FFCP PHASE1:Mm9::chr2:181333833..181333940,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=229011|HGNC=|MCL_coexpression_id=22|UniProt=Q7TST3,F6QV81,Q3TBN2|association_with_transcript=0bp_to_ENSMUST00000060173,ENSMUST00000098967,ENSMUST00000155783,NM_172676,uc008omw.1,uc008omx.1,uc012cmt.1_5end|description=CAGE_peak_1_at_Samd10_5end|id=chr2:181333833..181333940,-|ontology_enrichment_celltype=CL:0000117!8.77e-15!23;CL:0000337!8.77e-15!23;CL:0000540!5.73e-10!33;CL:0000047!5.73e-10!33;CL:0000031!5.73e-10!33;CL:0000404!5.73e-10!33;CL:0000221!2.22e-07!44;CL:0000133!2.22e-07!44;CL:0002319!3.87e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,8.76e-15,23;CL:0000337,8.76e-15,23;CL:0000540,5.73e-10,33;CL:0000047,5.73e-10,33;CL:0000031,5.73e-10,33;CL:0000404,5.73e-10,33;CL:0000221,2.22e-07,44;CL:0000133,2.22e-07,44;CL:0002319,3.86e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.61e-20!52;UBERON:0005068!1.61e-20!52;UBERON:0006241!1.61e-20!52;UBERON:0007135!1.61e-20!52;UBERON:0001017!1.85e-19!73;UBERON:0005743!1.85e-19!73;UBERON:0000033!3.47e-19!63;UBERON:0000955!2.28e-18!50;UBERON:0006238!2.28e-18!50;UBERON:0002616!3.74e-18!49;UBERON:0000073!3.76e-18!75;UBERON:0001016!3.76e-18!75;UBERON:0004121!4.16e-18!102;UBERON:0000924!4.16e-18!102;UBERON:0006601!4.16e-18!102;UBERON:0002346!8.12e-18!71;UBERON:0003075!8.12e-18!71;UBERON:0007284!8.12e-18!71;UBERON:0002020!2.34e-16!34;UBERON:0003080!3.26e-15!40;UBERON:0003056!4.32e-15!49;UBERON:0002780!9.02e-15!39;UBERON:0001890!9.02e-15!39;UBERON:0006240!9.02e-15!39;UBERON:0002791!4.64e-13!29;UBERON:0003528!4.64e-13!29;UBERON:0001893!4.64e-13!29;UBERON:0000956!4.63e-09!21;UBERON:0001869!4.63e-09!21;UBERON:0000203!4.63e-09!21;UBERON:0007023!1.09e-08!51;UBERON:0007811!1.38e-08!86;UBERON:0000160!3.92e-08!43;UBERON:0002619!5.79e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.43e-21,54;UBERON:0001049,1.61e-20,52;UBERON:0005068,1.61e-20,52;UBERON:0006241,1.61e-20,52;UBERON:0007135,1.61e-20,52;UBERON:0002346,7.83e-20,64;UBERON:0003075,7.83e-20,64;UBERON:0007284,7.83e-20,64;UBERON:0001017,1.85e-19,73;UBERON:0004121,1.91e-19,95;UBERON:0000924,1.91e-19,95;UBERON:0006601,1.91e-19,95;UBERON:0010371,7.34e-19,73;UBERON:0001016,3.76e-18,75;UBERON:0000955,8.32e-17,47;UBERON:0006238,8.32e-17,47;UBERON:0002616,1.35e-16,46;UBERON:0002020,2.33e-16,34;UBERON:0003080,3.25e-15,40;UBERON:0003056,4.31e-15,49;UBERON:0002780,9.01e-15,39;UBERON:0001890,9.01e-15,39;UBERON:0006240,9.01e-15,39;UBERON:0003528,4.63e-13,29;UBERON:0002791,4.63e-13,29;UBERON:0001893,4.63e-13,29;UBERON:0000956,4.63e-09,21;UBERON:0001869,4.63e-09,21;UBERON:0000203,4.63e-09,21;UBERON:0010314,4.84e-09,92;UBERON:0007023,1.09e-08,51;UBERON:0002619,5.79e-07,17|phase1_expression=8.96833543786846,10.4692622291808,11.8299802241279,14.8207463540347,13.5241847085514,13.9339795686869,14.9512089981136,9.16775596435192,1.40788722151667,0.234064526321993,3.4243593645101,5.02564601670619,12.1552518251156,12.0640155338216,3.33109761815663,2.22722794128809,3.49780939064073,10.8834447048592,12.614527891728,11.4585205985468,10.2051948181284,8.63831275447702,7.05239430675126,10.239515058778,13.3057383018959,9.18771142584032,9.04600191934057,9.04979177280734,12.5415456841207,13.3575968772763,13.082100128663,0,0,0,15