FFCP PHASE1:Mm9::chr11:53577408..53577418,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=26|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:53577408..53577418,-|id=chr11:53577408..53577418,-|ontology_enrichment_celltype=CL:0000624!7.26e-10!8;CL:0000791!1.30e-08!9;CL:0000789!1.30e-08!9;CL:0002420!1.30e-08!9;CL:0002419!1.30e-08!9;CL:0000790!1.30e-08!9;CL:0000838!8.60e-08!12;CL:0000542!4.60e-07!13;CL:0000051!4.60e-07!13;CL:0000084!8.50e-07!11;CL:0000827!8.50e-07!11|ontology_enrichment_celltype_v019_2=CL:0000213,2.87e-30,1;CL:0002078,2.87e-30,1;CL:0000115,2.87e-30,1;CL:0002262,2.87e-30,1;CL:1000398,2.87e-30,1;CL:0000815,5.62e-30,1;CL:0000792,5.62e-30,1;CL:0000624,1.72e-15,8;CL:0000791,6.62e-14,9;CL:0000789,6.62e-14,9;CL:0002420,6.62e-14,9;CL:0002419,6.62e-14,9;CL:0000790,6.62e-14,9;CL:0000084,1.36e-11,11;CL:0000827,1.36e-11,11;CL:0000215,4.56e-11,3;CL:0000838,1.01e-10,12;CL:0000542,5.52e-10,13;CL:0000051,5.52e-10,13;CL:0000738,6.83e-08,17;CL:0002087,6.83e-08,17;CL:0000182,3.64e-07,5|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002394,2.87e-30,1;UBERON:0001281,2.87e-30,1;UBERON:0000353,2.87e-30,1;UBERON:0003497,2.87e-30,1;UBERON:0003909,2.87e-30,1;UBERON:0003928,2.87e-30,1;UBERON:0003835,2.87e-30,1;UBERON:0003513,2.87e-30,1;UBERON:0001280,2.87e-30,1;UBERON:0004647,2.87e-30,1;UBERON:0002294,2.87e-30,1;UBERON:0001173,2.87e-30,1;UBERON:0004912,2.87e-30,1;UBERON:0005171,2.87e-30,1;UBERON:0000055,3.64e-07,5;UBERON:0007500,3.64e-07,5;UBERON:0001981,3.64e-07,5;UBERON:0002049,3.64e-07,5;UBERON:0007798,3.64e-07,5;UBERON:0004537,3.64e-07,5;UBERON:0006965,3.64e-07,5|phase1_expression=0,0,0,0,0.500895729946347,0,0,1.67860320474049,0.140788722151667,0.468129052643987,0,0.0797721589953364,1.36960583944965,0.961624426608971,0,0,0,0.157731082679119,0,0,0.17008658030214,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0.523523743973798,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0.725362142011344,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0,0.075726193333184,0,9.27566363845369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0.252722758433675,0,0,0,0,0,0,0,0.0937017245597288,0,0.215567992932842,0,0,0,0,0,0,0,0,0,0.568326998791185,0,0.234526059981096,0,0.23674473558521,0,0,0,0,0.116765342367169,0,0,0,0,0,0.134206418760372,0,0,0,0,0,0,0,0.201683524623343,0,0.380451252225118,0,0.329397909448022,0.251335208800269,0.198956472041151,0.19496408711912,0,0.432276099749388,0,0,0,0,0.203651327845314,0.193952487167626,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0.160550589987792,0,0.163934945376675,0,0,0,0,0.238968797952552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0.120625849856312,0,0,0,0,0,0.206386867963223,0,0,0,0,0,0.419854356970974,0.414599921413271,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0.240390899039938,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0,0,0.0574354689556133,0,0,0,0,0.147198920134397,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0|short_description=p@chr11:53577408..53577418,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=26 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:53577408..53577418,- | |||
|id=chr11:53577408..53577418,- | |||
|ontology_enrichment_celltype=CL:0000624!7.26e-10!8;CL:0000791!1.30e-08!9;CL:0000789!1.30e-08!9;CL:0002420!1.30e-08!9;CL:0002419!1.30e-08!9;CL:0000790!1.30e-08!9;CL:0000838!8.60e-08!12;CL:0000542!4.60e-07!13;CL:0000051!4.60e-07!13;CL:0000084!8.50e-07!11;CL:0000827!8.50e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,2.87e-30,1;CL:0002078,2.87e-30,1;CL:0000115,2.87e-30,1;CL:0002262,2.87e-30,1;CL:1000398,2.87e-30,1;CL:0000815,5.62e-30,1;CL:0000792,5.62e-30,1;CL:0000624,1.72e-15,8;CL:0000791,6.62e-14,9;CL:0000789,6.62e-14,9;CL:0002420,6.62e-14,9;CL:0002419,6.62e-14,9;CL:0000790,6.62e-14,9;CL:0000084,1.36e-11,11;CL:0000827,1.36e-11,11;CL:0000215,4.56e-11,3;CL:0000838,1.01e-10,12;CL:0000542,5.52e-10,13;CL:0000051,5.52e-10,13;CL:0000738,6.83e-08,17;CL:0002087,