FFCP PHASE1:Mm9::chr8:34710046..34710063,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19053|HGNC=|UniProt=P62715,Q8BN07|association_with_transcript=-29bp_to_ENSMUST00000009774,NM_017374,uc009lkd.1_5end|description=CAGE_peak_3_at_Ppp2cb_5end|id=chr8:34710046..34710063,+|ontology_enrichment_celltype=CL:0000117!4.40e-11!23;CL:0000337!4.40e-11!23;CL:0000221!1.07e-07!44;CL:0000133!1.07e-07!44;CL:0002319!1.89e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,3.46e-11,23;CL:0000337,3.46e-11,23;CL:0000221,8.31e-08,44;CL:0000133,8.31e-08,44;CL:0002319,1.47e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.81e-19!63;UBERON:0001049!9.91e-19!52;UBERON:0005068!9.91e-19!52;UBERON:0006241!9.91e-19!52;UBERON:0007135!9.91e-19!52;UBERON:0000073!1.16e-17!75;UBERON:0001016!1.16e-17!75;UBERON:0000955!1.25e-17!50;UBERON:0006238!1.25e-17!50;UBERON:0001017!4.37e-17!73;UBERON:0005743!4.37e-17!73;UBERON:0002616!5.07e-17!49;UBERON:0002020!5.40e-17!34;UBERON:0004121!8.95e-17!102;UBERON:0000924!8.95e-17!102;UBERON:0006601!8.95e-17!102;UBERON:0003056!2.38e-15!49;UBERON:0002346!3.82e-15!71;UBERON:0003075!3.82e-15!71;UBERON:0007284!3.82e-15!71;UBERON:0003080!6.19e-15!40;UBERON:0002780!2.10e-14!39;UBERON:0001890!2.10e-14!39;UBERON:0006240!2.10e-14!39;UBERON:0002791!2.21e-14!29;UBERON:0003528!2.21e-14!29;UBERON:0001893!2.21e-14!29;UBERON:0007811!4.07e-14!86;UBERON:0000956!5.02e-11!21;UBERON:0001869!5.02e-11!21;UBERON:0000203!5.02e-11!21;UBERON:0000153!2.52e-10!94;UBERON:0002619!5.03e-09!17;UBERON:0000064!7.97e-09!99;UBERON:0002021!3.14e-07!10;UBERON:0000411!3.14e-07!10;UBERON:0001950!3.14e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.10e-20,54;UBERON:0001049,6.03e-19,52;UBERON:0005068,6.03e-19,52;UBERON:0006241,6.03e-19,52;UBERON:0007135,6.03e-19,52;UBERON:0004121,1.80e-18,95;UBERON:0000924,1.80e-18,95;UBERON:0006601,1.80e-18,95;UBERON:0001016,6.44e-18,75;UBERON:0001017,2.46e-17,73;UBERON:0002346,3.61e-17,64;UBERON:0003075,3.61e-17,64;UBERON:0007284,3.61e-17,64;UBERON:0002020,3.65e-17,34;UBERON:0010371,1.66e-16,73;UBERON:0000955,2.16e-16,47;UBERON:0006238,2.16e-16,47;UBERON:0002616,8.66e-16,46;UBERON:0003056,1.68e-15,49;UBERON:0003080,4.40e-15,40;UBERON:0002780,1.52e-14,39;UBERON:0001890,1.52e-14,39;UBERON:0006240,1.52e-14,39;UBERON:0003528,1.60e-14,29;UBERON:0002791,1.60e-14,29;UBERON:0001893,1.60e-14,29;UBERON:0000956,3.95e-11,21;UBERON:0001869,3.95e-11,21;UBERON:0000203,3.95e-11,21;UBERON:0010314,9.30e-11,92;UBERON:0002619,4.16e-09,17;UBERON:0002021,2.72e-07,10;UBERON:0000411,2.72e-07,10;UBERON:0001950,2.72e-07,10|phase1_expression=3.20297694209588,2.44282785347553,2.72999543633722,2.72217790176147,2.00358291978539,1.6787927191189,2.33612640595526,0.903863264091034,0.563154888606667,1.17032263160997,0.513653904676515,0.957265907944037,1.02720437958723,0.874204024189974,1.33243904726265,0.607425802169478,1.39912375625629,1.73504190947031,0.685572168028694,1.69755860719212,1.10556277196391,0.992909512008853,0.783599367416806,1.11994695955385,1.37645568640302,1.14846392823004,1.29228598847722,0.646413698057667,2.85035129184561,1.00812051903972,2.21730510655305,1.27006134691926,0.61506478758457,0,2.02196133825892,2.65