FFCP PHASE1:Mm9::chr19:16207152..16207211,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14682|HGNC=|UniProt=P21279,Q3UHH5|association_with_transcript=-109bp_to_ENSMUST00000025541,NM_008139,uc008gwt.1_5end|description=CAGE_peak_1_at_Gnaq_5end|id=chr19:16207152..16207211,+|ontology_enrichment_celltype=CL:0000117!1.52e-08!23;CL:0000337!1.52e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.52e-08,23;CL:0000337,1.52e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!9.25e-10!63;UBERON:0000955!4.23e-09!50;UBERON:0006238!4.23e-09!50;UBERON:0001049!1.12e-08!52;UBERON:0005068!1.12e-08!52;UBERON:0006241!1.12e-08!52;UBERON:0007135!1.12e-08!52;UBERON:0002616!1.21e-08!49;UBERON:0002020!1.36e-07!34;UBERON:0002346!2.03e-07!71;UBERON:0003075!2.03e-07!71;UBERON:0007284!2.03e-07!71;UBERON:0003080!4.28e-07!40;UBERON:0003056!4.60e-07!49;UBERON:0002791!6.05e-07!29;UBERON:0003528!6.05e-07!29;UBERON:0001893!6.05e-07!29;UBERON:0002780!7.12e-07!39;UBERON:0001890!7.12e-07!39;UBERON:0006240!7.12e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.22e-09,54;UBERON:0001049,1.12e-08,52;UBERON:0005068,1.12e-08,52;UBERON:0006241,1.12e-08,52;UBERON:0007135,1.12e-08,52;UBERON:0000955,5.10e-08,47;UBERON:0006238,5.10e-08,47;UBERON:0010371,1.26e-07,73;UBERON:0002020,1.36e-07,34;UBERON:0002616,1.40e-07,46;UBERON:0002346,3.67e-07,64;UBERON:0003075,3.67e-07,64;UBERON:0007284,3.67e-07,64;UBERON:0003080,4.28e-07,40;UBERON:0003056,4.60e-07,49;UBERON:0003528,6.05e-07,29;UBERON:0002791,6.05e-07,29;UBERON:0001893,6.05e-07,29;UBERON:0002780,7.12e-07,39;UBERON:0001890,7.12e-07,39;UBERON:0006240,7.12e-07,39|phase1_expression=12.6517589212787,24.7772539423946,15.9249733786338,22.3823516367054,22.0394121176393,22.1600638923695,14.0167584357315,3.87369970324729,0.84473233291,0.234064526321993,1.19852577757853,1.67521533890206,1.02720437958723,1.04904482902797,1.66554880907831,2.83465374345756,0.699561878128147,5.0473946457318,7.12995054749842,6.36584477697045,12.246233781754,3.67376519443276,3.39559725880616,9.27956052201759,11.2410547722913,17.2269589234506,16.3689558540448,16.1603424514417,17.4821545899864,14.8697776558359,13.7472916606289,6.35030673459631,3.69038872550742,0,7.79899373328441,9.97407872150954,7.35009682544529,29.7157457823205,15.626706890476,31.4114246384279,32.3527318417058,37.5675016727145,41.2683800076481,7.05022180663233,7.60326984146359,6.42413632565885,6.25913075478431,2.8343270329458,3.51497892375155,3.88859798148567,4.19959264876088,1.43752564364972,6.87908684836719,1.45072428402269,1.00828139742739,6.94600477297057,8.5960031981627,8.76642556871652,16.589949790487,25.9205579843296,12.6766280701236,5.42151251310611,5.33576877666684,6.29929802096979,7.9109309005358,9.9467216092454,6.2916023208865,4.99483796918021,22.8117147078651,19.3058491814318,21.2428210964896,10.5690864229407,8.83474163806454,20.2109818704674,20.2233943848479,11.0306254393203,13.2139057199266,21.9622221506523,23.348193054949,16.7495585417346,20.767695097747,16.6692278578163,15.355064945076,15.757353080887,23.2253336620751,16.2045722010517,17.0846016958924,21.063137378259,9.0114170066489,11.3357340160178,9.27566363845369,3.44169550792555,4.0798280022465,5.93673510801599,7.79731700937203,5.37632264516803,8.14577636764