FFCP PHASE1:Mm9::chr1:16509365..16509417,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=29819|HGNC=|MCL_coexpression_id=1|UniProt=Q8CJ67,D3Z6D2|association_with_transcript=0bp_to_ENSMUST00000027052,ENSMUST00000149320,ENSMUST00000162751,NM_001111272,NM_025303,uc007ajn.2,uc007ajo.2,uc007ajq.2,uc007ajr.2_5end|description=CAGE_peak_2_at_Stau2_5end|id=chr1:16509365..16509417,-|ontology_enrichment_celltype=CL:0000117!3.26e-13!23;CL:0000337!3.26e-13!23;CL:0000540!1.21e-11!33;CL:0000047!1.21e-11!33;CL:0000031!1.21e-11!33;CL:0000404!1.21e-11!33;CL:0000393!3.53e-09!39;CL:0000211!3.53e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.34e-13,23;CL:0000337,2.34e-13,23;CL:0000540,9.10e-12,33;CL:0000047,9.10e-12,33;CL:0000031,9.10e-12,33;CL:0000404,9.10e-12,33;CL:0000393,2.84e-09,39;CL:0000211,2.84e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!6.14e-16!63;UBERON:0002346!8.08e-16!71;UBERON:0003075!8.08e-16!71;UBERON:0007284!8.08e-16!71;UBERON:0002020!1.48e-15!34;UBERON:0001017!1.72e-15!73;UBERON:0005743!1.72e-15!73;UBERON:0001049!4.48e-15!52;UBERON:0005068!4.48e-15!52;UBERON:0006241!4.48e-15!52;UBERON:0007135!4.48e-15!52;UBERON:0004121!5.60e-15!102;UBERON:0000924!5.60e-15!102;UBERON:0006601!5.60e-15!102;UBERON:0000073!1.68e-14!75;UBERON:0001016!1.68e-14!75;UBERON:0000955!7.48e-14!50;UBERON:0006238!7.48e-14!50;UBERON:0002616!2.16e-13!49;UBERON:0002791!1.94e-12!29;UBERON:0003528!1.94e-12!29;UBERON:0001893!1.94e-12!29;UBERON:0003056!3.69e-12!49;UBERON:0003080!4.01e-11!40;UBERON:0002780!1.52e-10!39;UBERON:0001890!1.52e-10!39;UBERON:0006240!1.52e-10!39;UBERON:0000956!8.67e-08!21;UBERON:0001869!8.67e-08!21;UBERON:0000203!8.67e-08!21;UBERON:0004111!3.09e-07!122;UBERON:0000025!7.37e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.56e-19,92;UBERON:0000073,2.30e-16,54;UBERON:0002346,1.30e-15,64;UBERON:0003075,1.30e-15,64;UBERON:0007284,1.30e-15,64;UBERON:0002020,1.34e-15,34;UBERON:0001017,1.91e-15,73;UBERON:0001049,4.77e-15,52;UBERON:0005068,4.77e-15,52;UBERON:0006241,4.77e-15,52;UBERON:0007135,4.77e-15,52;UBERON:0010371,1.92e-14,73;UBERON:0001016,2.38e-14,75;UBERON:0004121,4.24e-14,95;UBERON:0000924,4.24e-14,95;UBERON:0006601,4.24e-14,95;UBERON:0003528,1.89e-12,29;UBERON:0002791,1.89e-12,29;UBERON:0001893,1.89e-12,29;UBERON:0003056,5.75e-12,49;UBERON:0000955,6.09e-12,47;UBERON:0006238,6.09e-12,47;UBERON:0002616,1.71e-11,46;UBERON:0003080,4.64e-11,40;UBERON:0002780,1.77e-10,39;UBERON:0001890,1.77e-10,39;UBERON:0006240,1.77e-10,39;UBERON:0000956,9.32e-08,21;UBERON:0001869,9.32e-08,21;UBERON:0000203,9.32e-08,21;UBERON:0004111,2.90e-07,122;UBERON:0000025,6.98e-07,114|phase1_expression=5.60520964866779,2.79180326111489,0.909998478779072,2.72217790176147,1.00179145989269,1.17515490338323,1.16806320297763,0.129123323441576,0,0,0.171217968225505,0,0,0.174840804837995,0.666219523631325,0.202475267389826,0,1.10411757875383,0.137114433605739,0.42438965179803,4.5072943780067,0.0992909512008853,0.261199789138935,1.27993938234725,1.83527424853736,4.59385571292016,1.7230479846363,2.80112602491656,0.950117097281869,2.77233142735924,0.886922042621219,0,0,0,1.73310971850765,1.82858109894342,1.42918549383658,0,0.7813353445238,0,0,0,0,1.00717454380462,1.21652317463417