FFCP PHASE1:Mm9::chr3:107320919..107320941,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=229706|HGNC=|MCL_coexpression_id=1|UniProt=Q8BJI1,Q05BS7|association_with_transcript=0bp_to_ENSMUST00000029499,ENSMUST00000167898,ENSMUST00000169449,NM_172271,uc008qxb.1,uc008qxc.1,uc008qxd.1_5end|description=CAGE_peak_2_at_Slc6a17_5end|id=chr3:107320919..107320941,-|ontology_enrichment_celltype=CL:0000117!3.09e-14!23;CL:0000337!3.09e-14!23;CL:0000540!1.18e-09!33;CL:0000047!1.18e-09!33;CL:0000031!1.18e-09!33;CL:0000404!1.18e-09!33;CL:0000221!6.43e-09!44;CL:0000133!6.43e-09!44;CL:0002319!1.56e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,1.24e-25,23;CL:0000337,1.24e-25,23;CL:0000540,3.41e-17,33;CL:0000047,3.41e-17,33;CL:0000031,3.41e-17,33;CL:0000404,3.41e-17,33;CL:0000393,1.94e-13,39;CL:0000211,1.94e-13,39;CL:0000221,3.31e-12,44;CL:0000133,3.31e-12,44;CL:0002319,1.54e-11,43;CL:0002609,6.55e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.42e-29!63;UBERON:0001049!5.79e-28!52;UBERON:0005068!5.79e-28!52;UBERON:0006241!5.79e-28!52;UBERON:0007135!5.79e-28!52;UBERON:0002346!1.67e-27!71;UBERON:0003075!1.67e-27!71;UBERON:0007284!1.67e-27!71;UBERON:0000073!2.52e-27!75;UBERON:0001016!2.52e-27!75;UBERON:0000955!4.33e-27!50;UBERON:0006238!4.33e-27!50;UBERON:0001017!9.64e-27!73;UBERON:0005743!9.64e-27!73;UBERON:0002616!2.39e-26!49;UBERON:0004121!1.59e-25!102;UBERON:0000924!1.59e-25!102;UBERON:0006601!1.59e-25!102;UBERON:0003056!1.63e-25!49;UBERON:0003080!1.28e-23!40;UBERON:0002780!6.00e-23!39;UBERON:0001890!6.00e-23!39;UBERON:0006240!6.00e-23!39;UBERON:0002020!1.45e-21!34;UBERON:0002791!1.48e-18!29;UBERON:0003528!1.48e-18!29;UBERON:0001893!1.48e-18!29;UBERON:0007811!4.81e-15!86;UBERON:0000153!8.43e-15!94;UBERON:0000956!1.19e-13!21;UBERON:0001869!1.19e-13!21;UBERON:0000203!1.19e-13!21;UBERON:0002619!1.92e-11!17;UBERON:0002021!8.40e-09!10;UBERON:0000411!8.40e-09!10;UBERON:0001950!8.40e-09!10;UBERON:0004111!8.36e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.96e-52,54;UBERON:0001049,9.51e-49,52;UBERON:0005068,9.51e-49,52;UBERON:0006241,9.51e-49,52;UBERON:0007135,9.51e-49,52;UBERON:0001017,8.32e-46,73;UBERON:0001016,3.69e-44,75;UBERON:0000955,7.68e-43,47;UBERON:0006238,7.68e-43,47;UBERON:0002346,3.70e-42,64;UBERON:0003075,3.70e-42,64;UBERON:0007284,3.70e-42,64;UBERON:0002616,1.79e-41,46;UBERON:0003080,1.06e-38,40;UBERON:0010371,2.06e-38,73;UBERON:0002780,1.92e-37,39;UBERON:0001890,1.92e-37,39;UBERON:0006240,1.92e-37,39;UBERON:0004121,3.74e-37,95;UBERON:0000924,3.74e-37,95;UBERON:0006601,3.74e-37,95;UBERON:0002020,2.72e-36,34;UBERON:0003056,1.12e-34,49;UBERON:0003528,1.36e-30,29;UBERON:0002791,1.36e-30,29;UBERON:0001893,1.36e-30,29;UBERON:0010314,6.94e-30,92;UBERON:0000956,2.49e-21,21;UBERON:0001869,2.49e-21,21;UBERON:0000203,2.49e-21,21;UBERON:0002619,3.70e-17,17;UBERON:0000025,2.59e-16,114;UBERON:0004111,4.64e-16,122;UBERON:0002021,2.65e-15,10;UBERON:0000411,2.65e-15,10;UBERON:0001950,2.65e-15,10;UBERON:0002420,3.17e-10,8;UBERON:0007245,3.17e-10,8;UBERON:0010009,3.17e-10,8;UBERON:0010011,3.17e-10,8;UBERON:0000454,3.17e-10,8;UBERON:0003076,8.59e-10,12;UBERON:0003057,8.59e-10,12;UBERON:0000483,8.73e-09,174;UBERON:0000119,1.59e-08,176;UBERON:0011216,3.48e-08,194;UBERON:0001894,1.10e-07,10;UBERON:0006222,1.10e-07,10;UBERON:0002240,1.14e-07,6;UBERON:0005174