FFCP PHASE1:Mm9::chr15:79921750..79921820,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20972|HGNC=|MCL_coexpression_id=1|UniProt=O55100,Q3U6D7|association_with_transcript=0bp_to_ENSMUST00000009727,ENSMUST00000009728,NM_009303,NM_207708,uc007wvc.1,uc007wvd.1_5end|description=CAGE_peak_1_at_Syngr1_5end|id=chr15:79921750..79921820,+|ontology_enrichment_celltype=CL:0000540!1.63e-12!33;CL:0000047!1.63e-12!33;CL:0000031!1.63e-12!33;CL:0000404!1.63e-12!33;CL:0000221!6.18e-12!44;CL:0000133!6.18e-12!44;CL:0002319!1.11e-11!43;CL:0000117!6.64e-11!23;CL:0000337!6.64e-11!23;CL:0000393!9.81e-09!39;CL:0000211!9.81e-09!39;CL:0000055!7.04e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.52e-12,33;CL:0000047,1.52e-12,33;CL:0000031,1.52e-12,33;CL:0000404,1.52e-12,33;CL:0000221,5.79e-12,44;CL:0000133,5.79e-12,44;CL:0002319,1.04e-11,43;CL:0000117,6.26e-11,23;CL:0000337,6.26e-11,23;CL:0000393,8.22e-09,39;CL:0000211,8.22e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!6.15e-25!102;UBERON:0000924!6.15e-25!102;UBERON:0006601!6.15e-25!102;UBERON:0000073!6.45e-25!75;UBERON:0001016!6.45e-25!75;UBERON:0001017!3.30e-24!73;UBERON:0005743!3.30e-24!73;UBERON:0000033!5.23e-18!63;UBERON:0001049!9.83e-18!52;UBERON:0005068!9.83e-18!52;UBERON:0006241!9.83e-18!52;UBERON:0007135!9.83e-18!52;UBERON:0002346!1.00e-17!71;UBERON:0003075!1.00e-17!71;UBERON:0007284!1.00e-17!71;UBERON:0000955!3.78e-17!50;UBERON:0006238!3.78e-17!50;UBERON:0002616!1.31e-16!49;UBERON:0002020!3.88e-15!34;UBERON:0003056!1.68e-13!49;UBERON:0003080!6.59e-13!40;UBERON:0002791!1.16e-12!29;UBERON:0003528!1.16e-12!29;UBERON:0001893!1.16e-12!29;UBERON:0002780!2.23e-12!39;UBERON:0001890!2.23e-12!39;UBERON:0006240!2.23e-12!39;UBERON:0007811!2.32e-12!86;UBERON:0000153!8.34e-09!94;UBERON:0000956!1.28e-08!21;UBERON:0001869!1.28e-08!21;UBERON:0000203!1.28e-08!21;UBERON:0002021!8.18e-08!10;UBERON:0000411!8.18e-08!10;UBERON:0001950!8.18e-08!10;UBERON:0002619!1.55e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.16e-26,95;UBERON:0000924,4.16e-26,95;UBERON:0006601,4.16e-26,95;UBERON:0001016,5.56e-25,75;UBERON:0001017,2.86e-24,73;UBERON:0010314,2.16e-19,92;UBERON:0000073,2.99e-19,54;UBERON:0002346,3.99e-19,64;UBERON:0003075,3.99e-19,64;UBERON:0007284,3.99e-19,64;UBERON:0010371,1.99e-18,73;UBERON:0001049,8.86e-18,52;UBERON:0005068,8.86e-18,52;UBERON:0006241,8.86e-18,52;UBERON:0007135,8.86e-18,52;UBERON:0000955,2.97e-15,47;UBERON:0006238,2.97e-15,47;UBERON:0002020,3.56e-15,34;UBERON:0002616,9.94e-15,46;UBERON:0003056,1.55e-13,49;UBERON:0003080,6.13e-13,40;UBERON:0003528,1.08e-12,29;UBERON:0002791,1.08e-12,29;UBERON:0001893,1.08e-12,29;UBERON:0002780,2.08e-12,39;UBERON:0001890,2.08e-12,39;UBERON:0006240,2.08e-12,39;UBERON:0000956,1.22e-08,21;UBERON:0001869,1.22e-08,21;UBERON:0000203,1.22e-08,21;UBERON:0002021,7.86e-08,10;UBERON:0000411,7.86e-08,10;UBERON:0001950,7.86e-08,10;UBERON:0002619,1.49e-07,17|phase1_expression=4.64431656603902,0,0,0,0,1.84667199103079,2.56973904655078,0.258246646883153,0.281577444303333,0.234064526321993,1.19852577757853,1.7549874978974,0,0,14.6568295198892,11.3386149738303,19.5877325875881,0,0.137114433605739,1.27316895539409,30.7856710346873,0.0992909512008853,0,0.799962113967033,0.68822784320151,1.72269589234506,0.430761996159075,0.646413698057667,0.380046838912748,0,1.77384408524244,20.9560122241678,25.2176562909674,47.5445043046316,3.46621