FFCP PHASE1:Mm9::chr2:33742955..33743035,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72543|HGNC=|MCL_coexpression_id=2345|UniProt=|association_with_transcript=0bp_to_ENSMUST00000146892_5end|description=CAGE_peak_1_at_Fam125b_5end|id=chr2:33742955..33743035,-|ontology_enrichment_celltype=CL:0000221!9.82e-22!44;CL:0000133!9.82e-22!44;CL:0002319!1.86e-21!43;CL:0000540!2.71e-19!33;CL:0000047!2.71e-19!33;CL:0000031!2.71e-19!33;CL:0000404!2.71e-19!33;CL:0000055!2.44e-16!50;CL:0000393!8.81e-15!39;CL:0000211!8.81e-15!39;CL:0000117!1.31e-14!23;CL:0000337!1.31e-14!23|ontology_enrichment_celltype_v019_2=CL:0000221,9.81e-22,44;CL:0000133,9.81e-22,44;CL:0002319,1.85e-21,43;CL:0000540,2.70e-19,33;CL:0000047,2.70e-19,33;CL:0000031,2.70e-19,33;CL:0000404,2.70e-19,33;CL:0000393,8.81e-15,39;CL:0000211,8.81e-15,39;CL:0000117,1.31e-14,23;CL:0000337,1.31e-14,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.03e-34!75;UBERON:0001016!3.03e-34!75;UBERON:0001017!8.68e-34!73;UBERON:0005743!8.68e-34!73;UBERON:0004121!6.32e-26!102;UBERON:0000924!6.32e-26!102;UBERON:0006601!6.32e-26!102;UBERON:0001049!2.40e-22!52;UBERON:0005068!2.40e-22!52;UBERON:0006241!2.40e-22!52;UBERON:0007135!2.40e-22!52;UBERON:0000033!2.61e-21!63;UBERON:0002346!7.92e-21!71;UBERON:0003075!7.92e-21!71;UBERON:0007284!7.92e-21!71;UBERON:0000955!1.00e-20!50;UBERON:0006238!1.00e-20!50;UBERON:0002616!3.24e-20!49;UBERON:0007811!5.15e-19!86;UBERON:0002020!4.51e-18!34;UBERON:0000153!1.43e-17!94;UBERON:0003056!1.64e-16!49;UBERON:0003080!3.01e-16!40;UBERON:0002780!9.86e-16!39;UBERON:0001890!9.86e-16!39;UBERON:0006240!9.86e-16!39;UBERON:0002791!4.77e-15!29;UBERON:0003528!4.77e-15!29;UBERON:0001893!4.77e-15!29;UBERON:0000956!5.74e-11!21;UBERON:0001869!5.74e-11!21;UBERON:0000203!5.74e-11!21;UBERON:0002619!1.39e-08!17;UBERON:0000475!5.67e-08!200;UBERON:0000025!5.84e-07!114;UBERON:0003076!8.47e-07!12;UBERON:0003057!8.47e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.03e-34,75;UBERON:0001017,8.66e-34,73;UBERON:0004121,1.39e-28,95;UBERON:0000924,1.39e-28,95;UBERON:0006601,1.39e-28,95;UBERON:0002346,4.97e-24,64;UBERON:0003075,4.97e-24,64;UBERON:0007284,4.97e-24,64;UBERON:0000073,2.15e-23,54;UBERON:0001049,2.39e-22,52;UBERON:0005068,2.39e-22,52;UBERON:0006241,2.39e-22,52;UBERON:0007135,2.39e-22,52;UBERON:0010371,1.41e-19,73;UBERON:0000955,4.48e-19,47;UBERON:0006238,4.48e-19,47;UBERON:0002616,1.42e-18,46;UBERON:0002020,4.50e-18,34;UBERON:0003056,1.63e-16,49;UBERON:0003080,3.01e-16,40;UBERON:0002780,9.85e-16,39;UBERON:0001890,9.85e-16,39;UBERON:0006240,9.85e-16,39;UBERON:0003528,4.77e-15,29;UBERON:0002791,4.77e-15,29;UBERON:0001893,4.77e-15,29;UBERON:0010314,2.78e-14,92;UBERON:0000956,5.74e-11,21;UBERON:0001869,5.74e-11,21;UBERON:0000203,5.74e-11,21;UBERON:0002619,1.39e-08,17;UBERON:0000025,5.87e-07,114;UBERON:0003076,8.47e-07,12;UBERON:0003057,8.47e-07,12|phase1_expression=24.6629224541383,0.348975407639361,0,0,0,1.6787927191189,1.86890112476421,5.93967287831251,3.23814060948833,2.57470978954193,2.91070545983358,4.86610169871552,7.36163138704185,5.42006494997784,25.3163418979904,18.4252493324742,25.8837894907414,1.57731082679119,2.4680598049033,5.09267582157636,16.7535281597607,14.2978969729275,8.35839325244593,0.95995453676044,1.60586496747019,0,0.430761996159075,0.646413698057667,0.950117097281869,1.51218077855958,1.99557459589774,10.7955214488137,20