FFCP PHASE1:Mm9::chr7:87065485..87065544,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11778|HGNC=|MCL_coexpression_id=1392|UniProt=Q8BSZ2,Q6PAL3,Q8BNE3|association_with_transcript=0bp_to_ENSMUST00000075657,NM_009682,uc009hzf.2_5end|description=CAGE_peak_1_at_Ap3s2_5end|id=chr7:87065485..87065544,-|ontology_enrichment_celltype=CL:0000117!7.96e-10!23;CL:0000337!7.96e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,7.96e-10,23;CL:0000337,7.96e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.02e-23!71;UBERON:0003075!3.02e-23!71;UBERON:0007284!3.02e-23!71;UBERON:0000033!3.38e-23!63;UBERON:0001049!1.53e-20!52;UBERON:0005068!1.53e-20!52;UBERON:0006241!1.53e-20!52;UBERON:0007135!1.53e-20!52;UBERON:0003056!5.03e-20!49;UBERON:0000955!8.59e-19!50;UBERON:0006238!8.59e-19!50;UBERON:0002616!3.44e-18!49;UBERON:0004121!4.89e-18!102;UBERON:0000924!4.89e-18!102;UBERON:0006601!4.89e-18!102;UBERON:0001017!6.45e-17!73;UBERON:0005743!6.45e-17!73;UBERON:0000073!2.45e-16!75;UBERON:0001016!2.45e-16!75;UBERON:0003080!2.76e-15!40;UBERON:0002780!1.08e-14!39;UBERON:0001890!1.08e-14!39;UBERON:0006240!1.08e-14!39;UBERON:0000153!5.03e-14!94;UBERON:0007811!1.09e-12!86;UBERON:0002020!1.96e-12!34;UBERON:0002791!1.65e-10!29;UBERON:0003528!1.65e-10!29;UBERON:0001893!1.65e-10!29;UBERON:0000025!6.89e-09!114;UBERON:0004111!1.10e-08!122;UBERON:0000475!1.23e-08!200;UBERON:0000468!3.65e-08!333;UBERON:0000923!2.21e-07!314;UBERON:0005291!2.21e-07!314;UBERON:0006598!2.21e-07!314;UBERON:0002532!2.21e-07!314;UBERON:0000956!2.94e-07!21;UBERON:0001869!2.94e-07!21;UBERON:0000203!2.94e-07!21;UBERON:0000922!7.23e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.87e-23,64;UBERON:0003075,1.87e-23,64;UBERON:0007284,1.87e-23,64;UBERON:0010314,2.41e-22,92;UBERON:0010371,9.83e-21,73;UBERON:0001049,1.53e-20,52;UBERON:0005068,1.53e-20,52;UBERON:0006241,1.53e-20,52;UBERON:0007135,1.53e-20,52;UBERON:0000073,2.50e-20,54;UBERON:0003056,5.03e-20,49;UBERON:0000955,2.72e-18,47;UBERON:0006238,2.72e-18,47;UBERON:0002616,1.09e-17,46;UBERON:0004121,1.27e-17,95;UBERON:0000924,1.27e-17,95;UBERON:0006601,1.27e-17,95;UBERON:0001017,6.45e-17,73;UBERON:0001016,2.45e-16,75;UBERON:0003080,2.76e-15,40;UBERON:0002780,1.08e-14,39;UBERON:0001890,1.08e-14,39;UBERON:0006240,1.08e-14,39;UBERON:0002020,1.96e-12,34;UBERON:0003528,1.65e-10,29;UBERON:0002791,1.65e-10,29;UBERON:0001893,1.65e-10,29;UBERON:0000025,6.89e-09,114;UBERON:0004111,1.10e-08,122;UBERON:0000956,2.94e-07,21;UBERON:0001869,2.94e-07,21;UBERON:0000203,2.94e-07,21|phase1_expression=42.5995933298752,23.0323769041978,34.5799421936047,17.5429242557961,16.0286633582831,18.9703577260435,22.1932008565749,15.1074288426644,5.490760163915,3.04283884218592,29.9631444394634,12.5242289622678,19.3456824822262,15.9979336426765,14.9899392817048,17.412872995525,11.8925519281785,26.1833597247337,23.3094537129756,18.2487550273153,30.8707143248383,34.4539600667072,22.9855814442263,38.7181663160044,28.6761601333963,26.988902313406,25.8457197695445,30.3814438087104,28.1234660795433,18.3981994724749,22.1730510655305,11.4305521222734,17.221814052368,0,34.9510459899042