FFCP PHASE1:Mm9::chr7:66484401..66484421,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22215|HGNC=|MCL_coexpression_id=1|UniProt=Q5DTH1,E9QKT1|association_with_transcript=279bp_to_ENSMUST00000085231,ENSMUST00000107537,NM_001033962,NM_011668_5end|description=CAGE_peak_3_at_Ube3a_5end|id=chr7:66484401..66484421,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!1.35e-17!86;UBERON:0000153!4.31e-17!94;UBERON:0001017!4.32e-12!73;UBERON:0005743!4.32e-12!73;UBERON:0002346!8.86e-12!71;UBERON:0003075!8.86e-12!71;UBERON:0007284!8.86e-12!71;UBERON:0001049!9.07e-12!52;UBERON:0005068!9.07e-12!52;UBERON:0006241!9.07e-12!52;UBERON:0007135!9.07e-12!52;UBERON:0000033!1.56e-11!63;UBERON:0000073!2.28e-11!75;UBERON:0001016!2.28e-11!75;UBERON:0000955!2.63e-11!50;UBERON:0006238!2.63e-11!50;UBERON:0002020!4.04e-11!34;UBERON:0002616!9.09e-11!49;UBERON:0003056!5.87e-10!49;UBERON:0004121!7.22e-10!102;UBERON:0000924!7.22e-10!102;UBERON:0006601!7.22e-10!102;UBERON:0002791!4.68e-09!29;UBERON:0003528!4.68e-09!29;UBERON:0001893!4.68e-09!29;UBERON:0003080!1.45e-08!40;UBERON:0002780!3.91e-08!39;UBERON:0001890!3.91e-08!39;UBERON:0006240!3.91e-08!39;UBERON:0002021!6.82e-08!10;UBERON:0000411!6.82e-08!10;UBERON:0001950!6.82e-08!10;UBERON:0002619!5.35e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.72e-14,64;UBERON:0003075,5.72e-14,64;UBERON:0007284,5.72e-14,64;UBERON:0010371,1.16e-13,73;UBERON:0000073,1.02e-12,54;UBERON:0001017,3.03e-12,73;UBERON:0001049,1.17e-11,52;UBERON:0005068,1.17e-11,52;UBERON:0006241,1.17e-11,52;UBERON:0007135,1.17e-11,52;UBERON:0001016,1.63e-11,75;UBERON:0004121,1.97e-11,95;UBERON:0000924,1.97e-11,95;UBERON:0006601,1.97e-11,95;UBERON:0002020,5.25e-11,34;UBERON:0003056,7.29e-10,49;UBERON:0000955,1.02e-09,47;UBERON:0006238,1.02e-09,47;UBERON:0002616,3.34e-09,46;UBERON:0003528,6.19e-09,29;UBERON:0002791,6.19e-09,29;UBERON:0001893,6.19e-09,29;UBERON:0003080,1.85e-08,40;UBERON:0002780,4.98e-08,39;UBERON:0001890,4.98e-08,39;UBERON:0006240,4.98e-08,39;UBERON:0002021,6.08e-08,10;UBERON:0000411,6.08e-08,10;UBERON:0001950,6.08e-08,10;UBERON:0010314,1.98e-07,92;UBERON:0002619,6.97e-07,17|phase1_expression=3.36312578920067,1.74487703819681,1.36499771816861,4.83942738090928,6.01074875935617,1.17515490338323,2.56973904655078,1.80772652818207,5.91312633037,6.08567768437183,4.79410311031414,4.62678522172951,3.25281386869291,3.4093956943409,1.33243904726265,1.82227740650843,0,2.36596624018678,2.60517423850904,2.12194825899015,3.57181818634493,4.96454756004426,1.30599894569468,1.43993180514066,0.22940928106717,1.72269589234506,1.7230479846363,2.58565479223067,1.33016393619462,1.51218077855958,0.221730510655305,0,0.61506478758457,0,1.1554064790051,1.16364251750945,0.612508068787107,0.837063261473815,0,1.0470474879476,1.17646297606203,0.683045484958446,0.485510353031154,0.629484089877886,1.4192770370732,0.917733760808408,1.56478268869608,0.65407546914134,1.5378032