817,NM_011465,uc007dsw.2_5end|description=CAGE_peak_3_at_Spna1_5end|id=chr1:176103019..176103047,+|ontology_enrichment_celltype=CL:0000680!2.96e-07!6;CL:0000183!2.96e-07!6;CL:0000187!2.96e-07!6;CL:0000056!2.96e-07!6|ontology_enrichment_celltype_v019_2=CL:0002494,2.87e-13,3;CL:0000737,2.87e-13,3;CL:0000746,2.87e-13,3;CL:0000513,2.87e-13,3;CL:0000680,7.13e-07,6;CL:0000187,7.13e-07,6;CL:0000056,7.13e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004872!8.83e-26!33;UBERON:0004535!2.89e-23!23;UBERON:0001009!2.89e-23!23;UBERON:0007100!7.11e-22!18;UBERON:0000948!7.11e-22!18;UBERON:0005498!7.11e-22!18;UBERON:0004140!7.11e-22!18;UBERON:0009881!7.11e-22!18;UBERON:0004141!7.11e-22!18;UBERON:0003084!7.11e-22!18;UBERON:0007005!7.11e-22!18;UBERON:0004139!7.11e-22!18;UBERON:0004291!7.11e-22!18;UBERON:0003914!9.99e-19!47;UBERON:0001048!1.74e-09!147;UBERON:0003081!3.12e-09!88;UBERON:0000926!4.74e-07!193;UBERON:0004120!4.74e-07!193;UBERON:0006603!4.74e-07!193|ontology_enrichment_uberon_v019_2=UBERON:0007100,4.49e-52,18;UBERON:0000948,4.49e-52,18;UBERON:0005498,4.49e-52,18;UBERON:0004140,4.49e-52,18;UBERON:0009881,4.49e-52,18;UBERON:0004141,4.49e-52,18;UBERON:0003084,4.49e-52,18;UBERON:0007005,4.49e-52,18;UBERON:0004139,4.49e-52,18;UBERON:0004291,4.49e-52,18;UBERON:0004535,3.05e-40,23;UBERON:0001009,3.05e-40,23;UBERON:0004872,5.00e-35,33;UBERON:0003103,2.19e-20,43;UBERON:0003914,1.94e-18,47;UBERON:0003081,3.58e-13,87;UBERON:0000926,9.60e-13,120;UBERON:0004120,9.60e-13,120;UBERON:0006603,9.60e-13,120;UBERON:0001048,8.33e-10,134;UBERON:0010314,3.75e-08,92|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,1.61980213911861,0.699561878128147,0.157731082679119,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,0.811015449756117,0.183546752161682,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,3.34437266846731,2.57880095944881,1.54701627683233,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0.230615497256059,0,0.23517741427141,0,0,0.144599356919912,0,0.161766849947409,0,0.969750506270444,0,0,0,0,0,0,0.127070227073065,0,0,0,0,0,0,0,0.203678727700633,0,0,0.210441855886474,0.260240885925407,0.229902104433473,0.360124259610698,0,0,0,0.187403449119458,0.258703370739016,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0.621377317606506,0.703578179943289,0.720248245844059,2.3674473558521,1.57411385397923,1.85120535464854,3.25547522650571,5.09719462659276,2.21854150497622,4.93679549740441,8.53670813211295,5.35054143002648,9.21059920779594,9.66020507280623,9.12603647570528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500535317148282,0.393117990226406,0.449724224769707,0.608580364165509,0.482354319504834,0.25462585178142,0.287696137450811,0.324270453550071,0.274561413188081,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0.238043640886014,0,0.157635144106191,0,0.159454768657487,0.327726629431476,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42366414172764,0,0.16488625294148,0,0.0603129249281559,0,0,0,0,0.683483523191411,0.206386867963223,0,1.31857919903284,1.0935538217682,0.457556346413045,0,0,0,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0.165458490457098,0,0.387479470433193,1.35164900392623,1.99507305697782,2.604087696879,0.419437377702843,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375364950902364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0,0,0.183843508450014,0.44449345560323,0,0.320919209591815,0,0,0,0,0.192075457214608,0.0574354689556133,0,0.231768651889711,0,0.412085900803307,0,0,0.177475806159338,0,0,0.0941093804153306,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0.233931608445408,0.214871054048298,0,0,0|short_description=p3@Spna1}} | ||
|EntrezGene=20739 | |||
|HGNC= | |||
|MCL_coexpression_id=10 | |||
|UniProt=P08032 | |||
|association_with_transcript=112bp_to_ENSMUST00000027817,NM_011465,uc007dsw.2_5end | |||
|description=CAGE_peak_3_at_Spna1_5end | |||
|id=chr1:176103019..176103047,+ | |||
