FFCP PHASE1:Mm9::chr3:28162277..28162308,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=665113|HGNC=|MCL_coexpression_id=2|UniProt=|association_with_transcript=79bp_to_ENSMUST00000161214,ENSMUST00000161234_5end|description=CAGE_peak_2_at_Tnik_5end|id=chr3:28162277..28162308,+|ontology_enrichment_celltype=CL:0000117!5.28e-09!23;CL:0000337!5.28e-09!23;CL:0000540!1.05e-07!33;CL:0000047!1.05e-07!33;CL:0000031!1.05e-07!33;CL:0000404!1.05e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.56e-09,23;CL:0000337,4.56e-09,23;CL:0000540,9.33e-08,33;CL:0000047,9.33e-08,33;CL:0000031,9.33e-08,33;CL:0000404,9.33e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!1.21e-14!86;UBERON:0002020!3.61e-14!34;UBERON:0000064!1.82e-13!99;UBERON:0000073!3.36e-13!75;UBERON:0001016!3.36e-13!75;UBERON:0001017!1.56e-12!73;UBERON:0005743!1.56e-12!73;UBERON:0001049!1.84e-12!52;UBERON:0005068!1.84e-12!52;UBERON:0006241!1.84e-12!52;UBERON:0007135!1.84e-12!52;UBERON:0000153!1.95e-12!94;UBERON:0002791!4.32e-12!29;UBERON:0003528!4.32e-12!29;UBERON:0001893!4.32e-12!29;UBERON:0000955!8.73e-12!50;UBERON:0006238!8.73e-12!50;UBERON:0004121!1.91e-11!102;UBERON:0000924!1.91e-11!102;UBERON:0006601!1.91e-11!102;UBERON:0002616!3.51e-11!49;UBERON:0000033!4.59e-11!63;UBERON:0003080!3.44e-10!40;UBERON:0003056!5.69e-10!49;UBERON:0002780!9.53e-10!39;UBERON:0001890!9.53e-10!39;UBERON:0006240!9.53e-10!39;UBERON:0002346!9.63e-10!71;UBERON:0003075!9.63e-10!71;UBERON:0007284!9.63e-10!71;UBERON:0000956!3.83e-09!21;UBERON:0001869!3.83e-09!21;UBERON:0000203!3.83e-09!21;UBERON:0002021!1.35e-07!10;UBERON:0000411!1.35e-07!10;UBERON:0001950!1.35e-07!10;UBERON:0002619!4.28e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002020,3.85e-14,34;UBERON:0004121,2.34e-13,95;UBERON:0000924,2.34e-13,95;UBERON:0006601,2.34e-13,95;UBERON:0001016,2.39e-13,75;UBERON:0000073,2.68e-13,54;UBERON:0001017,1.13e-12,73;UBERON:0001049,1.47e-12,52;UBERON:0005068,1.47e-12,52;UBERON:0006241,1.47e-12,52;UBERON:0007135,1.47e-12,52;UBERON:0003528,4.77e-12,29;UBERON:0002791,4.77e-12,29;UBERON:0001893,4.77e-12,29;UBERON:0002346,9.26e-12,64;UBERON:0003075,9.26e-12,64;UBERON:0007284,9.26e-12,64;UBERON:0010371,1.12e-11,73;UBERON:0000955,7.43e-11,47;UBERON:0006238,7.43e-11,47;UBERON:0002616,2.92e-10,46;UBERON:0003080,3.58e-10,40;UBERON:0003056,5.83e-10,49;UBERON:0002780,9.96e-10,39;UBERON:0001890,9.96e-10,39;UBERON:0006240,9.96e-10,39;UBERON:0000956,4.47e-09,21;UBERON:0001869,4.47e-09,21;UBERON:0000203,4.47e-09,21;UBERON:0010314,4.47e-08,92;UBERON:0002021,1.20e-07,10;UBERON:0000411,1.20e-07,10;UBERON:0001950,1.20e-07,10;UBERON:0002619,5.13e-07,17|phase1_expression=1.60148847104794,9.07336059862339,15.0149748998547,29.3390284967625,32.5582224465126,7.72244650794693,5.60670337429262,61.0753319878656,27.03143465312,39.7909694747389,9.93064215707929,8.29630453551499,49.9906131399121,49.9170497812475,1.66554880907831,3.23960427823721,0.699561878128147,11.987562283613,13.3001000597567,5.09267582157636,8.92954546586233,0,0,7.83962871687693,5.50582274561208,6.89078356938024,9.90752591165872,6.46413698057667,3.6104449696711,6.04872311423834,4.6563407237614,10.1604907753541,7.38077745101484,0,1.44425809875637,1.32987716286794,2.24586