,29.5897668738116,28.5837098767317,14.2300754450549,14.0640362014284,18.8468547830567,9.99993529652724,11.6117732442936,14.5653105909346,30.4670299500897,29.7034408473178,38.5448179539531,48.5082633495784,36.4102011155346,45.4750398260357,36.7472509250396,31.3569584440812,30.188038516644,13.9259563027921,18.1340535502836,10.0828139742739,29.327575708098,33.5244124728345,23.2052441524849,73.2385588311744,68.7688273053643,62.1154775436056,37.9505875917428,33.7932022522233,24.2972923665978,16.8107281636386,17.7620028736525,37.4500138148006,46.1061966385865,54.3333568496423,49.4121734293988,52.5812403378455,62.8432165688368,57.6466891883711,58.1831296271032,66.4209114156378,38.6071890376209,34.1359231098105,53.756369333864,47.4644187761792,74.9114114307501,76.5751576952169,70.8442183957194,52.765586811261,34.3285192119325,42.4779128819532,36.5339445987348,50.8266900452797,62.0710154598251,30.8962868799391,34.3850598485874,16.8121403446973,30.1148356943485,15.6393406752783,24.2866436237018,27.9403859502498,34.0500434193975,29.4933282276679,38.0059619349069,25.1992424464783,20.1403557470894,43.0980864516642,11.5493829672886,5.09610479413291,0,19.9171757730317,21.7889484308585,30.8369911459018,28.7743376892031,59.0378374715552,31.4697334817428,36.2584332941224,36.8403228757691,44.5087909704193,44.1617336819184,40.4505152546825,36.3176448942762,20.517182321953,37.595832799177,30.0767587662957,28.1474318908492,31.1386541029155,23.7588874036259,39.1422698558057,50.0655162889746,51.104996462483,42.1504141094176,26.2395122667965,43.1929966315254,28.8449415455857,61.4141621559773,59.0175777636028,66.9737696761567,59.2740931855663,60.6045633872883,60.0507448777129,54.1885818646311,41.2449423593781,26.1254638281195,37.6556910066175,52.1895802598455,65.1903419243146,50.578462975364,61.7613105232348,47.9241320717574,55.7899293040888,66.8753619886916,50.9737381604925,55.1038179674103,66.6105098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| ||
|EntrezGene=11778 | |||
|HGNC= | |||
|MCL_coexpression_id=1392 | |||
|UniProt=Q8BSZ2,Q6PAL3,Q8BNE3 | |||
|association_with_transcript=0bp_to_ENSMUST00000075657,NM_009682,uc009hzf.2_5end | |||
|description=CAGE_peak_1_at_Ap3s2_5end | |||
|id=chr7:87065485..87065544,- | |||
|ontology_enrichment_celltype=CL:0000117!7.96e-10!23;CL:0000337!7.96e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.96e-10,23;CL:0000337,7.96e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.02e-23!71;UBERON:0003075!3.02e-23!71;UBERON:0007284!3.02e-23!71;UBERON:0000033!3.38e-23!63;UBERON:0001049!1.53e-20!52;UBERON:0005068!1.53e-20!52;UBERON:0006241!1.53e-20!52;UBERON:0007135!1.53e-20!52;UBERON:0003056!5.03e-20!49;UBERON:0000955!8.59e-19!50;UBERON:0006238!8.59e-19!50;UBERON:0002616!3.44e-18!49;UBERON:0004121!4.89e-18!102;UBERON:0000924!4.89e-18!102;UBERON:0006601!4.89e-18!102;UBERON:0001017!6.45e-17!73;UBERON:0005743!6.45e-17!73;UBERON:0000073!2.45e-16!75;UBERON:0001016!2.45e-16!75;UBERON:0003080!2.76e-15!40;UBERON:0002780!1.08e-14!39;UBERON:0001890!1.08e-14!39;UBERON:0006240!1.08e-14!39;UBERON:0000153!5.03e-14!94;UBERON:0007811!1.09