161,11.5892619353079,9.09251016110041,11.6602059588412,17.7462708918617,16.6824420638613,30.5766287647975,35.5533351576666,8.87613268145978,6.58735650235256,2.52762222507392,9.81981365583916,2.33044095282455,13.5082346548991,8.15381035800839,5.78484408793068,12.4532368518272,13.8664829308413,12.2292255421133,19.1013218821107,9.39340877390621,9.25435884287435,1.76922110389975,10.676612096529,10.1587098491781,7.27312879702833,5.59175283654366,24.0080253549469,27.4375185925626,14.8165092020983,7.6681679683789,7.19883277192089,8.51370521389534,14.6794826616726,12.3525162761029,41.0889731409067,16.6871347384585,23.2701066170601,19.5320761885986,20.1179166204019,14.0538322113436,11.0722203842983,9.60346482047964,13.4682787767343,5.33493816147085,6.43725892413724,7.38254732201932,11.6042709733501,17.2812707844373,15.1174189936123,19.3962569838639,13.7112786491678,6.46703978798527,7.56424320671277,8.97350733236139,7.89104636739269,5.83899223373756,10.0993128291428,7.61393904709391,11.1459189418356,2.80885274925294,5.1469581422943,5.68326998791185,4.97101854085205,7.50483391939508,7.92273070428465,7.57583153872673,7.47704080640135,9.41029388613007,8.8362899005155,12.0723030629829,10.3921154706781,9.54447129498187,11.3275550214576,12.8088719082452,14.9123987173839,9.22110484222413,12.3469905259542,18.7158054222073,27.2697222805104,22.4684772428983,8.72686869989696,5.54549451391608,12.3085436086032,10.5671318284117,11.8993279527772,11.3412802360884,10.0819581839656,17.0830462156024,10.0466362381647,17.5934646160189,18.1050389557447,13.6474860983384,12.5834717211591,15.9942156907274,18.7192796859105,4.1726938209678,10.967857210534,9.01661885384643,9.36796108088446,11.2492442557223,17.0430042333474,15.492951595443,13.8753539100826,13.1878931386755,13.326893703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| ||
|EntrezGene=14682 | |||
|HGNC= | |||
|UniProt=P21279,Q3UHH5 | |||
|association_with_transcript=-109bp_to_ENSMUST00000025541,NM_008139,uc008gwt.1_5end | |||
|description=CAGE_peak_1_at_Gnaq_5end | |||
|id=chr19:16207152..16207211,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.52e-08!23;CL:0000337!1.52e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.52e-08,23;CL:0000337,1.52e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!9.25e-10!63;UBERON:0000955!4.23e-09!50;UBERON:0006238!4.23e-09!50;UBERON:0001049!1.12e-08!52;UBERON:0005068!1.12e-08!52;UBERON:0006241!1.12e-08!52;UBERON:0007135!1.12e-08!52;UBERON:0002616!1.21e-08!49;UBERON:0002020!1.36e-07!34;UBERON:0002346!2.03e-07!71;UBERON:0003075!2.03e-07!71;UBERON:0007284!2.03e-07!71;UBERON:0003080!4.28e-07!40;UBERON:0003056!4.60e-07!49;UBERON:0002791!6.05e-07!29;UBERON:0003528!6.05e-07!29;UBERON:0001893!6.05e-07!29;UBERON:0002780!7.12e-07!39;UBERON:0001890!7.12e-07!39;UBERON:0006240!7.12e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.22e-09,54;UBERON:0001049,1.12e-08,52;UBERON:0005068,1.12e-08,52;UBERON:0006241,1.12e-08,52;UBERON:0007135,1.12e-08,52;UBERON:0000955,5.10e-08,47;UBERON:0006238,5.10e-08,47;UBERON:0010371,1.26e-07,73;UBERON:0002020,1.36e-07,34;UBERON:0002616,1.40e-07,46;UBERON:0002346,3.67e-07,64;UBERON:0003075,3.67e-07,64;UBERON:0007284,3.67e-07,64;UBERON:0003080,4.28e-07,40;UBERON:0003056,4.60e-07,49;UBERON:0003528,6.05e-07,29;UBERON:0002791,6.05e-07,29;UBERON:0001893,6.05e-07,29;UBERON:0002780,7.12e-07,39;UBERON:0001890,7.12e-07,39;UBERON:0006240,7.12e-07,39 | |||