.2971379902908,0,2.59966457776147,2.1610503896604,1.42918549383658,42.2716947044277,25.7840663692854,20.9409497589519,55.2937598749153,59.4249571913848,54.8626698925204,11.7084040717287,9.42805460341485,13.7660064121261,22.6893489860931,37.5003268974368,28.1198313900124,27.9979054666968,15.9584520652913,37.3756667348926,0,7.97898356212479,7.05796978199174,12.6057123657614,13.1805382371828,12.8918023069361,80.5219514221199,55.5440528235635,73.5244428067168,16.9422266034566,17.7858959222228,47.6946850159141,43.5101199529469,47.6021677013887,56.3248207774601,56.095872576947,81.6037248867719,75.7383314040785,72.7724366275782,67.9849342881053,61.6223229255002,79.3740378912902,84.8232418511392,129.609848912013,51.7544640697127,53.5009946576937,50.6901559745603,81.3738395295296,74.7454048231687,65.114171319595,49.9737568212472,30.3891809417107,45.9922725808198,54.2116597271549,51.5385484492753,74.5597783301202,20.4460721999597,38.6170672145674,17.6817338108023,5.16254326188832,0,1.07940638327563,0.649776417447669,2.24013443548668,12.2186645514624,18.4064748384302,9.61208217030615,12.3668851078619,30.422178671763,15.3991772897181,25.4805239706646,28.4426681261332,9.74209684550464,11.6545538118545,13.6491600153991,8.33542321949138,10.8753911131812,19.8912466346865,16.1341353892506,10.0473607843007,10.1470818792666,9.3448037142626,14.9337658062345,15.5826573248798,3.46072954828123,19.9547112549478,26.5383165584962,20.7061567932684,20.9799442537374,18.9101348722737,3.72783522436244,38.0615036115011,46.497168912587,5.8755122697976,10.9031763300387,7.19883277192089,6.98886248901856,51.6777705946638,35.2275464170342,103.162223084662,49.887579895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| ||
|EntrezGene=72543 | |||
|HGNC= | |||
|MCL_coexpression_id=2345 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000146892_5end | |||
|description=CAGE_peak_1_at_Fam125b_5end | |||
|id=chr2:33742955..33743035,- | |||
|ontology_enrichment_celltype=CL:0000221!9.82e-22!44;CL:0000133!9.82e-22!44;CL:0002319!1.86e-21!43;CL:0000540!2.71e-19!33;CL:0000047!2.71e-19!33;CL:0000031!2.71e-19!33;CL:0000404!2.71e-19!33;CL:0000055!2.44e-16!50;CL:0000393!8.81e-15!39;CL:0000211!8.81e-15!39;CL:0000117!1.31e-14!23;CL:0000337!1.31e-14!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,9.81e-22,44;CL:0000133,9.81e-22,44;CL:0002319,1.85e-21,43;CL:0000540,2.70e-19,33;CL:0000047,2.70e-19,33;CL:0000031,2.70e-19,33;CL:0000404,2.70e-19,33;CL:0000393,8.81e-15,39;CL:0000211,8.81e-15,39;CL:0000117,1.31e-14,23;CL:0000337,1.31e-14,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.03e-34!75;UBERON:0001016!3.03e-34!75;UBERON:0001017!8.68e-34!73;UBERON:0005743!8.68e-34!73;UBERON:0004121!6.32e-26!102;UBERON:0000924!6.32e-26!102;UBERON:0006601!6.32e-26!102;UBERON:0001049!2.40e-22!52;UBERON:0005068!2.40e-22!52;UBERON:0006241!2.40e-22!52;UBERON:0007135!2.40e-22!52;UBERON:0000033!2.61e-21!63;UBERON:0002346!7.92e-21!71;UBERON:0003075!7.92e-21!71;UBERON:0007284!7.92e-21!71;UBERON:0000955!1.00e-20!50;UBERON:0006238!1.00e-20!50;UBERON:0002616!3.24e-20!49;UBERON:0007811!5.15e-19!86;UBERON:0002020!4.51e-18!34;UBERON:0000153!1.43e-17!94;UBERON:0003056!1.64e-16!49;UBERON:0003080!3.01e-16!40;UBERON:0002780!9.86e-16!39;UBERON:0001890!9.86e-16!39;UBERON:0006240!9.86e-16!39;UBERON:0002791!4.77e-15!29;UBERON:0003528!4.77e-15!29;UBERON:0001893!4.77e-15!29