943701529,5.81821258754723,5.10423390655923,3.34825304589526,7.0320181007142,2.09409497589519,1.17646297606203,1.36609096991689,2.42755176515577,2.51793635951155,2.33166941804883,2.0190142737785,5.47673941043627,5.88667922227206,3.29529274101708,2.72201858703997,1.67983705950435,7.18762821824858,0,0.725362142011344,0,0,4.01146815914259,3.09403255366465,28.1219880594841,25.9205579843296,25.9870875437533,1.69422266034566,0,161.08204939337,187.884608887725,188.277230460717,76.3980281821932,58.0169641035547,15.9682002955056,12.5555522648472,10.7265730289205,93.6935228844476,76.4205151692583,12.3715707207104,12.6516021744072,21.1420320920305,173.983091979034,189.232635042248,174.804234845605,24.1351906546255,32.4781134788554,26.045668527838,191.519537314947,225.667806622704,183.357897332172,66.8806889025226,65.4909731675874,33.3655008027288,17.1898458866328,14.6608826607164,4.92769630792852,0,0,2.15881276655127,0,0,13.6231087527799,0,0,0,14.2251853974447,0,0,0,21.8655951421326,22.8023878927589,19.2099289105618,6.50848114398642,1.55362730188303,15.1410981846121,4.8575891494518,2.13125834818499,4.38169444786511,4.6724018571313,6.34979018532806,6.6603293404728,7.41584903203122,6.2177723475562,4.42305275974937,3.72063754879041,6.18356251689102,6.78825354389311,5.59175283654366,100.131032577949,148.707161837553,1.27728527604296,0.479260498023681,1.19980546198682,0.381210681219194,96.1655904978962,77.3176018763479,35.183218591602,140.450050715359,151.639266196886,108.880935349209,113.893366673566,4.58277137326423,3.98102305952298,0.758168275301024,91.1213235988432,5.46505860443356,4.36813998423599,5.22180176435513,6.93242162044289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| ||
|EntrezGene=20972 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=O55100,Q3U6D7 | |||
|association_with_transcript=0bp_to_ENSMUST00000009727,ENSMUST00000009728,NM_009303,NM_207708,uc007wvc.1,uc007wvd.1_5end | |||
|description=CAGE_peak_1_at_Syngr1_5end | |||
|id=chr15:79921750..79921820,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.63e-12!33;CL:0000047!1.63e-12!33;CL:0000031!1.63e-12!33;CL:0000404!1.63e-12!33;CL:0000221!6.18e-12!44;CL:0000133!6.18e-12!44;CL:0002319!1.11e-11!43;CL:0000117!6.64e-11!23;CL:0000337!6.64e-11!23;CL:0000393!9.81e-09!39;CL:0000211!9.81e-09!39;CL:0000055!7.04e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.52e-12,33;CL:0000047,1.52e-12,33;CL:0000031,1.52e-12,33;CL:0000404,1.52e-12,33;CL:0000221,5.79e-12,44;CL:0000133,5.79e-12,44;CL:0002319,1.04e-11,43;CL:0000117,6.26e-11,23;CL:0000337,6.26e-11,23;CL:0000393,8.22e-09,39;CL:0000211,8.22e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!6.15e-25!102;UBERON:0000924!6.15e-25!102;UBERON:0006601!6.15e-25!102;UBERON:0000073!6.45e-25!75;UBERON:0001016!6.45e-25!75;UBERON:0001017!3.30e-24!73;UBERON:0005743!3.30e-24!73;UBERON:0000033!5.23e-18!63;UBERON:0001049!9.83e-18!52;UBERON:0005068!9.83e-18!52;UBERON:0006241!9.83e-18!52;UBERON:0007135!9.83e-18!52;UBERON:0002346!1.00e-17!71;UBERON:0003075!1.00e-17!71;UBERON:0007284!1.00e-17!71;UBERON:0000955!3.78e-17!50;UBERON:0006238!3.78e-17!50;UBERON:0002616!1.31e-16!49;UBERON:0002020!3.88e-15!34;UBERON:0003056!1.68e-13!49;UBERON:0003080!6.59e-13!40;UBERON:0002791!1.16e-12!29;UBERON:0003528!1.16e-12!29;UBERON:0001893!1.16e-12!29;UBERON:0002780!2.23e-12!39;UBERON:0001890!2.23e-12!39;UBERON:0006240!2.23e-12