291888606,0,0,0,0,0.683045484958446,0,0,0,0,0,1.09012578190223,0.659058548203415,1.74986909166855,0.419959264876088,0,9.56360854529097,57.3036092188962,40.3312558970957,1.02903774414379,1.71920063963254,2.06268836910977,16.1853168687678,14.2827564403449,14.5781222806421,1.0165335962074,0,0,0,0.7104801149461,2.09720077362883,1.92109152660777,29.5515395079161,20.520902626417,26.5009451302741,12.5686433137674,11.9269012113871,9.79926393719632,7.47594673942244,10.1114066527102,12.1127469099328,13.1517958227743,13.9781945263182,18.2003077067668,14.729510619988,15.106487746146,5.58365998002762,13.5063026407603,11.3070703354839,17.9723437138937,21.0710087582672,19.0127434741807,9.16286939331527,18.4394606660557,1.44932244350839,0,2.03991400112325,0,0,0,2.80888840263504,0.511290967734173,0,0.35333957451034,3.38024207464033,0,0,0,1.08245520505607,1.26679932737549,3.0331466700887,5.25245846707676,22.0097201100096,1.92974780784272,1.73485326766136,2.13125834818499,1.84492397804847,2.71300752994721,4.58595957829249,0.628332956648377,0,1.59059292611903,7.07688441559899,5.50007289821191,5.74187947997023,4.84875253135222,0,13.7606974595427,16.3368431314495,14.8165092020983,1.31796636956512,0.599902730993408,0.254140454146129,18.574039286198,49.4100651044117,38.1989230423108,35.2863369990321,49.0973678074235,19.9476522777178,35.3685953487712,1.2220723662038,4.60305791257344,4.80173241023982,5.05060454127538,1.69156575851515,1.83921683546778,4.50155324513373,6.78171680260718,10.6817303667585,8.19927809823039,7.96464658757695,9.31332134660456,0.646703978798527,0.945530400839096,1.40760899331159,1.09597866213787,0.834141747676794,2.089512999133,3.49829631893504,1.39323986772945,0,0.257347907114715,0,0.621377317606506,1.40715635988658,2.52086886045421,2.13070262026689,2.16440654922144,2.93107514486019,3.022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| ||
|EntrezGene=665113 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt= | |||
|association_with_transcript=79bp_to_ENSMUST00000161214,ENSMUST00000161234_5end | |||
|description=CAGE_peak_2_at_Tnik_5end | |||
|id=chr3:28162277..28162308,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.28e-09!23;CL:0000337!5.28e-09!23;CL:0000540!1.05e-07!33;CL:0000047!1.05e-07!33;CL:0000031!1.05e-07!33;CL:0000404!1.05e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.56e-09,23;CL:0000337,4.56e-09,23;CL:0000540,9.33e-08,33;CL:0000047,9.33e-08,33;CL:0000031,9.33e-08,33;CL:0000404,9.33e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!1.21e-14!86;UBERON:0002020!3.61e-14!34;UBERON:0000064!1.82e-13!99;UBERON:0000073!3.36e-13!75;UBERON:0001016!3.36e-13!75;UBERON:0001017!1.56e-12!73;UBERON:0005743!1.56e-12!73;UBERON:0001049!1.84e-12!52;UBERON:0005068!1.84e-12!52;UBERON:0006241!1.84e-12!52;UBERON:0007135!1.84e-12!52;UBERON:0000153!1.95e-12!94;UBERON:0002791!4.32e-12!29;UBERON:0003528!4.32e-12!29;UBERON:0001893!4.32e-12!29;UBERON:0000955!8.73e-12!50;UBERON:0006238!8.73e-12!50;UBERON:0004121!1.91e-11!102;UBERON:0000924!1.91e-11!102;UBERON:0006601!1.91e-11!102;UBERON:0002616!3.51e-11!49;UBERON:0000033!4.59e-11!63;UBERON:0003080!3.44e-10!40;UBERON:0003056!5.69e-10!49;UBERON:0002780!9.53e-10!39;UBERON:0001890!9.53e-10