FFCP PHASE1:Mm9::chr12:60112962..60112979,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20334|HGNC=|MCL_coexpression_id=60|UniProt=Q01405,Q8C1E4|association_with_transcript=24bp_to_ENSMUST00000021375,ENSMUST00000134223,NM_009147,uc007npw.1_5end|description=CAGE_peak_3_at_Sec23a_5end|id=chr12:60112962..60112979,-|ontology_enrichment_celltype=CL:0000117!3.35e-14!23;CL:0000337!3.35e-14!23;CL:0000540!2.36e-10!33;CL:0000047!2.36e-10!33;CL:0000031!2.36e-10!33;CL:0000404!2.36e-10!33;CL:0000393!8.54e-08!39;CL:0000211!8.54e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.34e-14,23;CL:0000337,3.34e-14,23;CL:0000540,2.35e-10,33;CL:0000047,2.35e-10,33;CL:0000031,2.35e-10,33;CL:0000404,2.35e-10,33;CL:0000393,8.52e-08,39;CL:0000211,8.52e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!6.59e-21!63;UBERON:0002346!1.72e-19!71;UBERON:0003075!1.72e-19!71;UBERON:0007284!1.72e-19!71;UBERON:0001049!2.10e-19!52;UBERON:0005068!2.10e-19!52;UBERON:0006241!2.10e-19!52;UBERON:0007135!2.10e-19!52;UBERON:0003056!9.57e-19!49;UBERON:0000955!1.47e-18!50;UBERON:0006238!1.47e-18!50;UBERON:0002616!5.40e-18!49;UBERON:0001017!7.63e-18!73;UBERON:0005743!7.63e-18!73;UBERON:0002020!3.38e-17!34;UBERON:0000073!5.72e-17!75;UBERON:0001016!5.72e-17!75;UBERON:0003080!2.36e-16!40;UBERON:0002780!8.52e-16!39;UBERON:0001890!8.52e-16!39;UBERON:0006240!8.52e-16!39;UBERON:0004121!1.62e-15!102;UBERON:0000924!1.62e-15!102;UBERON:0006601!1.62e-15!102;UBERON:0002791!1.43e-14!29;UBERON:0003528!1.43e-14!29;UBERON:0001893!1.43e-14!29;UBERON:0000153!6.45e-11!94;UBERON:0007811!4.48e-10!86;UBERON:0000956!8.14e-10!21;UBERON:0001869!8.14e-10!21;UBERON:0000203!8.14e-10!21;UBERON:0002619!7.94e-08!17;UBERON:0000025!4.19e-07!114;UBERON:0002021!4.60e-07!10;UBERON:0000411!4.60e-07!10;UBERON:0001950!4.60e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010314,8.84e-22,92;UBERON:0002346,1.48e-21,64;UBERON:0003075,1.48e-21,64;UBERON:0007284,1.48e-21,64;UBERON:0000073,9.75e-21,54;UBERON:0001049,2.08e-19,52;UBERON:0005068,2.08e-19,52;UBERON:0006241,2.08e-19,52;UBERON:0007135,2.08e-19,52;UBERON:0003056,9.52e-19,49;UBERON:0010371,6.09e-18,73;UBERON:0001017,7.15e-18,73;UBERON:0002020,3.36e-17,34;UBERON:0001016,5.37e-17,75;UBERON:0000955,1.12e-16,47;UBERON:0006238,1.12e-16,47;UBERON:0004121,1.28e-16,95;UBERON:0000924,1.28e-16,95;UBERON:0006601,1.28e-16,95;UBERON:0003080,2.34e-16,40;UBERON:0002616,3.98e-16,46;UBERON:0002780,8.48e-16,39;UBERON:0001890,8.48e-16,39;UBERON:0006240,8.48e-16,39;UBERON:0003528,1.42e-14,29;UBERON:0002791,1.42e-14,29;UBERON:0001893,1.42e-14,29;UBERON:0000956,8.12e-10,21;UBERON:0001869,8.12e-10,21;UBERON:0000203,8.12e-10,21;UBERON:0002619,7.92e-08,17;UBERON:0000025,4.18e-07,114;UBERON:0002021,4.59e-07,10;UBERON:0000411,4.59e-07,10;UBERON:0001950,4.59e-07,10|phase1_expression=7.68714466103011,5.23463111459042,13.1949779422965,3.32710632437513,4.00716583957078,4.36486106970913,1.16806320297763,2.45334314538995,1.12630977721333,1.17032263160997,0.68487187290202,1.19658238493005,2.39681021903688,2.01066925563694,1.99865857089398,3.03712901084739,0.699561878128147,2.5236973228659,2.74228867211478,1.69755860719212,8.1641558545027,1.29078236561151,0,2.87986361028132,3.89995777814189,5.16808767703518,8.61523992318149,6.89507944594845,4.56056206695297,4.28451220591882