!39;UBERON:0007811!2.32e-12!86;UBERON:0000153!8.34e-09!94;UBERON:0000956!1.28e-08!21;UBERON:0001869!1.28e-08!21;UBERON:0000203!1.28e-08!21;UBERON:0002021!8.18e-08!10;UBERON:0000411!8.18e-08!10;UBERON:0001950!8.18e-08!10;UBERON:0002619!1.55e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.16e-26,95;UBERON:0000924,4.16e-26,95;UBERON:0006601,4.16e-26,95;UBERON:0001016,5.56e-25,75;UBERON:0001017,2.86e-24,73;UBERON:0010314,2.16e-19,92;UBERON:0000073,2.99e-19,54;UBERON:0002346,3.99e-19,64;UBERON:0003075,3.99e-19,64;UBERON:0007284,3.99e-19,64;UBERON:0010371,1.99e-18,73;UBERON:0001049,8.86e-18,52;UBERON:0005068,8.86e-18,52;UBERON:0006241,8.86e-18,52;UBERON:0007135,8.86e-18,52;UBERON:0000955,2.97e-15,47;UBERON:0006238,2.97e-15,47;UBERON:0002020,3.56e-15,34;UBERON:0002616,9.94e-15,46;UBERON:0003056,1.55e-13,49;UBERON:0003080,6.13e-13,40;UBERON:0003528,1.08e-12,29;UBERON:0002791,1.08e-12,29;UBERON:0001893,1.08e-12,29;UBERON:0002780,2.08e-12,39;UBERON:0001890,2.08e-12,39;UBERON:0006240,2.08e-12,39;UBERON:0000956,1.22e-08,21;UBERON:0001869,1.22e-08,21;UBERON:0000203,1.22e-08,21;UBERON:0002021,7.86e-08,10;UBERON:0000411,7.86e-08,10;UBERON:0001950,7.86e-08,10;UBERON:0002619,1.49e-07,17 | |||
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| |||
|short_description=p1@Syngr1 | |||
}} |
Revision as of 11:13, 13 September 2013
Short description: | p1@Syngr1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Syngr1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000009727, ENSMUST00000009728, NM_009303, NM_207708, uc007wvc.1, uc007wvd.1_5end |
EntrezGene: | Syngr1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.52e-12 | 33 |
neuronal stem cell | 1.52e-12 | 33 |
neuroblast | 1.52e-12 | 33 |
electrically signaling cell | 1.52e-12 | 33 |
ectodermal cell | 5.79e-12 | 44 |
neurectodermal cell | 5.79e-12 | 44 |
neural cell | 1.04e-11 | 43 |
CNS neuron (sensu Vertebrata) | 6.26e-11 | 23 |
neuroblast (sensu Vertebrata) | 6.26e-11 | 23 |
electrically responsive cell | 8.22e-09 | 39 |
electrically active cell | 8.22e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 4.16e-26 | 95 |
ectoderm | 4.16e-26 | 95 |
presumptive ectoderm | 4.16e-26 | 95 |
nervous system | 5.56e-25 | 75 |
central nervous system | 2.86e-24 | 73 |
structure with developmental contribution from neural crest | 2.16e-19 | 92 |
regional part of nervous system | 2.99e-19 | 54 |
neurectoderm | 3.99e-19 | 64 |
neural plate | 3.99e-19 | 64 |
presumptive neural plate | 3.99e-19 | 64 |
ecto-epithelium | 1.99e-18 | 73 |
neural tube | 8.86e-18 | 52 |
neural rod | 8.86e-18 | 52 |
future spinal cord | 8.86e-18 | 52 |
neural keel | 8.86e-18 | 52 |
brain | 2.97e-15 | 47 |
future brain | 2.97e-15 | 47 |
gray matter | 3.56e-15 | 34 |
regional part of brain | 9.94e-15 | 46 |
pre-chordal neural plate | 1.55e-13 | 49 |
anterior neural tube | 6.13e-13 | 40 |
brain grey matter | 1.08e-12 | 29 |
regional part of telencephalon | 1.08e-12 | 29 |
telencephalon | 1.08e-12 | 29 |
regional part of forebrain | 2.08e-12 | 39 |
forebrain | 2.08e-12 | 39 |
future forebrain | 2.08e-12 | 39 |
cerebral cortex | 1.22e-08 | 21 |
cerebral hemisphere | 1.22e-08 | 21 |
pallium | 1.22e-08 | 21 |
occipital lobe | 7.86e-08 | 10 |
visual cortex | 7.86e-08 | 10 |
neocortex | 7.86e-08 | 10 |
regional part of cerebral cortex | 1.49e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.