!39;UBERON:0006240!9.53e-10!39;UBERON:0002346!9.63e-10!71;UBERON:0003075!9.63e-10!71;UBERON:0007284!9.63e-10!71;UBERON:0000956!3.83e-09!21;UBERON:0001869!3.83e-09!21;UBERON:0000203!3.83e-09!21;UBERON:0002021!1.35e-07!10;UBERON:0000411!1.35e-07!10;UBERON:0001950!1.35e-07!10;UBERON:0002619!4.28e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,3.85e-14,34;UBERON:0004121,2.34e-13,95;UBERON:0000924,2.34e-13,95;UBERON:0006601,2.34e-13,95;UBERON:0001016,2.39e-13,75;UBERON:0000073,2.68e-13,54;UBERON:0001017,1.13e-12,73;UBERON:0001049,1.47e-12,52;UBERON:0005068,1.47e-12,52;UBERON:0006241,1.47e-12,52;UBERON:0007135,1.47e-12,52;UBERON:0003528,4.77e-12,29;UBERON:0002791,4.77e-12,29;UBERON:0001893,4.77e-12,29;UBERON:0002346,9.26e-12,64;UBERON:0003075,9.26e-12,64;UBERON:0007284,9.26e-12,64;UBERON:0010371,1.12e-11,73;UBERON:0000955,7.43e-11,47;UBERON:0006238,7.43e-11,47;UBERON:0002616,2.92e-10,46;UBERON:0003080,3.58e-10,40;UBERON:0003056,5.83e-10,49;UBERON:0002780,9.96e-10,39;UBERON:0001890,9.96e-10,39;UBERON:0006240,9.96e-10,39;UBERON:0000956,4.47e-09,21;UBERON:0001869,4.47e-09,21;UBERON:0000203,4.47e-09,21;UBERON:0010314,4.47e-08,92;UBERON:0002021,1.20e-07,10;UBERON:0000411,1.20e-07,10;UBERON:0001950,1.20e-07,10;UBERON:0002619,5.13e-07,17 | |||
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| |||
|short_description=p2@Tnik | |||
}} |
Revision as of 02:03, 14 September 2013
Short description: | p2@Tnik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tnik_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 79bp_to_ENSMUST00000161214, ENSMUST00000161234_5end |
EntrezGene: | Tnik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.56e-09 | 23 |
neuroblast (sensu Vertebrata) | 4.56e-09 | 23 |
neuron | 9.33e-08 | 33 |
neuronal stem cell | 9.33e-08 | 33 |
neuroblast | 9.33e-08 | 33 |
electrically signaling cell | 9.33e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
gray matter | 3.85e-14 | 34 |
ectoderm-derived structure | 2.34e-13 | 95 |
ectoderm | 2.34e-13 | 95 |
presumptive ectoderm | 2.34e-13 | 95 |
nervous system | 2.39e-13 | 75 |
regional part of nervous system | 2.68e-13 | 54 |
central nervous system | 1.13e-12 | 73 |
neural tube | 1.47e-12 | 52 |
neural rod | 1.47e-12 | 52 |
future spinal cord | 1.47e-12 | 52 |
neural keel | 1.47e-12 | 52 |
brain grey matter | 4.77e-12 | 29 |
regional part of telencephalon | 4.77e-12 | 29 |
telencephalon | 4.77e-12 | 29 |
neurectoderm | 9.26e-12 | 64 |
neural plate | 9.26e-12 | 64 |
presumptive neural plate | 9.26e-12 | 64 |
ecto-epithelium | 1.12e-11 | 73 |
brain | 7.43e-11 | 47 |
future brain | 7.43e-11 | 47 |
regional part of brain | 2.92e-10 | 46 |
anterior neural tube | 3.58e-10 | 40 |
pre-chordal neural plate | 5.83e-10 | 49 |
regional part of forebrain | 9.96e-10 | 39 |
forebrain | 9.96e-10 | 39 |
future forebrain | 9.96e-10 | 39 |
cerebral cortex | 4.47e-09 | 21 |
cerebral hemisphere | 4.47e-09 | 21 |
pallium | 4.47e-09 | 21 |
structure with developmental contribution from neural crest | 4.47e-08 | 92 |
occipital lobe | 1.20e-07 | 10 |
visual cortex | 1.20e-07 | 10 |
neocortex | 1.20e-07 | 10 |
regional part of cerebral cortex | 5.13e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.