;UBERON:0000956!5.74e-11!21;UBERON:0001869!5.74e-11!21;UBERON:0000203!5.74e-11!21;UBERON:0002619!1.39e-08!17;UBERON:0000475!5.67e-08!200;UBERON:0000025!5.84e-07!114;UBERON:0003076!8.47e-07!12;UBERON:0003057!8.47e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.03e-34,75;UBERON:0001017,8.66e-34,73;UBERON:0004121,1.39e-28,95;UBERON:0000924,1.39e-28,95;UBERON:0006601,1.39e-28,95;UBERON:0002346,4.97e-24,64;UBERON:0003075,4.97e-24,64;UBERON:0007284,4.97e-24,64;UBERON:0000073,2.15e-23,54;UBERON:0001049,2.39e-22,52;UBERON:0005068,2.39e-22,52;UBERON:0006241,2.39e-22,52;UBERON:0007135,2.39e-22,52;UBERON:0010371,1.41e-19,73;UBERON:0000955,4.48e-19,47;UBERON:0006238,4.48e-19,47;UBERON:0002616,1.42e-18,46;UBERON:0002020,4.50e-18,34;UBERON:0003056,1.63e-16,49;UBERON:0003080,3.01e-16,40;UBERON:0002780,9.85e-16,39;UBERON:0001890,9.85e-16,39;UBERON:0006240,9.85e-16,39;UBERON:0003528,4.77e-15,29;UBERON:0002791,4.77e-15,29;UBERON:0001893,4.77e-15,29;UBERON:0010314,2.78e-14,92;UBERON:0000956,5.74e-11,21;UBERON:0001869,5.74e-11,21;UBERON:0000203,5.74e-11,21;UBERON:0002619,1.39e-08,17;UBERON:0000025,5.87e-07,114;UBERON:0003076,8.47e-07,12;UBERON:0003057,8.47e-07,12 | |||
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| |||
|short_description=p1@Fam125b | |||
}} |
Revision as of 23:52, 13 September 2013
Short description: | p1@Fam125b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fam125b_5end |
Coexpression cluster: | MCL_coexpression_mm9:2345 |
Association with transcript: | 0bp_to_ENSMUST00000146892_5end |
EntrezGene: | Fam125b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 9.81e-22 | 44 |
neurectodermal cell | 9.81e-22 | 44 |
neural cell | 1.85e-21 | 43 |
neuron | 2.70e-19 | 33 |
neuronal stem cell | 2.70e-19 | 33 |
neuroblast | 2.70e-19 | 33 |
electrically signaling cell | 2.70e-19 | 33 |
electrically responsive cell | 8.81e-15 | 39 |
electrically active cell | 8.81e-15 | 39 |
CNS neuron (sensu Vertebrata) | 1.31e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.31e-14 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.03e-34 | 75 |
central nervous system | 8.66e-34 | 73 |
ectoderm-derived structure | 1.39e-28 | 95 |
ectoderm | 1.39e-28 | 95 |
presumptive ectoderm | 1.39e-28 | 95 |
neurectoderm | 4.97e-24 | 64 |
neural plate | 4.97e-24 | 64 |
presumptive neural plate | 4.97e-24 | 64 |
regional part of nervous system | 2.15e-23 | 54 |
neural tube | 2.39e-22 | 52 |
neural rod | 2.39e-22 | 52 |
future spinal cord | 2.39e-22 | 52 |
neural keel | 2.39e-22 | 52 |
ecto-epithelium | 1.41e-19 | 73 |
brain | 4.48e-19 | 47 |
future brain | 4.48e-19 | 47 |
regional part of brain | 1.42e-18 | 46 |
gray matter | 4.50e-18 | 34 |
pre-chordal neural plate | 1.63e-16 | 49 |
anterior neural tube | 3.01e-16 | 40 |
regional part of forebrain | 9.85e-16 | 39 |
forebrain | 9.85e-16 | 39 |
future forebrain | 9.85e-16 | 39 |
brain grey matter | 4.77e-15 | 29 |
regional part of telencephalon | 4.77e-15 | 29 |
telencephalon | 4.77e-15 | 29 |
structure with developmental contribution from neural crest | 2.78e-14 | 92 |
cerebral cortex | 5.74e-11 | 21 |
cerebral hemisphere | 5.74e-11 | 21 |
pallium | 5.74e-11 | 21 |
regional part of cerebral cortex | 1.39e-08 | 17 |
tube | 5.87e-07 | 114 |
posterior neural tube | 8.47e-07 | 12 |
chordal neural plate | 8.47e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.