|phase1_expression=12.6517589212787,24.7772539423946,15.9249733786338,22.3823516367054,22.0394121176393,22.1600638923695,14.0167584357315,3.87369970324729,0.84473233291,0.234064526321993,1.19852577757853,1.67521533890206,1.02720437958723,1.04904482902797,1.66554880907831,2.83465374345756,0.699561878128147,5.0473946457318,7.12995054749842,6.36584477697045,12.246233781754,3.67376519443276,3.39559725880616,9.27956052201759,11.2410547722913,17.2269589234506,16.3689558540448,16.1603424514417,17.4821545899864,14.8697776558359,13.7472916606289,6.35030673459631,3.69038872550742,0,7.79899373328441,9.97407872150954,7.35009682544529,29.7157457823205,15.626706890476,31.4114246384279,32.3527318417058,37.5675016727145,41.2683800076481,7.05022180663233,7.60326984146359,6.42413632565885,6.25913075478431,2.8343270329458,3.51497892375155,3.88859798148567,4.19959264876088,1.43752564364972,6.87908684836719,1.45072428402269,1.00828139742739,6.94600477297057,8.5960031981627,8.76642556871652,16.589949790487,25.9205579843296,12.6766280701236,5.42151251310611,5.33576877666684,6.29929802096979,7.9109309005358,9.9467216092454,6.2916023208865,4.99483796918021,22.8117147078651,19.3058491814318,21.2428210964896,10.5690864229407,8.83474163806454,20.2109818704674,20.2233943848479,11.0306254393203,13.2139057199266,21.9622221506523,23.348193054949,16.7495585417346,20.767695097747,16.6692278578163,15.355064945076,15.757353080887,23.2253336620751,16.2045722010517,17.0846016958924,21.063137378259,9.0114170066489,11.3357340160178,9.27566363845369,3.44169550792555,4.0798280022465,5.93673510801599,7.79731700937203,5.37632264516803,8.14577636764161,11.5892619353079,9.09251016110041,11.6602059588412,17.7462708918617,16.6824420638613,30.5766287647975,35.5533351576666,8.87613268145978,6.58735650235256,2.52762222507392,9.81981365583916,2.33044095282455,13.5082346548991,8.15381035800839,5.78484408793068,12.4532368518272,13.8664829308413,12.2292255421133,19.1013218821107,9.39340877390621,9.25435884287435,1.76922110389975,10.676612096529,10.1587098491781,7.27312879702833,5.59175283654366,24.0080253549469,27.4375185925626,14.8165092020983,7.6681679683789,7.19883277192089,8.51370521389534,14.6794826616726,12.3525162761029,41.0889731409067,16.6871347384585,23.2701066170601,19.5320761885986,20.1179166204019,14.0538322113436,11.0722203842983,9.60346482047964,13.4682787767343,5.33493816147085,6.43725892413724,7.38254732201932,11.6042709733501,17.2812707844373,15.1174189936123,19.3962569838639,13.7112786491678,6.46703978798527,7.56424320671277,8.97350733236139,7.89104636739269,5.83899223373756,10.0993128291428,7.61393904709391,11.1459189418356,2.80885274925294,5.1469581422943,5.68326998791185,4.97101854085205,7.50483391939508,7.92273070428465,7.57583153872673,7.47704080640135,9.41029388613007,8.8362899005155,12.0723030629829,10.3921154706781,9.54447129498187,11.3275550214576,12.8088719082452,14.9123987173839,9.22110484222413,12.3469905259542,18.7158054222073,27.2697222805104,22.4684772428983,8.72686869989696,5.54549451391608,12.3085436086032,10.5671318284117,