|ontology_enrichment_celltype=CL:0000680!2.96e-07!6;CL:0000183!2.96e-07!6;CL:0000187!2.96e-07!6;CL:0000056!2.96e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002494,2.87e-13,3;CL:0000737,2.87e-13,3;CL:0000746,2.87e-13,3;CL:0000513,2.87e-13,3;CL:0000680,7.13e-07,6;CL:0000187,7.13e-07,6;CL:0000056,7.13e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!8.83e-26!33;UBERON:0004535!2.89e-23!23;UBERON:0001009!2.89e-23!23;UBERON:0007100!7.11e-22!18;UBERON:0000948!7.11e-22!18;UBERON:0005498!7.11e-22!18;UBERON:0004140!7.11e-22!18;UBERON:0009881!7.11e-22!18;UBERON:0004141!7.11e-22!18;UBERON:0003084!7.11e-22!18;UBERON:0007005!7.11e-22!18;UBERON:0004139!7.11e-22!18;UBERON:0004291!7.11e-22!18;UBERON:0003914!9.99e-19!47;UBERON:0001048!1.74e-09!147;UBERON:0003081!3.12e-09!88;UBERON:0000926!4.74e-07!193;UBERON:0004120!4.74e-07!193;UBERON:0006603!4.74e-07!193 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,4.49e-52,18;UBERON:0000948,4.49e-52,18;UBERON:0005498,4.49e-52,18;UBERON:0004140,4.49e-52,18;UBERON:0009881,4.49e-52,18;UBERON:0004141,4.49e-52,18;UBERON:0003084,4.49e-52,18;UBERON:0007005,4.49e-52,18;UBERON:0004139,4.49e-52,18;UBERON:0004291,4.49e-52,18;UBERON:0004535,3.05e-40,23;UBERON:0001009,3.05e-40,23;UBERON:0004872,5.00e-35,33;UBERON:0003103,2.19e-20,43;UBERON:0003914,1.94e-18,47;UBERON:0003081,3.58e-13,87;UBERON:0000926,9.60e-13,120;UBERON:0004120,9.60e-13,120;UBERON:0006603,9.60e-13,120;UBERON:0001048,8.33e-10,134;UBERON:0010314,3.75e-08,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,1.61980213911861,0.699561878128147,0.157731082679119,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.881277725829041,0.811015449756117,0.183546752161682,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,3.34437266846731,2.57880095944881,1.54701627683233,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0.230615497256059,0,0.23517741427141,0,0,0.144599356919912,0,0.161766849947409,0,0.969750506270444,0,0,0,0,0,0,0.127070227073065,0,0,0,0,0,0,0,0.203678727700633,0,0,0.210441855886474,0.260240885925407,0.229902104433473,0.360124259610698,0,0,0,0.187403449119458,0.258703370739016,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0.621377317606506,0.703578179943289,0.720248245844059,2.3674473558521,1.57411385397923,1.85120535464854,3.25547522650571,5.09719462659276,2.21854150497622,4.93679549740441,8.53670813211295,5.35054143002648,9.21059920779594,9.66020507280623,9.12603647570528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500535317148282,0.393117990226406,0.449724224769707,0.608580364165509,0.482354319504834,0.25462585178142,0.287696137450811,0.324270453550071,0.274561413188081,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0.238043640886014,0,0.157635144106191,0,0.159454768657487,0.327726629431476,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42366414172764,0,0.16488625294148,0,0.0603129249281559,0,0,0,0,0.683483523191411,0.206386867963223,0,1.31857919903284,1.0935538217682,0.457556346413045,0,0,0,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0.165458490457098,0,0.387479470433193,1.35164900392623,1.99507305697782,2.604087696879,0.419437377702843,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375364950902364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0,0,0.183843508450014,0.44449345560323,0,0.320919209591815,0,0,0,0,0.192075457214608,0.0574354689556133,0,0.231768651889711,0,0.412085900803307,0,0,0.177475806159338,0,0,0.0941093804153306,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0.233931608445408,0.214871054048298,0,0,0 | |||
|short_description=p3@Spna1 | |||
}} |
Revision as of 19:49, 13 September 2013
Short description: | p3@Spna1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Spna1_5end |
Coexpression cluster: | MCL_coexpression_mm9:10 |
Association with transcript: | 112bp_to_ENSMUST00000027817, NM_011465, uc007dsw.2_5end |
EntrezGene: | Spna1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiocyte | 2.87e-13 | 3 |
striated muscle cell | 2.87e-13 | 3 |
cardiac muscle cell | 2.87e-13 | 3 |
cardiac muscle myoblast | 2.87e-13 | 3 |
muscle precursor cell | 7.13e-07 | 6 |
muscle cell | 7.13e-07 | 6 |
myoblast | 7.13e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 4.49e-52 | 18 |
heart | 4.49e-52 | 18 |
primitive heart tube | 4.49e-52 | 18 |
primary heart field | 4.49e-52 | 18 |
anterior lateral plate mesoderm | 4.49e-52 | 18 |
heart tube | 4.49e-52 | 18 |
heart primordium | 4.49e-52 | 18 |
cardiac mesoderm | 4.49e-52 | 18 |
cardiogenic plate | 4.49e-52 | 18 |
heart rudiment | 4.49e-52 | 18 |
cardiovascular system | 3.05e-40 | 23 |
circulatory system | 3.05e-40 | 23 |
splanchnic layer of lateral plate mesoderm | 5.00e-35 | 33 |
compound organ | 2.19e-20 | 43 |
epithelial tube | 1.94e-18 | 47 |
lateral plate mesoderm | 3.58e-13 | 87 |
mesoderm | 9.60e-13 | 120 |
mesoderm-derived structure | 9.60e-13 | 120 |
presumptive mesoderm | 9.60e-13 | 120 |
primordium | 8.33e-10 | 134 |
structure with developmental contribution from neural crest | 3.75e-08 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.