,1.65192076945513,0,0.872100625521786,1.75748946187577,0.777719596297134,0.979904951377538,0,1.17447824240415,0,0,2.05807548828758,1.43266719969378,2.06268836910977,7.68802551266472,2.64495489636016,3.80298842103708,0.677689064138264,0.889294796111139,0.449949858640699,0,0,1.19840044207362,1.15265491596466,8.29516898467821,6.61529097825284,8.62332341540666,11.7116903605559,10.1599528837742,6.98197555525238,10.2554653989513,2.75765635983006,14.3150645299205,23.2390955315042,17.664751324468,8.17694983927202,11.8019060247108,11.4600941522487,20.9387249251036,14.069065250792,17.4190002465564,11.490514833473,16.2303716110977,11.7431650869939,0.832988126665025,1.43585964202892,0.289864488701678,1.72084775396277,0,1.07940638327563,0.649776417447669,0.448026887097336,3.23022166303029,1.36344258062446,1.55871602761721,0.70667914902068,3.66192891419369,3.84979432242953,5.09610479413291,14.2213340630666,1.73192832808971,2.02687892380079,0.505524445014783,2.05530983494308,1.03575153458869,3.71105347662062,1.21439728736295,2.74018930480927,1.15307748628029,3.61734337326294,3.17489509266403,3.14166478324189,0.741584903203122,2.74738778147832,0,2.58826959915855,2.20841518460394,1.45462575940567,3.72783522436244,9.36898550436951,7.54008144528438,0,0.958520996047362,0.599902730993408,1.77898317902291,12.8819949888148,8.23501085073528,10.3036568732549,9.56033761057521,15.0872119824895,11.6361304953354,11.1946471516753,3.36069900706044,1.61729061793121,2.77995034277042,4.41927897361595,0.910843100738926,2.98872735763515,3.96136685571768,3.76762044589288,3.33378845841506,2.94661556655154,3.65436725782942,2.58703370739016,2.58681591519411,2.64748512234947,1.75951124163949,4.16471891612392,1.66828349535359,1.0447564995665,1.02891068203972,2.38841120182192,0.702213187313235,1.02939162845886,0.8524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| ||
|EntrezGene=29819 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8CJ67,D3Z6D2 | |||
|association_with_transcript=0bp_to_ENSMUST00000027052,ENSMUST00000149320,ENSMUST00000162751,NM_001111272,NM_025303,uc007ajn.2,uc007ajo.2,uc007ajq.2,uc007ajr.2_5end | |||
|description=CAGE_peak_2_at_Stau2_5end | |||
|id=chr1:16509365..16509417,- | |||
|ontology_enrichment_celltype=CL:0000117!3.26e-13!23;CL:0000337!3.26e-13!23;CL:0000540!1.21e-11!33;CL:0000047!1.21e-11!33;CL:0000031!1.21e-11!33;CL:0000404!1.21e-11!33;CL:0000393!3.53e-09!39;CL:0000211!3.53e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.34e-13,23;CL:0000337,2.34e-13,23;CL:0000540,9.10e-12,33;CL:0000047,9.10e-12,33;CL:0000031,9.10e-12,33;CL:0000404,9.10e-12,33;CL:0000393,2.84e-09,39;CL:0000211,2.84e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!6.14e-16!63;UBERON:0002346!8.08e-16!71;UBERON:0003075!8.08e-16!71;UBERON:0007284!8.08e-16!71;UBERON:0002020!1.48e-15!34;UBERON:0001017!1.72e-15!73;UBERON:0005743!1.72e-15!73;UBERON:0001049!4.48e-15!52;UBERON:0005068!4.48e-15!52;UBERON:0006241!4.48e-15!52;UBERON:0007135!4.48e-15!52;UBERON:0004121!5.60e-15!102;UBERON:0000924!5.60e-15!102;UBERON:0006601!5.60e-15!102;UBERON:0000073!1.68e-14!75;UBERON:0001016!1.68e-14!75;UBERON:0000955!7.48e-14!50;UBERON:0006238!7.48e-14!50;UBERON:0002616!2.16e-13!49;UBERON:0002791!1.94e