,1.14e-07,6;UBERON:0001137,1.14e-07,6|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.14660173558958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0.659058548203415,0.58328969722285,0,0,0,0,0,0,0,0,3.23706337375356,4.7609188134483,5.07065122804943,0,0,0,0,0.7104801149461,0.599200221036809,0.768436610643109,4.66603255388149,4.86021377994086,2.52389953621658,7.42692559449889,7.95126747425809,3.1847607795888,2.77951865952885,4.5960939330501,7.70811166995721,17.4931653176707,16.1286859919056,5.53922408466814,4.11694396210843,4.68822033501084,14.2383329490704,12.380777420697,17.1134037510027,5.30331453852602,5.69486723196412,4.47358669980721,0.757261933331841,0.604572480854284,0,0,0,0,0,0,0.421333260395256,0,0,0,1.40843419776681,0,0,0,0,0,0,0.68510327831436,0,0,0.173485326766136,0.304465478312141,0.691846491768175,0.452167921657868,0.117588707135705,0.125666591329675,0,0,0,0.161766849947409,0,0,0,12.296793474485,9.21565509979202,0.255457055208591,0,0,0,8.38827580667007,4.57500602818627,9.04711335212624,16.339486098074,24.8043993610421,10.1816141834184,11.1946471516753,0.712875546952214,0,0.252722758433675,0.210441855886474,0.650602214813519,0.459804208866946,0.540186389416048,0.753524089178575,1.36072998302656,0.896796041993948,1.3118241438362,1.29351685369508,0,0.378212160335639,0.703804496655795,0.219195732427575,0.278047249225598,0.348252166522167,0.61734640922383,0.199034266818493,0,0,0,0.207125772535502,0.469052119962192,0.180062061461015,1.42046841351126,0.787056926989615,0.308534225774757,0.465067889500816,1.07309360559848,0.350296027101508,0.658239399653922,0,0,0,0,0,9.46304768538573,6.38008596751563,0,0,0.21328825053523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| ||
|EntrezGene=229706 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8BJI1,Q05BS7 | |||
|association_with_transcript=0bp_to_ENSMUST00000029499,ENSMUST00000167898,ENSMUST00000169449,NM_172271,uc008qxb.1,uc008qxc.1,uc008qxd.1_5end | |||
|description=CAGE_peak_2_at_Slc6a17_5end | |||
|id=chr3:107320919..107320941,- | |||
|ontology_enrichment_celltype=CL:0000117!3.09e-14!23;CL:0000337!3.09e-14!23;CL:0000540!1.18e-09!33;CL:0000047!1.18e-09!33;CL:0000031!1.18e-09!33;CL:0000404!1.18e-09!33;CL:0000221!6.43e-09!44;CL:0000133!6.43e-09!44;CL:0002319!1.56e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.24e-25,23;CL:0000337,1.24e-25,23;CL:0000540,3.41e-17,33;CL:0000047,3.41e-17,33;CL:0000031,3.41e-17,33;CL:0000404,3.41e-17,33;CL:0000393,1.94e-13,39;CL:0000211,1.94e-13,39;CL:0000221,3.31e-12,44;CL:0000133,3.31e-12,44;CL:0002319,1.54e-11,43;CL:0002609,6.55e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.42e-29!63;UBERON:0001049!5.79e-28!52;UBERON:0005068!5.79e-28!52;UBERON:0006241!5.79e-28!52;UBERON:0007135!5.79e-28!52;UBERON:0002346!1.67e-27!71;UBERON:0003075!1.67e-27!71;UBERON:0007284!1.67e-27!71;UBERON:0000073!2.52e-27!75;UBERON:0001016!2.52e-27!75;UBERON:0000955!4.33e-27!50;UBERON:0006238!4.33e-27!50;UBERON:0001017!9.64e-27!73;UBERON:0005743!9.64e-27!73;UBERON:0002616!2.39e-26!49;UBERON:0004121!1.59e-25!102;UBERON:0000924!1.59e-25!102;UBERON:0006601!1.59e-25!102;UBERON:0003056!1.63e-25!49;UBERON:0003080!1.28e-23!40;UBERON:0002780!6.00e-23!39;UBERON:0001890!6.00e-23!39;UBERON:0006240!6.00e-23!39;UBERON:0002020!1.45e-21!34;UBERON:0002791!1.48e-18!29;UBERON:0