791413,2.3331587888914,0.419959264876088,0,3.35565212115473,6.5282592781021,5.37750078627942,0.257259436035947,0.573066879877513,2.06268836910977,2.42779753031517,3.1739458756322,1.26766280701236,1.0165335962074,0,0.449949858640699,0,0,0,0.768436610643109,1.97010263386108,0.675029691658453,1.89292465216244,3.71346279724945,4.41737081903227,2.20483438586917,0.958454710182364,3.67687514644008,11.0115880999389,9.06580100404833,8.90917892886212,3.03338461779446,3.65950574409639,2.6045668527838,6.42120897703176,5.6276261003168,6.41752640662602,11.490514833473,8.39992916714707,4.28718725398191,1.21161909333094,1.36028808192214,0.579728977403356,0,0.679971333707751,1.61910957491345,0.649776417447669,2.68816132258401,2.24711072210803,0.511290967734173,0.779358013808606,1.06001872353102,2.39433813620357,0,7.64415719119937,0,1.29894624606728,1.01343946190039,1.01104889002957,1.82694207550496,3.10725460376606,1.03909497345377,1.21439728736295,1.82679286987285,1.84492397804847,1.20578112442098,2.58695155698551,0.879666139307728,1.23597483867187,1.15679485535929,1.76922110389975,0.970601099684455,1.54589062922275,0.969750506270444,1.86391761218122,10.8328894894272,8.16842156572475,0.766371165625774,2.63593273913025,0.599902730993408,2.66847476853436,7.33974133083631,19.6725259212009,10.6806199295935,14.6012428961512,17.9000820131231,13.0906468072523,14.4394724130304,0.712875546952214,2.61254638281195,3.53811861807145,1.26265113531884,4.29397461776922,2.29902104433473,3.78130472591233,3.0140963567143,3.60593445502038,3.71529788826064,3.37326208415024,3.62184719034622,0.646703978798527,3.21480336285293,2.81521798662318,1.09597866213787,1.94633074457919,2.089512999133,3.2925141825271,0.796137067273973,1.40442637462647,1.80143534980301,0.568326998791185,2.07125772535502,2.34526059981096,1.80062061461015,1.89395788468168,1.57411385397923,1.54267112887378,0.465067889500816,2.14618721119695,1.5179494507732,1.15191894939436,1.64167464079095,1.70244500046297,1.02339991197733,1.75640092232841,0.805238512562231,14.5100064509248,6.38008596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| ||
|EntrezGene=22215 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q5DTH1,E9QKT1 | |||
|association_with_transcript=279bp_to_ENSMUST00000085231,ENSMUST00000107537,NM_001033962,NM_011668_5end | |||
|description=CAGE_peak_3_at_Ube3a_5end | |||
|id=chr7:66484401..66484421,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!1.35e-17!86;UBERON:0000153!4.31e-17!94;UBERON:0001017!4.32e-12!73;UBERON:0005743!4.32e-12!73;UBERON:0002346!8.86e-12!71;UBERON:0003075!8.86e-12!71;UBERON:0007284!8.86e-12!71;UBERON:0001049!9.07e-12!52;UBERON:0005068!9.07e-12!52;UBERON:0006241!9.07e-12!52;UBERON:0007135!9.07e-12!52;UBERON:0000033!1.56e-11!63;UBERON:0000073!2.28e-11!75;UBERON:0001016!2.28e-11!75;UBERON:0000955!2.63e-11!50;UBERON:0006238!2.63e-11!50;UBERON:0002020!4.04e-11!34;UBERON:0002616!9.09e