975432573588,2.24586291888606,2.51118978442145,0.7813353445238,2.61761871986899,2.35292595212406,0,1.94204141212461,0.881277725829041,0.608261587317087,1.10128051297009,3.12956537739216,3.70642765846759,1.97717564461025,2.52758868796568,2.51975558925653,1.43752564364972,0.838913030288682,0.725362142011344,0.672187598284928,0.771778308107841,1.14613375975503,0.515672092277442,5.26022798234954,3.70293685490423,6.33831403506179,1.69422266034566,1.77858959222228,2.2497492932035,0,3.5524005747305,1.19840044207362,5.37905627450176,4.45865332926454,3.24014251996058,2.94454945891935,6.28432165688368,3.75476519617743,3.1847607795888,4.88811902193005,1.83843757322004,2.20231761998777,4.08599481872601,7.21950706304344,2.50583946687368,6.95306091378313,1.56274011167028,3.62937898701795,3.93933827022176,4.43114918552749,4.12480019663135,2.98980529678116,2.98239113320481,2.65041676666144,2.11600368298999,1.44932244350839,0,0,0,0,0.448026887097336,1.82577746171277,2.04516387093669,1.29893002301434,2.47337702157238,2.39433813620357,5.13305909657271,5.09610479413291,7.11066703153331,1.73192832808971,2.02687892380079,2.02209778005913,0.45673551887624,0.258937883647172,1.63286352971307,1.90833859442749,0.608930956624282,0.922461989024234,1.50722640552623,1.76383060703557,1.75933227861546,1.97755974187499,0.578397427679647,0,1.13236794963186,1.32504911076236,0.484875253135222,1.86391761218122,0.585561594023094,1.67557365450764,1.27728527604296,1.43778149407104,2.99951365496704,1.65191295194984,3.89455662452539,5.03250663100489,5.90575454930463,5.73620256634512,5.8814555185976,4.36354893575076,3.56930778749067,3.7680564624617,1.49288364732112,2.0217820674694,1.68353484709179,2.08192708740326,3.44853156650209,2.34080768746954,1.80845781402858,1.97305847538851,2.562274405697,2.34254311399322,1.03481348295606,0.646703978798527,0.945530400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| ||
|EntrezGene=19053 | |||
|HGNC= | |||
|UniProt=P62715,Q8BN07 | |||
|association_with_transcript=-29bp_to_ENSMUST00000009774,NM_017374,uc009lkd.1_5end | |||
|description=CAGE_peak_3_at_Ppp2cb_5end | |||
|id=chr8:34710046..34710063,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.40e-11!23;CL:0000337!4.40e-11!23;CL:0000221!1.07e-07!44;CL:0000133!1.07e-07!44;CL:0002319!1.89e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.46e-11,23;CL:0000337,3.46e-11,23;CL:0000221,8.31e-08,44;CL:0000133,8.31e-08,44;CL:0002319,1.47e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.81e-19!63;UBERON:0001049!9.91e-19!52;UBERON:0005068!9.91e-19!52;UBERON:0006241!9.91e-19!52;UBERON:0007135!9.91e-19!52;UBERON:0000073!1.16e-17!75;UBERON:0001016!1.16e-17!75;UBERON:0000955!1.25e-17!50;UBERON:0006238!1.25e-17!50;UBERON:0001017!4.37e-17!73;UBERON:0005743!4.37e-17!73;UBERON:0002616!5.07e-17!49;UBERON:0002020!5.40e-17!34;UBERON:0004121!8.95e-17!102;UBERON:0000924!8.95e-17!102;UBERON:0006601!8.95e-17!102;UBERON:0003056!2.38e-15!49;UBERON:0002346!3.82e-15!71;UBERON:0003075!3.82e-15!71;UBERON:0007284!3.82e-15!71;UBERON:0003080!6.19e-15!40;UBERON:0002780!2.10e-14!39;UBERON:0001890!2.10e-14!39;UBERON:0006240!2.10e-14!39;UBERON:0002791!2.21e-14!29;UBERON:0003528!2.21