003528!1.48e-18!29;UBERON:0001893!1.48e-18!29;UBERON:0007811!4.81e-15!86;UBERON:0000153!8.43e-15!94;UBERON:0000956!1.19e-13!21;UBERON:0001869!1.19e-13!21;UBERON:0000203!1.19e-13!21;UBERON:0002619!1.92e-11!17;UBERON:0002021!8.40e-09!10;UBERON:0000411!8.40e-09!10;UBERON:0001950!8.40e-09!10;UBERON:0004111!8.36e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.96e-52,54;UBERON:0001049,9.51e-49,52;UBERON:0005068,9.51e-49,52;UBERON:0006241,9.51e-49,52;UBERON:0007135,9.51e-49,52;UBERON:0001017,8.32e-46,73;UBERON:0001016,3.69e-44,75;UBERON:0000955,7.68e-43,47;UBERON:0006238,7.68e-43,47;UBERON:0002346,3.70e-42,64;UBERON:0003075,3.70e-42,64;UBERON:0007284,3.70e-42,64;UBERON:0002616,1.79e-41,46;UBERON:0003080,1.06e-38,40;UBERON:0010371,2.06e-38,73;UBERON:0002780,1.92e-37,39;UBERON:0001890,1.92e-37,39;UBERON:0006240,1.92e-37,39;UBERON:0004121,3.74e-37,95;UBERON:0000924,3.74e-37,95;UBERON:0006601,3.74e-37,95;UBERON:0002020,2.72e-36,34;UBERON:0003056,1.12e-34,49;UBERON:0003528,1.36e-30,29;UBERON:0002791,1.36e-30,29;UBERON:0001893,1.36e-30,29;UBERON:0010314,6.94e-30,92;UBERON:0000956,2.49e-21,21;UBERON:0001869,2.49e-21,21;UBERON:0000203,2.49e-21,21;UBERON:0002619,3.70e-17,17;UBERON:0000025,2.59e-16,114;UBERON:0004111,4.64e-16,122;UBERON:0002021,2.65e-15,10;UBERON:0000411,2.65e-15,10;UBERON:0001950,2.65e-15,10;UBERON:0002420,3.17e-10,8;UBERON:0007245,3.17e-10,8;UBERON:0010009,3.17e-10,8;UBERON:0010011,3.17e-10,8;UBERON:0000454,3.17e-10,8;UBERON:0003076,8.59e-10,12;UBERON:0003057,8.59e-10,12;UBERON:0000483,8.73e-09,174;UBERON:0000119,1.59e-08,176;UBERON:0011216,3.48e-08,194;UBERON:0001894,1.10e-07,10;UBERON:0006222,1.10e-07,10;UBERON:0002240,1.14e-07,6;UBERON:0005174,1.14e-07,6;UBERON:0001137,1.14e-07,6 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.14660173558958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0.659058548203415,0.58328969722285,0,0,0,0,0,0,0,0,3.23706337375356,4.7609188134483,5.07065122804943,0,0,0,0,0.7104801149461,0.599200221036809,0.768436610643109,4.66603255388149,4.86021377994086,2.52389953621658,7.42692559449889,7.95126747425809,3.1847607795888,2.77951865952885,4.5960939330501,7.70811166995721,17.4931653176707,16.1286859919056,5.53922408466814,4.11694396210843,4.68822033501084,14.2383329490704,12.380777420697,17.1134037510027,5.30331453852602,5.69486723196412,4.47358669980721,0.757261933331841,0.604572480854284,0,0,0,0,0,0,0.421333260395256,0,0,0,1.40843419776681,0,0,0,0,0,0,0.68510327831436,0,0,0.173485326766136,0.304465478312141,0.691846491768175,0.452167921657868,0.117588707135705,0.125666591329675,0,0,0,0.161766849947409,0,0,0,12.296793474485,9.21565509979202,0.255457055208591,0,0,0,8.38827580667007,4.57500602818627,9.04711335212624,16.339486098074,24.8043993610421,10.1816141834184,11.1946471516753,0.712875546952214,0,0.252722758433675,0.210441855886474,0.650602214813519,0.459804208866946,0.540186389416048,0.753524089178575,1.36072998302656,0.896796041993948,1.3118241438362,1.29351685369508,0,0.378212160335639,0.703804496655795,0.219195732427575,0.278047249225598,0.348252166522167,0.61734640922383,0.199034266818493,0,0,0,0.207125772535502,0.469052119962192,0.180062061461015,1.42046841351126,0.787056926989615,0.308534225774757,0.465067889500816,1.07309360559848,0.350296027101508,0.658239399653922,0,0,0,0,0,9.46304768538573,6.