11.8993279527772,11.3412802360884,10.0819581839656,17.0830462156024,10.0466362381647,17.5934646160189,18.1050389557447,13.6474860983384,12.5834717211591,15.9942156907274,18.7192796859105,4.1726938209678,10.967857210534,9.01661885384643,9.36796108088446,11.2492442557223,17.0430042333474,15.492951595443,13.8753539100826,13.1878931386755,13.3268937035545,7.11486305009157,3.33690211432188,3.53806191203765,4.94696647246678,2.63718157805054,5.788251834058,6.11102044275408,8.34318798607351,10.3766545136023,6.58947391651396,15.814502718009,6.32639611036456,6.86482880852033,7.07220858251913,9.86685774370517,8.20153986317724,14.5955020231618,7.39016505904891,6.19266910479698,9.33597971763535,10.3263709246941,11.5579317634853,11.1880511216426,23.4160377429359,13.24135210492,18.8244986201459,22.6425771493632,19.0081445070256,20.0314578964439,22.7099021972973,15.0791283939272,9.24639662491806,14.2611639175521,18.2118252561123,16.3761601787548,19.5743516608979,9.67216177722385,6.81671503451807,4.10160685241134,3.90438744296638,5.60100834105277,5.9742199488138,7.35235624471901,4.24614796183249,3.23848561339915,7.01414058987149,6.32460444714438,21.8498495166829,10.9293865610367,7.65682095769198,10.2618784392753,10.8880281161873,13.2745138339963,5.82673526771955,12.9999129494843,12.2593301841334,9.7449624650655,12.604841065701,10.8539883130653,10.1789444253702,13.9033977570041,15.485801138855,14.7586052004998,17.5330423521918,21.1072555567349,8.46287141947158,5.04498866752743,10.2881776815164,11.8817956540323,13.3776613201553,12.176627524557,7.30715877875038,13.1416156515678,11.6507638975101,9.70324951441832,8.244312647074,9.68786560175433,12.1832108354875,9.43041517624778,9.68431308495861,17.488850197791,18.542530201051,5.29699730473343,9.70018279427146,9.63011542322501,6.40452753815949,3.69074414846768,6.86334519619568,13.7682528295023,8.53703859174314,10.2267980615274,10.5013767981662,7.75023184273782,11.3858901591035,11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| |||
|short_description=p1@Gnaq | |||
}} |
Revision as of 17:06, 13 September 2013
Short description: | p1@Gnaq |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gnaq_5end |
Coexpression cluster: | NA |
Association with transcript: | -109bp_to_ENSMUST00000025541, NM_008139, uc008gwt.1_5end |
EntrezGene: | Gnaq |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.52e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.52e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.22e-09 | 54 |
neural tube | 1.12e-08 | 52 |
neural rod | 1.12e-08 | 52 |
future spinal cord | 1.12e-08 | 52 |
neural keel | 1.12e-08 | 52 |
brain | 5.10e-08 | 47 |
future brain | 5.10e-08 | 47 |
ecto-epithelium | 1.26e-07 | 73 |
gray matter | 1.36e-07 | 34 |
regional part of brain | 1.40e-07 | 46 |
neurectoderm | 3.67e-07 | 64 |
neural plate | 3.67e-07 | 64 |
presumptive neural plate | 3.67e-07 | 64 |
anterior neural tube | 4.28e-07 | 40 |
pre-chordal neural plate | 4.60e-07 | 49 |
brain grey matter | 6.05e-07 | 29 |
regional part of telencephalon | 6.05e-07 | 29 |
telencephalon | 6.05e-07 | 29 |
regional part of forebrain | 7.12e-07 | 39 |
forebrain | 7.12e-07 | 39 |
future forebrain | 7.12e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.