e-12!86;UBERON:0002020!1.96e-12!34;UBERON:0002791!1.65e-10!29;UBERON:0003528!1.65e-10!29;UBERON:0001893!1.65e-10!29;UBERON:0000025!6.89e-09!114;UBERON:0004111!1.10e-08!122;UBERON:0000475!1.23e-08!200;UBERON:0000468!3.65e-08!333;UBERON:0000923!2.21e-07!314;UBERON:0005291!2.21e-07!314;UBERON:0006598!2.21e-07!314;UBERON:0002532!2.21e-07!314;UBERON:0000956!2.94e-07!21;UBERON:0001869!2.94e-07!21;UBERON:0000203!2.94e-07!21;UBERON:0000922!7.23e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.87e-23,64;UBERON:0003075,1.87e-23,64;UBERON:0007284,1.87e-23,64;UBERON:0010314,2.41e-22,92;UBERON:0010371,9.83e-21,73;UBERON:0001049,1.53e-20,52;UBERON:0005068,1.53e-20,52;UBERON:0006241,1.53e-20,52;UBERON:0007135,1.53e-20,52;UBERON:0000073,2.50e-20,54;UBERON:0003056,5.03e-20,49;UBERON:0000955,2.72e-18,47;UBERON:0006238,2.72e-18,47;UBERON:0002616,1.09e-17,46;UBERON:0004121,1.27e-17,95;UBERON:0000924,1.27e-17,95;UBERON:0006601,1.27e-17,95;UBERON:0001017,6.45e-17,73;UBERON:0001016,2.45e-16,75;UBERON:0003080,2.76e-15,40;UBERON:0002780,1.08e-14,39;UBERON:0001890,1.08e-14,39;UBERON:0006240,1.08e-14,39;UBERON:0002020,1.96e-12,34;UBERON:0003528,1.65e-10,29;UBERON:0002791,1.65e-10,29;UBERON:0001893,1.65e-10,29;UBERON:0000025,6.89e-09,114;UBERON:0004111,1.10e-08,122;UBERON:0000956,2.94e-07,21;UBERON:0001869,2.94e-07,21;UBERON:0000203,2.94e-07,21 | |||
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| |||
|short_description=p1@Ap3s2 | |||
}} |
Revision as of 14:17, 14 September 2013
Short description: | p1@Ap3s2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ap3s2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1392 |
Association with transcript: | 0bp_to_ENSMUST00000075657, NM_009682, uc009hzf.2_5end |
EntrezGene: | Ap3s2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.96e-10 | 23 |
neuroblast (sensu Vertebrata) | 7.96e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.87e-23 | 64 |
neural plate | 1.87e-23 | 64 |
presumptive neural plate | 1.87e-23 | 64 |
structure with developmental contribution from neural crest | 2.41e-22 | 92 |
ecto-epithelium | 9.83e-21 | 73 |
neural tube | 1.53e-20 | 52 |
neural rod | 1.53e-20 | 52 |
future spinal cord | 1.53e-20 | 52 |
neural keel | 1.53e-20 | 52 |
regional part of nervous system | 2.50e-20 | 54 |
pre-chordal neural plate | 5.03e-20 | 49 |
brain | 2.72e-18 | 47 |
future brain | 2.72e-18 | 47 |
regional part of brain | 1.09e-17 | 46 |
ectoderm-derived structure | 1.27e-17 | 95 |
ectoderm | 1.27e-17 | 95 |
presumptive ectoderm | 1.27e-17 | 95 |
central nervous system | 6.45e-17 | 73 |
nervous system | 2.45e-16 | 75 |
anterior neural tube | 2.76e-15 | 40 |
regional part of forebrain | 1.08e-14 | 39 |
forebrain | 1.08e-14 | 39 |
future forebrain | 1.08e-14 | 39 |
gray matter | 1.96e-12 | 34 |
brain grey matter | 1.65e-10 | 29 |
regional part of telencephalon | 1.65e-10 | 29 |
telencephalon | 1.65e-10 | 29 |
tube | 6.89e-09 | 114 |
anatomical conduit | 1.10e-08 | 122 |
cerebral cortex | 2.94e-07 | 21 |
cerebral hemisphere | 2.94e-07 | 21 |
pallium | 2.94e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.