FFCP PHASE1:Mm9::chr1:135936949..135936959,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=148|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:135936949..135936959,+|id=chr1:135936949..135936959,+|ontology_enrichment_celltype=CL:0002453!2.52e-09!8;CL:0000333!4.12e-07!10;CL:0000095!4.12e-07!10;CL:0000243!4.12e-07!10;CL:0000123!4.12e-07!10;CL:0000125!4.12e-07!10;CL:0000030!4.12e-07!10;CL:0000339!4.12e-07!10|ontology_enrichment_celltype_v019_2=CL:0002605,1.78e-26,2;CL:0002604,1.78e-26,2;CL:0002453,1.47e-25,8;CL:0000333,1.42e-20,10;CL:0000095,1.42e-20,10;CL:0000243,1.42e-20,10;CL:0000123,1.42e-20,10;CL:0000125,1.42e-20,10;CL:0000030,1.42e-20,10;CL:0000339,1.42e-20,10;CL:0000128,1.37e-19,6;CL:0000126,1.37e-19,6;CL:0000127,1.37e-19,6;CL:0000192,1.31e-17,3;CL:0000359,1.31e-17,3;CL:0002539,1.31e-17,3;CL:0000514,1.31e-17,3;CL:0000680,2.61e-09,6;CL:0000187,2.61e-09,6;CL:0000056,2.61e-09,6;CL:0000222,4.11e-08,7;CL:0000878,1.52e-07,2;CL:0000129,1.52e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000055!3.53e-07!5;UBERON:0001981!3.53e-07!5;UBERON:0002049!3.53e-07!5;UBERON:0007500!3.53e-07!5;UBERON:0007798!3.53e-07!5;UBERON:0004537!3.53e-07!5;UBERON:0006965!3.53e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0001135,1.31e-17,3;UBERON:0004237,1.31e-17,3;UBERON:0004695,1.31e-17,3;UBERON:0002111,1.31e-17,3;UBERON:0004178,1.31e-17,3;UBERON:0000947,1.80e-13,4;UBERON:0001637,1.80e-13,4;UBERON:0004573,1.80e-13,4;UBERON:0003509,1.80e-13,4;UBERON:0004571,1.80e-13,4;UBERON:0010191,1.80e-13,4;UBERON:0004572,1.80e-13,4;UBERON:0000055,5.59e-11,5;UBERON:0007500,5.59e-11,5;UBERON:0001981,5.59e-11,5;UBERON:0002049,5.59e-11,5;UBERON:0007798,5.59e-11,5;UBERON:0004537,5.59e-11,5;UBERON:0006965,5.59e-11,5;UBERON:0001954,2.72e-08,7;UBERON:0003022,2.72e-08,7;UBERON:0002421,2.72e-08,7;UBERON:0000349,2.72e-08,7;UBERON:0002600,2.72e-08,7|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39203954153597,1.62203089951223,0.183546752161682,0,0.872100625521786,3.51497892375155,15.9432517240912,0.419959264876088,1.43752564364972,0,0,0,0,0.286533439938757,0,0,0.528990979272033,0,0,0,0,0,0,0.898800331555214,1.92109152660777,0,0,0,0,0.220868540951614,0,0,0,0,0.255374676170375,0.153606533256243,0,0,0,0.279182999001381,0,0.15279824777681,0.294628585473668,0,0,0,0,0.289864488701678,0,0,0,0,0,0.561777680527007,0.340860645156116,0,0,0,0,0,0,0,0,0,0.11418387971906,0.776813650941515,0,0,0,0,0,0,0,0,0.289198713839823,0,0.647067399789637,0.220841518460394,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0.20778804455956,0,0,0.497627882440372,0,0,0,0,0,0,0,0,0.0937017245597288,0.258703370739016,0,0,0,0,0.278047249225598,0.348252166522167,0.411564272815887,0,0,0,0,0.207125772535502,0,0.180062061461015,0,0,0,0,0,0,0,0.32833492815819,0,0,0,0,0,0,0,0,0,0.232236671860439,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0.339490171550376,0,0.167506257441816,0.238043640886014,0.195133647857799,0,0,0,0.163863314715738,0.172684981865896,0,0,0,0,0,0,0,0,0,0,0,0,0.238968797952552