38008596751563,0,0,0.213288250535234,0,0,0,0.22237804384487,0.190225626112559,0,0.329397909448022,0.251335208800269,0.795825888164603,0.19496408711912,0.898819408654221,0,0.398282546508734,0,0.342745537829186,0,0.203651327845314,0,0.210407459670956,0.126473074248515,0.442830443938806,0.31399745568275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.568474235311454,0.162964976442026,0,0.234690248288502,0,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,7.06422595946285,10.4318401067061,0,0.504941854408746,0.315508219416257,0.390438744296638,0,0.238968797952552,0.222798674082394,0,0,0,0,11.2462460747632,0.283880170416537,0.712262414669021,0.325773918707152,0.329940245945071,0,0.242780636154981,0,0,0,0.307435147943927,0.516856586336442,0.363533729477506,0,0.316036757935816,0,1.03135543248187,1.36175842301515,1.08036656418786,1.03486947026204,0.643011105094777,1.06404140185364,1.24858172321449,1.81003922662333,3.34911444026059,0,0,0.220528398054962,0,0.645857706783622,0.301564624640779,0.238744688006273,0,0,5.00648315428376,0,0,0,0,0,0.228778173206523,0,0,0.138199973804424,0,0.316335993581135,0.203319467126849,0.108005340821801,0.209088296014469,0.436725127492355,0.539457385539283,0.826534557253359,0.523511883968059,0.259229946583586,0,0,0.299033092087958,0,0.194451188344048,0.258319646955462,0.168956125490778,0.117357238645754,0,0.104859344425711,0,0,0,0.405450430580328,0.205421914329655,0,0.358053391334963,0,0,0,0,0,0,0,0.0962118416403295,0,0.226730383615211,0.443971906748129,0.0897138566094757,0,0.579568782096571,0.375364950902364,0,0.214368379079066,0,24.8490810751509,17.4923589872727,14.8952833494243,26.4653900809279,19.8673930733486,21.9064230243013,22.9507650078814,16.6618845192962,19.4851235863208,21.7459330935764,0,0,0.341467211508268,0,0.209613162627982,0.551530525350042,0.222246727801615,0.412070114477788,0.320919209591815,0,0.25347929989024,1.13175804831646,0.936415074698824,0.89635213366817,1.20614484806788,0.952587382566147,0.811190281613988,0.578727661391115,1.23625770240992,1.17759136107518,0.342869252385415,0.70990322463735,1.90748951957857,0.872078499793971,1.03520318456864,0.592302255241736,0.365855945745545,1.31534855718921,0.950628796921032,1.12228454331548,0.711810108745045,0.985044823755635,0.818462086339379,0.619747364743864,0.578719832943424,2.49810577937946,1.16965804222704,0.644613162144895,0.382576664137687,0.220591419119515,0.231867835620421 | |||
|short_description=p2@Slc6a17 | |||
}} |
Revision as of 01:11, 14 September 2013
Short description: | p2@Slc6a17 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Slc6a17_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000029499, ENSMUST00000167898, ENSMUST00000169449, NM_172271, uc008qxb.1, uc008qxc.1, uc008qxd.1_5end |
EntrezGene: | Slc6a17 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.24e-25 | 23 |
neuroblast (sensu Vertebrata) | 1.24e-25 | 23 |
neuron | 3.41e-17 | 33 |
neuronal stem cell | 3.41e-17 | 33 |
neuroblast | 3.41e-17 | 33 |
electrically signaling cell | 3.41e-17 | 33 |
electrically responsive cell | 1.94e-13 | 39 |
electrically active cell | 1.94e-13 | 39 |
ectodermal cell | 3.31e-12 | 44 |
neurectodermal cell | 3.31e-12 | 44 |
neural cell | 1.54e-11 | 43 |
neuron of cerebral cortex | 6.55e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.