,1.10865255327652,1.90509202037889,1.84519436275371,0,1.1554064790051,1.49611180822643,1.02084678131185,0.418531630736908,0.7813353445238,2.09409497589519,1.17646297606203,2.04913645487534,0.971020706062307,1.25896817975577,2.12891555560981,2.0190142737785,1.56478268869608,2.39827672018491,2.19686182734472,4.27745777963423,4.33957907038624,0,1.67782606057736,0.725362142011344,0,4.3734104126111,5.73066879877513,4.64104883049698,19.0177473208022,14.2827564403449,16.4796164911607,3.72728985276045,0.889294796111139,0,0.988866362566974,0,0.599200221036809,1.92109152660777,12.4427534770173,14.5806413398226,14.9330722559481,10.5690864229407,11.4851641294839,14.5764051065795,11.7889929352431,13.7882817991503,14.3150645299205,17.2377906415003,17.5111447912118,15.9582408153535,15.6443870560121,15.6274011167028,16.1926139420801,16.8828783009504,16.8078072554491,14.142172102736,13.5253096759148,19.0127434741807,3.10477392666055,3.47629176491213,1.15945795480671,1.72084775396277,3.39985666853875,3.77792234146472,3.24888208723835,4.48026887097336,7.02222100658759,2.21559419351475,4.67614808285164,3.5333957451034,4.92951969218382,3.84979432242953,2.54805239706646,0,0.865964164044856,1.52015919285059,0,5.36664234679582,2.58937883647172,4.00793775475027,4.16364784238726,4.26251669636998,4.61230994512117,4.6724018571313,4.46837087115678,3.14166478324189,5.19109432242185,2.02439099687876,1.76922110389975,8.57364304721269,6.40440403535141,9.69750506270444,0,9.07620470735796,7.95897485891129,3.83185582812887,1.55759661857696,2.39961092397363,2.41433431438823,14.5296920222678,12.8100168789215,15.0785222535437,13.5582969749976,14.0643501531682,14.7529511637288,14.2772311499627,9.3692214742291,5.59831367745419,3.79084137650512,4.62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| ||
|EntrezGene=20334 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q01405,Q8C1E4 | |||
|association_with_transcript=24bp_to_ENSMUST00000021375,ENSMUST00000134223,NM_009147,uc007npw.1_5end | |||
|description=CAGE_peak_3_at_Sec23a_5end | |||
|id=chr12:60112962..60112979,- | |||
|ontology_enrichment_celltype=CL:0000117!3.35e-14!23;CL:0000337!3.35e-14!23;CL:0000540!2.36e-10!33;CL:0000047!2.36e-10!33;CL:0000031!2.36e-10!33;CL:0000404!2.36e-10!33;CL:0000393!8.54e-08!39;CL:0000211!8.54e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.34e-14,23;CL:0000337,3.34e-14,23;CL:0000540,2.35e-10,33;CL:0000047,2.35e-10,33;CL:0000031,2.35e-10,33;CL:0000404,2.35e-10,33;CL:0000393,8.52e-08,39;CL:0000211,8.52e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!6.59e-21!63;UBERON:0002346!1.72e-19!71;UBERON:0003075!1.72e-19!71;UBERON:0007284!1.72e-19!71;UBERON:0001049!2.10e-19!52;UBERON:0005068!2.10e-19!52;UBERON:0006241!2.10e-19!52;UBERON:0007135!2.10e-19!52;UBERON:0003056!9.57e-19!49;UBERON:0000955!1.47e-18!50;UBERON:0006238!1.47e-18!50;UBERON:0002616!5.40e-18!49;UBERON:0001017!7.63e-18!73;UBERON:0005743!7.63e-18!73;UBERON:0002020!3.38e-17!34;UBERON:0000073!5.72e-17!75;UBERON:0001016!5.72e-17!75;UBERON:0003080!2.36e-16!40;UBERON:0002780!8.52e-16!39;UBERON:0001890!8.52e-16!39;UBERON:0006240!8.52e-16!39;UBERON:0004121!1.62e-15!102;UBERON:0000924!1.62e-15!102;UBERON:0006601!1.62e-15!102;UBERON:0002791!1.43e-14!29;UBERON:0003528!1.43e-14!29;UBERON:0001893!1.43e-14!29;UBERON:0000153!6.45e-11!94;UBERON:0007811!4.48e-10!86;UBERON:0000956!8.14e-10!21;UBERON:0001869!8.14e-10!21;UBERON:0000203!8.14e-10!21;UBERON:0002619!7.94e-08!17;UBERON:0000025!4.19e-07!114;UBERON:0002021!4.60e-07!10;UBERON:0000411!4.60e-07!10;UBERON:0001950!4.60e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,8.84e-22,92;UBERON:0002346,1.48e-21,64;UBERON:0003075,1.48e-21,64;UBERON:0007284,1.48e-21,64;UBERON:0000073,9.75e-21,54;UBERON:0001049,2.08e-19,52;UBERON:0005068,2.08e-19,52;UBERON:0006241,2.08e-19,52;UBERON:0007135,2.08e-19,52;UBERON:0003056,9.52e-19,49;UBERON:0010371,6.09e-18,73;UBERON:0001017,7.15e-18,73;UBERON:0002020,3.36e-17,34;UBERON:0001016,5.37e-17,75;UBERON:0000955,1.12e-16,47;UBERON:0006238,1.12e-16,47;UBERON:0004121,1.28e-16,95;UBERON:0000924,1.28e-16,95;UBERON:0006601,1.28e-16,95;UBERON:0003080,2.34e-16,40;UBERON:0002616,3.98e-16,46;UBERON:0002780,8.48e-16,39;UBERON:0001890,8.48e-16,39;UBERON:0006240,8.48e-16,39;UBERON:0003528,1.42e-14,29;UBERON:0002791,1.42e-14,29;UBERON:0001893,1.42e-14,29;UBERON:0000956,8.12e-10,21;UBERON:0001869,8.12e-10,21;UBERON:0000203,8.12e-10,21;UBERON:0002619,7.92e-08,17;UBERON:0000025,4.18e-07,114;UBERON:0002021,4.59e-07,10;UBERON:0000411,4.59e-07,10;UBERON:0001950,4.59e-07,10 | |||
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| |||
|short_description=p3@Sec23a | |||
}} |
Revision as of 23:00, 12 September 2013
Short description: | p3@Sec23a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sec23a_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 24bp_to_ENSMUST00000021375, ENSMUST00000134223, NM_009147, uc007npw.1_5end |
EntrezGene: | Sec23a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.34e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.34e-14 | 23 |
neuron | 2.35e-10 | 33 |
neuronal stem cell | 2.35e-10 | 33 |
neuroblast | 2.35e-10 | 33 |
electrically signaling cell | 2.35e-10 | 33 |
electrically responsive cell | 8.52e-08 | 39 |
electrically active cell | 8.52e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 8.84e-22 | 92 |
neurectoderm | 1.48e-21 | 64 |
neural plate | 1.48e-21 | 64 |
presumptive neural plate | 1.48e-21 | 64 |
regional part of nervous system | 9.75e-21 | 54 |
neural tube | 2.08e-19 | 52 |
neural rod | 2.08e-19 | 52 |
future spinal cord | 2.08e-19 | 52 |
neural keel | 2.08e-19 | 52 |
pre-chordal neural plate | 9.52e-19 | 49 |
ecto-epithelium | 6.09e-18 | 73 |
central nervous system | 7.15e-18 | 73 |
gray matter | 3.36e-17 | 34 |
nervous system | 5.37e-17 | 75 |
brain | 1.12e-16 | 47 |
future brain | 1.12e-16 | 47 |
ectoderm-derived structure | 1.28e-16 | 95 |
ectoderm | 1.28e-16 | 95 |
presumptive ectoderm | 1.28e-16 | 95 |
anterior neural tube | 2.34e-16 | 40 |
regional part of brain | 3.98e-16 | 46 |
regional part of forebrain | 8.48e-16 | 39 |
forebrain | 8.48e-16 | 39 |
future forebrain | 8.48e-16 | 39 |
brain grey matter | 1.42e-14 | 29 |
regional part of telencephalon | 1.42e-14 | 29 |
telencephalon | 1.42e-14 | 29 |
cerebral cortex | 8.12e-10 | 21 |
cerebral hemisphere | 8.12e-10 | 21 |
pallium | 8.12e-10 | 21 |
regional part of cerebral cortex | 7.92e-08 | 17 |
tube | 4.18e-07 | 114 |
occipital lobe | 4.59e-07 | 10 |
visual cortex | 4.59e-07 | 10 |
neocortex | 4.59e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.