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0,0,0,0,0,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0,0.685082519770642,0,0,0,0,0,0,0.399024873401031,0.170733605754134,0,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0,0,0.147198920134397,0,0,0,0.145346416632329,0,0,0.182927972872773,0,0,0.561142271657738,0,0,0,0,0,0.249810577937946,0,0.429742108096597,1.3390183244819,0.441182838239031,0.927471342481686|short_description=p@chr1:135936949..135936959,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=148 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:135936949..135936959,+ | |||
|id=chr1:135936949..135936959,+ | |||
|ontology_enrichment_celltype=CL:0002453!2.52e-09!8;CL:0000333!4.12e-07!10;CL:0000095!4.12e-07!10;CL:0000243!4.12e-07!10;CL:0000123!4.12e-07!10;CL:0000125!4.12e-07!10;CL:0000030!4.12e-07!10;CL:0000339!4.12e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.78e-26,2;CL:0002604,1.78e-26,2;CL:0002453,1.47e-25,8;CL:0000333,1.42e-20,10;CL:0000095,1.42e-20,10;CL:0000243,1.42e-20,10;CL:0000123,1.42e-20,10;CL:0000125,1.42e-20,10;CL:0000030,1.42e-20,10;CL:0000339,1.42e-20,10;CL:0000128,1.37e-19,6;CL:0000126,1.37e-19,6;CL:0000127,1.37e-19,6;CL:0000192,1.31e-17,3;CL:0000359,1.31e-17,3;CL:0002539,1.31e-17,3;CL:0000514,1.31e-17,3;CL:0000680,2.61e-09,6;CL:0000187,2.61e-09,6;CL:0000056,2.61e-09,6;CL:0000222,4.11e-08,7;CL:0000878,1.52e-07,2;CL:0000129,1.52e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!3.53e-07!5;UBERON:0001981!3.53e-07!5;UBERON:0002049!3.53e-07!5;UBERON:0007500!3.53e-07!5;UBERON:0007798!3.53e-07!5;UBERON:0004537!3.53e-07!5;UBERON:0006965!3.53e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001135,1.31e-17,3;UBERON:0004237,1.31e-17,3;UBERON:0004695,1.31e-17,3;UBERON:0002111,1.31e-17,3;UBERON:0004178,1.31e-17,3;UBERON:0000947,1.80e-13,4;UBERON:0001637,1.80e-13,4;UBERON:0004573,1.80e-13,4;UBERON:0003509,1.80e-13,4;UBERON:0004571,1.80e-13,4;UBERON:0010191,1.80e-13,4;UBERON:0004572,1.80e-13,4;UBERON:0000055,5.59e-11,5;UBERON:0007500,5.59e-11,5;UBERON:0001981,5.59e-11,5;UBERON:0002049,5.59e-11,5;UBERON:0007798,5.59e-11,5;UBERON:0004537,5.59e-11,5;UBERON:0006965,5.59e-11,5;UBERON:0001954,2.72e-08,7;UBERON:0003022,2.72e-08,7;UBERON:0002421,2.72e-08,7;UBERON:0000349,2.72e-08,7;UBERON:0002600,2.72e-08,7 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39203954153597,1.62203089951223,0.183546752161682,0,0.872100625521786,3.51497892375155,15.9432517240912,0.419959264876088,1.43752564364972,0,0,0,0,0.286533439938757,0,0,0.528990979272033,0,0,0,0,0,0,0.898800331555214,1.92109152660777,0,0,0,0,0.220868540951614,0,0,0,0,0.255374676170375,0.153606533256243,0,0,0,0.279182999001381,0,0.15279824777681,0.294628585473668,0,0,0,0,0.289864488701678,0,0,0,0,0,0.561777680527007,0.340860645156116,0,0,0,0,0,0,0,0,0,0.11418387971906,0.776813650941515,0,0,0,0,0,0,0,0,0.289198713839823,0,0.647067399789637,0.220841518460394,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0.20778804455956,0,0,0.497627882440372,0,0,0,0,0,0,0,0,0.0937017245