-11!49;UBERON:0003056!5.87e-10!49;UBERON:0004121!7.22e-10!102;UBERON:0000924!7.22e-10!102;UBERON:0006601!7.22e-10!102;UBERON:0002791!4.68e-09!29;UBERON:0003528!4.68e-09!29;UBERON:0001893!4.68e-09!29;UBERON:0003080!1.45e-08!40;UBERON:0002780!3.91e-08!39;UBERON:0001890!3.91e-08!39;UBERON:0006240!3.91e-08!39;UBERON:0002021!6.82e-08!10;UBERON:0000411!6.82e-08!10;UBERON:0001950!6.82e-08!10;UBERON:0002619!5.35e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.72e-14,64;UBERON:0003075,5.72e-14,64;UBERON:0007284,5.72e-14,64;UBERON:0010371,1.16e-13,73;UBERON:0000073,1.02e-12,54;UBERON:0001017,3.03e-12,73;UBERON:0001049,1.17e-11,52;UBERON:0005068,1.17e-11,52;UBERON:0006241,1.17e-11,52;UBERON:0007135,1.17e-11,52;UBERON:0001016,1.63e-11,75;UBERON:0004121,1.97e-11,95;UBERON:0000924,1.97e-11,95;UBERON:0006601,1.97e-11,95;UBERON:0002020,5.25e-11,34;UBERON:0003056,7.29e-10,49;UBERON:0000955,1.02e-09,47;UBERON:0006238,1.02e-09,47;UBERON:0002616,3.34e-09,46;UBERON:0003528,6.19e-09,29;UBERON:0002791,6.19e-09,29;UBERON:0001893,6.19e-09,29;UBERON:0003080,1.85e-08,40;UBERON:0002780,4.98e-08,39;UBERON:0001890,4.98e-08,39;UBERON:0006240,4.98e-08,39;UBERON:0002021,6.08e-08,10;UBERON:0000411,6.08e-08,10;UBERON:0001950,6.08e-08,10;UBERON:0010314,1.98e-07,92;UBERON:0002619,6.97e-07,17 | |||
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| |||
|short_description=p3@Ube3a | |||
}} |
Revision as of 13:59, 14 September 2013
Short description: | p3@Ube3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ube3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 279bp_to_ENSMUST00000085231, ENSMUST00000107537, NM_001033962, NM_011668_5end |
EntrezGene: | Ube3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 5.72e-14 | 64 |
neural plate | 5.72e-14 | 64 |
presumptive neural plate | 5.72e-14 | 64 |
ecto-epithelium | 1.16e-13 | 73 |
regional part of nervous system | 1.02e-12 | 54 |
central nervous system | 3.03e-12 | 73 |
neural tube | 1.17e-11 | 52 |
neural rod | 1.17e-11 | 52 |
future spinal cord | 1.17e-11 | 52 |
neural keel | 1.17e-11 | 52 |
nervous system | 1.63e-11 | 75 |
ectoderm-derived structure | 1.97e-11 | 95 |
ectoderm | 1.97e-11 | 95 |
presumptive ectoderm | 1.97e-11 | 95 |
gray matter | 5.25e-11 | 34 |
pre-chordal neural plate | 7.29e-10 | 49 |
brain | 1.02e-09 | 47 |
future brain | 1.02e-09 | 47 |
regional part of brain | 3.34e-09 | 46 |
brain grey matter | 6.19e-09 | 29 |
regional part of telencephalon | 6.19e-09 | 29 |
telencephalon | 6.19e-09 | 29 |
anterior neural tube | 1.85e-08 | 40 |
regional part of forebrain | 4.98e-08 | 39 |
forebrain | 4.98e-08 | 39 |
future forebrain | 4.98e-08 | 39 |
occipital lobe | 6.08e-08 | 10 |
visual cortex | 6.08e-08 | 10 |
neocortex | 6.08e-08 | 10 |
structure with developmental contribution from neural crest | 1.98e-07 | 92 |
regional part of cerebral cortex | 6.97e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.