.5979874665688,15.6260566636983,22.662798545123,13.811543814318,17.1893775795236,12.0410461113974,19.4116391050235,17.0761371239611,13.5942898848723,2.51793635951155,2.23029248682932,3.67093504323363,1.56478268869608,17.4420125104357,12.3024262331304,8.1660557611199,6.57936181639204,7.18762821824858,7.71799987865587,5.07753499407941,3.6970317905671,0.771778308107841,0.85960031981627,1.54701627683233,105.204559646991,89.3994754969736,110.286664210075,2.71075625655306,6.22506357277798,5.39939830368839,8.89979726310277,4.2628806896766,6.89080254192331,13.0634223809329,30.4847460186924,31.4563836312839,34.0726437389239,57.4158478651645,48.1493419274518,39.3195465480002,38.6257248203493,57.9107835564313,20.9220173898839,23.8775322219301,21.8121277223866,112.235230858395,105.759716004386,82.3043125479681,28.4766658981409,12.9435400307286,18.0301932376636,52.4438882143128,51.8232918108735,85.7437450796383,2.04460721999597,7.48158445057177,10.7249860819621,2.58127163094416,1.3599426674155,2.69851595818909,1.94932925234301,1.79210754838934,7.02222100658759,0,0,0.35333957451034,14.9294024963281,1.28326477414318,0,0,21.6491041011214,24.0691872201344,29.3204178108574,8.33542321949138,12.6879562987114,12.4691396814453,5.03107447621794,7.00270600117925,6.91846491768175,9.19408107370998,7.4080885495494,12.8179923156269,12.1125534189843,4.48258006451726,9.73071607144862,2.42650274921114,2.20841518460394,4.363877278217,24.2309289583559,29.2780797011547,27.6469652993761,19.1592791406444,2.27648736561249,2.99951365496704,2.28726408731516,20.0719456802462,18.3000241127451,40.0837383240037,19.2944995413427,17.6443665557928,21.1943805450751,16.2241263067758,5.70300437561771,9.82815067819735,49.2809378945666,27.988766832901,7.1566243629487,12.4147136394075,10.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| ||
|EntrezGene=229011 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q7TST3,F6QV81,Q3TBN2 | |||
|association_with_transcript=0bp_to_ENSMUST00000060173,ENSMUST00000098967,ENSMUST00000155783,NM_172676,uc008omw.1,uc008omx.1,uc012cmt.1_5end | |||
|description=CAGE_peak_1_at_Samd10_5end | |||
|id=chr2:181333833..181333940,- | |||
|ontology_enrichment_celltype=CL:0000117!8.77e-15!23;CL:0000337!8.77e-15!23;CL:0000540!5.73e-10!33;CL:0000047!5.73e-10!33;CL:0000031!5.73e-10!33;CL:0000404!5.73e-10!33;CL:0000221!2.22e-07!44;CL:0000133!2.22e-07!44;CL:0002319!3.87e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.76e-15,23;CL:0000337,8.76e-15,23;CL:0000540,5.73e-10,33;CL:0000047,5.73e-10,33;CL:0000031,5.73e-10,33;CL:0000404,5.73e-10,33;CL:0000221,2.22e-07,44;CL:0000133,2.22e-07,44;CL:0002319,3.86e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.61e-20!52;UBERON:0005068!1.61e-20!52;UBERON:0006241!1.61e-20!52;UBERON:0007135!1.61e-20!52;UBERON:0001017!1.85e-19!73;UBERON:0005743!1.85e-19!73;UBERON:0000033!3.47e-19!63;UBERON:0000955!2.28e-18!50;UBERON:0006238!2.28e-18!50;UBERON:0002616!3.74e-18!49;UBERON:0000073!3.76e-18!75;UBERON:0001016!3.76e-18!75;UBERON:0004121!4.16e-18!102;UBERON:0000924!4.16e-18!102;UBERON:0006601!4.16e-18!102;UBERON:0002346!8.12e-18!71;UBERON:0003075!8.12e-18!71;UBERON:0007284!8.12e-18!71;UBERON:0002020!2.34e-16!34;UBERON:0003080!3.26e-15!40;UBERON:0003056!4.32e-15!49;UBERON:0002