597288,0.258703370739016,0,0,0,0,0.278047249225598,0.348252166522167,0.411564272815887,0,0,0,0,0.207125772535502,0,0.180062061461015,0,0,0,0,0,0,0,0.32833492815819,0,0,0,0,0,0,0,0,0,0.232236671860439,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0.339490171550376,0,0.167506257441816,0.238043640886014,0.195133647857799,0,0,0,0.163863314715738,0.172684981865896,0,0,0,0,0,0,0,0,0,0,0,0,0.238968797952552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0,0,0,0,0,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0,0.685082519770642,0,0,0,0,0,0,0.399024873401031,0.170733605754134,0,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0,0,0.147198920134397,0,0,0,0.145346416632329,0,0,0.182927972872773,0,0,0.561142271657738,0,0,0,0,0,0.249810577937946,0,0.429742108096597,1.3390183244819,0.441182838239031,0.927471342481686 | |||
|short_description=p@chr1:135936949..135936959,+ | |||
}} |
Revision as of 18:55, 13 September 2013
Short description: | p@chr1:135936949..135936959, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:135936949..135936959, + |
Coexpression cluster: | MCL_coexpression_mm9:148 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.78e-26 | 2 |
astrocyte of the hippocampus | 1.78e-26 | 2 |
oligodendrocyte precursor cell | 1.47e-25 | 8 |
migratory neural crest cell | 1.42e-20 | 10 |
neuron associated cell | 1.42e-20 | 10 |
glial cell (sensu Vertebrata) | 1.42e-20 | 10 |
neuron associated cell (sensu Vertebrata) | 1.42e-20 | 10 |
glial cell | 1.42e-20 | 10 |
glioblast | 1.42e-20 | 10 |
glioblast (sensu Vertebrata) | 1.42e-20 | 10 |
oligodendrocyte | 1.37e-19 | 6 |
macroglial cell | 1.37e-19 | 6 |
astrocyte | 1.37e-19 | 6 |
smooth muscle cell | 1.31e-17 | 3 |
vascular associated smooth muscle cell | 1.31e-17 | 3 |
aortic smooth muscle cell | 1.31e-17 | 3 |
smooth muscle myoblast | 1.31e-17 | 3 |
muscle precursor cell | 2.61e-09 | 6 |
muscle cell | 2.61e-09 | 6 |
myoblast | 2.61e-09 | 6 |
mesodermal cell | 4.11e-08 | 7 |
central nervous system macrophage | 1.52e-07 | 2 |
microglial cell | 1.52e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
smooth muscle tissue | 1.31e-17 | 3 |
blood vessel smooth muscle | 1.31e-17 | 3 |
arterial system smooth muscle | 1.31e-17 | 3 |
artery smooth muscle tissue | 1.31e-17 | 3 |
aorta smooth muscle tissue | 1.31e-17 | 3 |
aorta | 1.80e-13 | 4 |
artery | 1.80e-13 | 4 |
systemic artery | 1.80e-13 | 4 |
arterial blood vessel | 1.80e-13 | 4 |
systemic arterial system | 1.80e-13 | 4 |
aortic system | 1.80e-13 | 4 |
arterial system | 1.80e-13 | 4 |
vessel | 5.59e-11 | 5 |
epithelial tube open at both ends | 5.59e-11 | 5 |
blood vessel | 5.59e-11 | 5 |
vasculature | 5.59e-11 | 5 |
vascular system | 5.59e-11 | 5 |
blood vasculature | 5.59e-11 | 5 |
vascular cord | 5.59e-11 | 5 |
Ammon's horn | 2.72e-08 | 7 |
lobe parts of cerebral cortex | 2.72e-08 | 7 |
hippocampal formation | 2.72e-08 | 7 |
limbic system | 2.72e-08 | 7 |
limbic lobe | 2.72e-08 | 7 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.