6.83e-08,17;CL:0000182,3.64e-07,5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002394,2.87e-30,1;UBERON:0001281,2.87e-30,1;UBERON:0000353,2.87e-30,1;UBERON:0003497,2.87e-30,1;UBERON:0003909,2.87e-30,1;UBERON:0003928,2.87e-30,1;UBERON:0003835,2.87e-30,1;UBERON:0003513,2.87e-30,1;UBERON:0001280,2.87e-30,1;UBERON:0004647,2.87e-30,1;UBERON:0002294,2.87e-30,1;UBERON:0001173,2.87e-30,1;UBERON:0004912,2.87e-30,1;UBERON:0005171,2.87e-30,1;UBERON:0000055,3.64e-07,5;UBERON:0007500,3.64e-07,5;UBERON:0001981,3.64e-07,5;UBERON:0002049,3.64e-07,5;UBERON:0007798,3.64e-07,5;UBERON:0004537,3.64e-07,5;UBERON:0006965,3.64e-07,5 | |||
|phase1_expression=0,0,0,0,0.500895729946347,0,0,1.67860320474049,0.140788722151667,0.468129052643987,0,0.0797721589953364,1.36960583944965,0.961624426608971,0,0,0,0.157731082679119,0,0,0.17008658030214,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0.523523743973798,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0.725362142011344,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0,0.075726193333184,0,9.27566363845369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0.252722758433675,0,0,0,0,0,0,0,0.0937017245597288,0,0.215567992932842,0,0,0,0,0,0,0,0,0,0.568326998791185,0,0.234526059981096,0,0.23674473558521,0,0,0,0,0.116765342367169,0,0,0,0,0,0.134206418760372,0,0,0,0,0,0,0,0.201683524623343,0,0.380451252225118,0,0.329397909448022,0.251335208800269,0.198956472041151,0.19496408711912,0,0.432276099749388,0,0,0,0,0.203651327845314,0.193952487167626,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0.160550589987792,0,0.163934945376675,0,0,0,0,0.238968797952552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0.120625849856312,0,0,0,0,0,0.206386867963223,0,0,0,0,0,0.419854356970974,0.414599921413271,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0.240390899039938,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0,0,0.0574354689556133,0,0,0,0,0.147198920134397,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0 | |||
|short_description=p@chr11:53577408..53577418,- | |||
}} |
Revision as of 19:57, 12 September 2013
Short description: | p@chr11:53577408..53577418, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:53577408..53577418, - |
Coexpression cluster: | MCL_coexpression_mm9:26 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 2.87e-30 | 1 |
meso-epithelial cell | 2.87e-30 | 1 |
endothelial cell | 2.87e-30 | 1 |
endothelial cell of sinusoid | 2.87e-30 | 1 |
endothelial cell of hepatic sinusoid | 2.87e-30 | 1 |
regulatory T cell | 5.62e-30 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.62e-30 | 1 |
CD4-positive, alpha-beta T cell | 1.72e-15 | 8 |
mature alpha-beta T cell | 6.62e-14 | 9 |
alpha-beta T cell | 6.62e-14 | 9 |
immature T cell | 6.62e-14 | 9 |
mature T cell | 6.62e-14 | 9 |
immature alpha-beta T cell | 6.62e-14 | 9 |
T cell | 1.36e-11 | 11 |
pro-T cell | 1.36e-11 | 11 |
barrier cell | 4.56e-11 | 3 |
lymphoid lineage restricted progenitor cell | 1.01e-10 | 12 |
lymphocyte | 5.52e-10 | 13 |
common lymphoid progenitor | 5.52e-10 | 13 |
leukocyte | 6.83e-08 | 17 |
nongranular leukocyte | 6.83e-08 | 17 |
hepatocyte | 3.64e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
bile duct | 2.87e-30 | 1 |
hepatic sinusoid | 2.87e-30 | 1 |
parenchyma | 2.87e-30 | 1 |
abdomen blood vessel | 2.87e-30 | 1 |
sinusoid | 2.87e-30 | 1 |
digestive system duct | 2.87e-30 | 1 |
abdominal segment blood vessel | 2.87e-30 | 1 |
trunk blood vessel | 2.87e-30 | 1 |
liver parenchyma | 2.87e-30 | 1 |
liver lobule | 2.87e-30 | 1 |
biliary system | 2.87e-30 | 1 |
biliary tree | 2.87e-30 | 1 |
biliary bud | 2.87e-30 | 1 |
hepatic duct | 2.87e-30 | 1 |
vessel | 3.64e-07 | 5 |
epithelial tube open at both ends | 3.64e-07 | 5 |
blood vessel | 3.64e-07 | 5 |
vasculature | 3.64e-07 | 5 |
vascular system | 3.64e-07 | 5 |
blood vasculature | 3.64e-07 | 5 |
vascular cord | 3.64e-07 | 5 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.