780!9.02e-15!39;UBERON:0001890!9.02e-15!39;UBERON:0006240!9.02e-15!39;UBERON:0002791!4.64e-13!29;UBERON:0003528!4.64e-13!29;UBERON:0001893!4.64e-13!29;UBERON:0000956!4.63e-09!21;UBERON:0001869!4.63e-09!21;UBERON:0000203!4.63e-09!21;UBERON:0007023!1.09e-08!51;UBERON:0007811!1.38e-08!86;UBERON:0000160!3.92e-08!43;UBERON:0002619!5.79e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.43e-21,54;UBERON:0001049,1.61e-20,52;UBERON:0005068,1.61e-20,52;UBERON:0006241,1.61e-20,52;UBERON:0007135,1.61e-20,52;UBERON:0002346,7.83e-20,64;UBERON:0003075,7.83e-20,64;UBERON:0007284,7.83e-20,64;UBERON:0001017,1.85e-19,73;UBERON:0004121,1.91e-19,95;UBERON:0000924,1.91e-19,95;UBERON:0006601,1.91e-19,95;UBERON:0010371,7.34e-19,73;UBERON:0001016,3.76e-18,75;UBERON:0000955,8.32e-17,47;UBERON:0006238,8.32e-17,47;UBERON:0002616,1.35e-16,46;UBERON:0002020,2.33e-16,34;UBERON:0003080,3.25e-15,40;UBERON:0003056,4.31e-15,49;UBERON:0002780,9.01e-15,39;UBERON:0001890,9.01e-15,39;UBERON:0006240,9.01e-15,39;UBERON:0003528,4.63e-13,29;UBERON:0002791,4.63e-13,29;UBERON:0001893,4.63e-13,29;UBERON:0000956,4.63e-09,21;UBERON:0001869,4.63e-09,21;UBERON:0000203,4.63e-09,21;UBERON:0010314,4.84e-09,92;UBERON:0007023,1.09e-08,51;UBERON:0002619,5.79e-07,17 | |||
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| |||
|short_description=p1@Samd10 | |||
}} |
Revision as of 23:17, 13 September 2013
Short description: | p1@Samd10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Samd10_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000060173, ENSMUST00000098967, ENSMUST00000155783, NM_172676, uc008omw.1, uc008omx.1, uc012cmt.1_5end |
EntrezGene: | Samd10 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.76e-15 | 23 |
neuroblast (sensu Vertebrata) | 8.76e-15 | 23 |
neuron | 5.73e-10 | 33 |
neuronal stem cell | 5.73e-10 | 33 |
neuroblast | 5.73e-10 | 33 |
electrically signaling cell | 5.73e-10 | 33 |
ectodermal cell | 2.22e-07 | 44 |
neurectodermal cell | 2.22e-07 | 44 |
neural cell | 3.86e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.43e-21 | 54 |
neural tube | 1.61e-20 | 52 |
neural rod | 1.61e-20 | 52 |
future spinal cord | 1.61e-20 | 52 |
neural keel | 1.61e-20 | 52 |
neurectoderm | 7.83e-20 | 64 |
neural plate | 7.83e-20 | 64 |
presumptive neural plate | 7.83e-20 | 64 |
central nervous system | 1.85e-19 | 73 |
ectoderm-derived structure | 1.91e-19 | 95 |
ectoderm | 1.91e-19 | 95 |
presumptive ectoderm | 1.91e-19 | 95 |
ecto-epithelium | 7.34e-19 | 73 |
nervous system | 3.76e-18 | 75 |
brain | 8.32e-17 | 47 |
future brain | 8.32e-17 | 47 |
regional part of brain | 1.35e-16 | 46 |
gray matter | 2.33e-16 | 34 |
anterior neural tube | 3.25e-15 | 40 |
pre-chordal neural plate | 4.31e-15 | 49 |
regional part of forebrain | 9.01e-15 | 39 |
forebrain | 9.01e-15 | 39 |
future forebrain | 9.01e-15 | 39 |
brain grey matter | 4.63e-13 | 29 |
regional part of telencephalon | 4.63e-13 | 29 |
telencephalon | 4.63e-13 | 29 |
cerebral cortex | 4.63e-09 | 21 |
cerebral hemisphere | 4.63e-09 | 21 |
pallium | 4.63e-09 | 21 |
structure with developmental contribution from neural crest | 4.84e-09 | 92 |
adult organism | 1.09e-08 | 51 |
regional part of cerebral cortex | 5.79e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.