e-14!29;UBERON:0001893!2.21e-14!29;UBERON:0007811!4.07e-14!86;UBERON:0000956!5.02e-11!21;UBERON:0001869!5.02e-11!21;UBERON:0000203!5.02e-11!21;UBERON:0000153!2.52e-10!94;UBERON:0002619!5.03e-09!17;UBERON:0000064!7.97e-09!99;UBERON:0002021!3.14e-07!10;UBERON:0000411!3.14e-07!10;UBERON:0001950!3.14e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.10e-20,54;UBERON:0001049,6.03e-19,52;UBERON:0005068,6.03e-19,52;UBERON:0006241,6.03e-19,52;UBERON:0007135,6.03e-19,52;UBERON:0004121,1.80e-18,95;UBERON:0000924,1.80e-18,95;UBERON:0006601,1.80e-18,95;UBERON:0001016,6.44e-18,75;UBERON:0001017,2.46e-17,73;UBERON:0002346,3.61e-17,64;UBERON:0003075,3.61e-17,64;UBERON:0007284,3.61e-17,64;UBERON:0002020,3.65e-17,34;UBERON:0010371,1.66e-16,73;UBERON:0000955,2.16e-16,47;UBERON:0006238,2.16e-16,47;UBERON:0002616,8.66e-16,46;UBERON:0003056,1.68e-15,49;UBERON:0003080,4.40e-15,40;UBERON:0002780,1.52e-14,39;UBERON:0001890,1.52e-14,39;UBERON:0006240,1.52e-14,39;UBERON:0003528,1.60e-14,29;UBERON:0002791,1.60e-14,29;UBERON:0001893,1.60e-14,29;UBERON:0000956,3.95e-11,21;UBERON:0001869,3.95e-11,21;UBERON:0000203,3.95e-11,21;UBERON:0010314,9.30e-11,92;UBERON:0002619,4.16e-09,17;UBERON:0002021,2.72e-07,10;UBERON:0000411,2.72e-07,10;UBERON:0001950,2.72e-07,10 | |||
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| |||
|short_description=p3@Ppp2cb | |||
}} |
Revision as of 15:30, 14 September 2013
Short description: | p3@Ppp2cb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ppp2cb_5end |
Coexpression cluster: | NA |
Association with transcript: | -29bp_to_ENSMUST00000009774, NM_017374, uc009lkd.1_5end |
EntrezGene: | Ppp2cb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.46e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.46e-11 | 23 |
ectodermal cell | 8.31e-08 | 44 |
neurectodermal cell | 8.31e-08 | 44 |
neural cell | 1.47e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.10e-20 | 54 |
neural tube | 6.03e-19 | 52 |
neural rod | 6.03e-19 | 52 |
future spinal cord | 6.03e-19 | 52 |
neural keel | 6.03e-19 | 52 |
ectoderm-derived structure | 1.80e-18 | 95 |
ectoderm | 1.80e-18 | 95 |
presumptive ectoderm | 1.80e-18 | 95 |
nervous system | 6.44e-18 | 75 |
central nervous system | 2.46e-17 | 73 |
neurectoderm | 3.61e-17 | 64 |
neural plate | 3.61e-17 | 64 |
presumptive neural plate | 3.61e-17 | 64 |
gray matter | 3.65e-17 | 34 |
ecto-epithelium | 1.66e-16 | 73 |
brain | 2.16e-16 | 47 |
future brain | 2.16e-16 | 47 |
regional part of brain | 8.66e-16 | 46 |
pre-chordal neural plate | 1.68e-15 | 49 |
anterior neural tube | 4.40e-15 | 40 |
regional part of forebrain | 1.52e-14 | 39 |
forebrain | 1.52e-14 | 39 |
future forebrain | 1.52e-14 | 39 |
brain grey matter | 1.60e-14 | 29 |
regional part of telencephalon | 1.60e-14 | 29 |
telencephalon | 1.60e-14 | 29 |
cerebral cortex | 3.95e-11 | 21 |
cerebral hemisphere | 3.95e-11 | 21 |
pallium | 3.95e-11 | 21 |
structure with developmental contribution from neural crest | 9.30e-11 | 92 |
regional part of cerebral cortex | 4.16e-09 | 17 |
occipital lobe | 2.72e-07 | 10 |
visual cortex | 2.72e-07 | 10 |
neocortex | 2.72e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.