-12!29;UBERON:0003528!1.94e-12!29;UBERON:0001893!1.94e-12!29;UBERON:0003056!3.69e-12!49;UBERON:0003080!4.01e-11!40;UBERON:0002780!1.52e-10!39;UBERON:0001890!1.52e-10!39;UBERON:0006240!1.52e-10!39;UBERON:0000956!8.67e-08!21;UBERON:0001869!8.67e-08!21;UBERON:0000203!8.67e-08!21;UBERON:0004111!3.09e-07!122;UBERON:0000025!7.37e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.56e-19,92;UBERON:0000073,2.30e-16,54;UBERON:0002346,1.30e-15,64;UBERON:0003075,1.30e-15,64;UBERON:0007284,1.30e-15,64;UBERON:0002020,1.34e-15,34;UBERON:0001017,1.91e-15,73;UBERON:0001049,4.77e-15,52;UBERON:0005068,4.77e-15,52;UBERON:0006241,4.77e-15,52;UBERON:0007135,4.77e-15,52;UBERON:0010371,1.92e-14,73;UBERON:0001016,2.38e-14,75;UBERON:0004121,4.24e-14,95;UBERON:0000924,4.24e-14,95;UBERON:0006601,4.24e-14,95;UBERON:0003528,1.89e-12,29;UBERON:0002791,1.89e-12,29;UBERON:0001893,1.89e-12,29;UBERON:0003056,5.75e-12,49;UBERON:0000955,6.09e-12,47;UBERON:0006238,6.09e-12,47;UBERON:0002616,1.71e-11,46;UBERON:0003080,4.64e-11,40;UBERON:0002780,1.77e-10,39;UBERON:0001890,1.77e-10,39;UBERON:0006240,1.77e-10,39;UBERON:0000956,9.32e-08,21;UBERON:0001869,9.32e-08,21;UBERON:0000203,9.32e-08,21;UBERON:0004111,2.90e-07,122;UBERON:0000025,6.98e-07,114 | |||
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| |||
|short_description=p2@Stau2 | |||
}} |
Revision as of 19:28, 13 September 2013
Short description: | p2@Stau2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Stau2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000027052, ENSMUST00000149320, ENSMUST00000162751, NM_001111272, NM_025303, uc007ajn.2, uc007ajo.2, uc007ajq.2, uc007ajr.2_5end |
EntrezGene: | Stau2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.34e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.34e-13 | 23 |
neuron | 9.10e-12 | 33 |
neuronal stem cell | 9.10e-12 | 33 |
neuroblast | 9.10e-12 | 33 |
electrically signaling cell | 9.10e-12 | 33 |
electrically responsive cell | 2.84e-09 | 39 |
electrically active cell | 2.84e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.56e-19 | 92 |
regional part of nervous system | 2.30e-16 | 54 |
neurectoderm | 1.30e-15 | 64 |
neural plate | 1.30e-15 | 64 |
presumptive neural plate | 1.30e-15 | 64 |
gray matter | 1.34e-15 | 34 |
central nervous system | 1.91e-15 | 73 |
neural tube | 4.77e-15 | 52 |
neural rod | 4.77e-15 | 52 |
future spinal cord | 4.77e-15 | 52 |
neural keel | 4.77e-15 | 52 |
ecto-epithelium | 1.92e-14 | 73 |
nervous system | 2.38e-14 | 75 |
ectoderm-derived structure | 4.24e-14 | 95 |
ectoderm | 4.24e-14 | 95 |
presumptive ectoderm | 4.24e-14 | 95 |
brain grey matter | 1.89e-12 | 29 |
regional part of telencephalon | 1.89e-12 | 29 |
telencephalon | 1.89e-12 | 29 |
pre-chordal neural plate | 5.75e-12 | 49 |
brain | 6.09e-12 | 47 |
future brain | 6.09e-12 | 47 |
regional part of brain | 1.71e-11 | 46 |
anterior neural tube | 4.64e-11 | 40 |
regional part of forebrain | 1.77e-10 | 39 |
forebrain | 1.77e-10 | 39 |
future forebrain | 1.77e-10 | 39 |
cerebral cortex | 9.32e-08 | 21 |
cerebral hemisphere | 9.32e-08 | 21 |
pallium | 9.32e-08 | 21 |
anatomical conduit | 2.90e-07 | 122 |
tube | 6.98e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.